RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 BCL2L12Q9HB09 334 aa8.94□□□□□ -0.98
CD44-221ENST00000526000 GOLGB1Q14789 3259 aaKnown RBP8.94□□□□□ -0.98
CD44-221ENST00000526000 PKD1L3Q7Z443 1732 aa8.94□□□□□ -0.98
CD44-221ENST00000526000 ZNF622Q969S3 477 aaKnown RBP eCLIP8.93□□□□□ -0.98
CD44-221ENST00000526000 TBC1D2BQ9UPU7 963 aa8.93□□□□□ -0.98
CD44-221ENST00000526000 KDM2BQ8NHM5 1336 aa8.93□□□□□ -0.98
CD44-221ENST00000526000 KCPQ6ZWJ8 1503 aa8.92□□□□□ -0.98
CD44-221ENST00000526000 SOS1Q07889 1333 aaPredicted RBP8.92□□□□□ -0.98
CD44-221ENST00000526000 U2SURPO15042 1029 aaKnown RBP8.92□□□□□ -0.98
CD44-221ENST00000526000 TTLL6Q8N841 843 aa8.92□□□□□ -0.98
CD44-221ENST00000526000 KLRG1Q96E93 195 aa8.92□□□□□ -0.98
CD44-221ENST00000526000 NARFQ9UHQ1 456 aa8.92□□□□□ -0.98
CD44-221ENST00000526000 H0YIN7 160 aa8.91□□□□□ -0.98
CD44-221ENST00000526000 KCNQ3O43525 872 aa8.91□□□□□ -0.98
CD44-221ENST00000526000 C21orf2O43822 256 aa8.91□□□□□ -0.98
CD44-221ENST00000526000 DIAPH1O60610 1272 aaKnown RBP8.91□□□□□ -0.98
CD44-221ENST00000526000 PIP4K2AP48426 406 aaPredicted RBP8.91□□□□□ -0.98
CD44-221ENST00000526000 AMER1Q5JTC6 1135 aaPredicted RBP8.91□□□□□ -0.98
CD44-221ENST00000526000 TBC1D9BQ66K14 1250 aa8.91□□□□□ -0.98
CD44-221ENST00000526000 MYH14Q7Z406 1995 aaKnown RBP8.91□□□□□ -0.98
CD44-221ENST00000526000 NPHP1O15259 732 aa8.9□□□□□ -0.98
CD44-221ENST00000526000 A1BGP04217 495 aa8.9□□□□□ -0.98
CD44-221ENST00000526000 LMNB1P20700 586 aa8.9□□□□□ -0.98
CD44-221ENST00000526000 FSTL1Q12841 308 aa8.9□□□□□ -0.98
CD44-221ENST00000526000 TTC5Q8N0Z6 440 aa8.9□□□□□ -0.98
CD44-221ENST00000526000 IL17REQ8NFR9 667 aa8.9□□□□□ -0.98
CD44-221ENST00000526000 ZNF496Q96IT1 587 aaPredicted RBP8.9□□□□□ -0.98
CD44-221ENST00000526000 CEP350Q5VT06 3117 aa8.89□□□□□ -0.99
CD44-221ENST00000526000 C4AP0C0L4 1744 aa8.89□□□□□ -0.99
CD44-221ENST00000526000 GLTPD2A6NH11 291 aa8.89□□□□□ -0.99
CD44-221ENST00000526000 STARD3NLO95772 234 aa8.89□□□□□ -0.99
CD44-221ENST00000526000 VEGFAP15692 232 aaPredicted RBP8.89□□□□□ -0.99
CD44-221ENST00000526000 TEFQ10587 303 aa8.89□□□□□ -0.99
CD44-221ENST00000526000 SMC1BQ8NDV3 1235 aa8.89□□□□□ -0.99
CD44-221ENST00000526000 COL15A1P39059 1388 aa8.88□□□□□ -0.99
CD44-221ENST00000526000 FAM177BA6PVY3 158 aa8.88□□□□□ -0.99
CD44-221ENST00000526000 NFKBIEO00221 500 aa8.88□□□□□ -0.99
CD44-221ENST00000526000 EIF5P55010 431 aaKnown RBP8.88□□□□□ -0.99
CD44-221ENST00000526000 TNS4Q8IZW8 715 aa8.88□□□□□ -0.99
CD44-221ENST00000526000 CARMIL3Q8ND23 1372 aa8.87□□□□□ -0.99
CD44-221ENST00000526000 PLEKHG2Q9H7P9 1386 aa8.87□□□□□ -0.99
CD44-221ENST00000526000 KIF7Q2M1P5 1343 aa8.87□□□□□ -0.99
CD44-221ENST00000526000 PRAMEF22A3QJZ6 481 aa8.87□□□□□ -0.99
CD44-221ENST00000526000 POTECB2RU33 542 aa8.87□□□□□ -0.99
CD44-221ENST00000526000 DDNO94850 711 aaPredicted RBP8.87□□□□□ -0.99
CD44-221ENST00000526000 ERFEQ4G0M1 354 aa8.87□□□□□ -0.99
CD44-221ENST00000526000 DPY19L2Q6NUT2 758 aa8.87□□□□□ -0.99
CD44-221ENST00000526000 NPM2Q86SE8 214 aaKnown RBP8.87□□□□□ -0.99
CD44-221ENST00000526000 USP16Q9Y5T5 823 aa8.87□□□□□ -0.99
CD44-221ENST00000526000 KIAA1551Q9HCM1 1747 aa8.86□□□□□ -0.99
