RNA–Protein interactions for RNA: ENST00000523062.1

CSMD1-211, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 3

Gene CSMD1, Length 764 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-211ENST00000523062 ERICH6BQ5W0A0 696 aa9.06□□□□□ -0.96
CSMD1-211ENST00000523062 NGEFQ8N5V2 710 aa9.06□□□□□ -0.96
CSMD1-211ENST00000523062 KIFC2Q96AC6 838 aa9.06□□□□□ -0.96
CSMD1-211ENST00000523062 GGNBP2Q9H3C7 697 aa9.06□□□□□ -0.96
CSMD1-211ENST00000523062 TOPAZ1Q8N9V7 1692 aa9.06□□□□□ -0.96
CSMD1-211ENST00000523062 SHPRHQ149N8 1683 aa9.05□□□□□ -0.96
CSMD1-211ENST00000523062 MTHFSP49914 203 aa9.05□□□□□ -0.96
CSMD1-211ENST00000523062 ITSN1Q15811 1721 aa9.05□□□□□ -0.96
CSMD1-211ENST00000523062 MON2Q7Z3U7 1717 aa9.05□□□□□ -0.96
CSMD1-211ENST00000523062 PRR36Q9H6K5 1346 aa9.05□□□□□ -0.96
CSMD1-211ENST00000523062 SENP3-EIF4A1A0A087X0R7 540 aa9.04□□□□□ -0.96
CSMD1-211ENST00000523062 PTGDRQ13258 359 aa9.04□□□□□ -0.96
CSMD1-211