CD44-221ENST00000526000 A0A087WZG4 1122 aa8.86□□□□□ -0.99
CD44-221ENST00000526000 GNAT3A8MTJ3 354 aa8.86□□□□□ -0.99
CD44-221ENST00000526000 PER1O15534 1290 aaPredicted RBP8.86□□□□□ -0.99
CD44-221ENST00000526000 POTEIP0CG38 1075 aa8.86□□□□□ -0.99
CD44-221ENST00000526000 POTEJP0CG39 1038 aa8.86□□□□□ -0.99
CD44-221ENST00000526000 HSPA1AP0DMV8 641 aaKnown RBP8.86□□□□□ -0.99
CD44-221ENST00000526000 HSPA1BP0DMV9 641 aaKnown RBP8.86□□□□□ -0.99
CD44-221ENST00000526000 PRR5LQ6MZQ0 368 aa8.86□□□□□ -0.99
CD44-221ENST00000526000 ZNF790Q6PG37 636 aa8.86□□□□□ -0.99
CD44-221ENST00000526000 JMYQ8N9B5 988 aa8.86□□□□□ -0.99
CD44-221ENST00000526000 PHACTR3Q96KR7 559 aa8.86□□□□□ -0.99
CD44-221ENST00000526000 SETDB2Q96T68 719 aa8.86□□□□□ -0.99
CD44-221ENST00000526000 MKRN1Q9UHC7 482 aaKnown RBP8.86□□□□□ -0.99
CD44-221ENST00000526000 BTBD11A6QL63 1104 aa8.85□□□□□ -0.99
CD44-221ENST00000526000 PDE6BP35913 854 aa8.85□□□□□ -0.99
CD44-221ENST00000526000 DCTN1Q14203 1278 aa8.85□□□□□ -0.99
CD44-221ENST00000526000 OLFM4Q6UX06 510 aa8.85□□□□□ -0.99
CD44-221ENST00000526000 VSIG10Q8N0Z9 540 aa8.85□□□□□ -0.99
CD44-221ENST00000526000 NGEFQ8N5V2 710 aa8.85□□□□□ -0.99
CD44-221ENST00000526000 BRIP1Q9BX63 1249 aa8.85□□□□□ -0.99
CD44-221ENST00000526000 CAMTA2O94983 1202 aa8.84□□□□□ -0.99
CD44-221ENST00000526000 PRKAR2BP31323 418 aa8.84□□□□□ -0.99
CD44-221ENST00000526000 MCM10Q7L590 875 aa8.84□□□□□ -0.99
CD44-221ENST00000526000 DZIP3Q86Y13 1208 aaKnown RBP8.84□□□□□ -0.99
CD44-221ENST00000526000 CNBD1Q8NA66 436 aa8.84□□□□□ -0.99
CD44-221ENST00000526000 GAS2L2Q8NHY3 880 aa8.84□□□□□ -0.99
CD44-221ENST00000526000 FMNL2Q96PY5 1086 aa8.84□□□□□ -0.99
CD44-221ENST00000526000 TEX13AQ9BXU3 409 aaPredicted RBP8.84□□□□□ -0.99
CD44-221ENST00000526000 MIS18AQ9NYP9 233 aa8.84□□□□□ -0.99
CD44-221ENST00000526000 ANKRD26Q9UPS8 1709 aa8.84□□□□□ -0.99
CD44-221ENST00000526000 KIF13BQ9NQT8 1826 aa8.84□□□□□ -0.99
CD44-221ENST00000526000 HEG1Q9ULI3 1381 aa8.84□□□□□ -0.99
CD44-221ENST00000526000 IL6STP40189 918 aaPredicted RBP8.83□□□□□ -1
CD44-221ENST00000526000 CLEC11AQ9Y240 323 aa8.83□□□□□ -1
CD44-221ENST00000526000 COL5A3P25940 1745 aaPredicted RBP8.83□□□□□ -1
CD44-221ENST00000526000 TCERG1O14776 1098 aaKnown RBP8.82□□□□□ -1
CD44-221ENST00000526000 U2AF1L5P0DN76 240 aaPredicted RBP8.82□□□□□ -1
CD44-221ENST00000526000 ST5P78524 1137 aa8.82□□□□□ -1
CD44-221ENST00000526000 U2AF1Q01081 240 aaKnown RBP eCLIP8.82□□□□□ -1
CD44-221ENST00000526000 EAPPQ56P03 285 aaPredicted RBP8.82□□□□□ -1
CD44-221ENST00000526000 CHADLQ6NUI6 762 aa8.82□□□□□ -1
CD44-221ENST00000526000 PRPF40BQ6NWY9 871 aaKnown RBP8.82□□□□□ -1
CD44-221ENST00000526000 NBPF5PQ86XG9 351 aaPredicted RBP8.82□□□□□ -1
CD44-221ENST00000526000 CNKSR1Q969H4 720 aa8.82□□□□□ -1
CD44-221ENST00000526000 TAOK3Q9H2K8 898 aa8.82□□□□□ -1
CD44-221ENST00000526000 ZNF277Q9NRM2 450 aaPredicted RBP8.82□□□□□ -1
CD44-221ENST00000526000 TJP1Q07157 1748 aa8.82□□□□□ -1
CD44-221ENST00000526000 SRGNP10124 158 aa8.81□□□□□ -1
CD44-221ENST00000526000 RTF1Q92541 710 aaKnown RBP8.81□□□□□ -1
CD44-221ENST00000526000 MASTLQ96GX5 879 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms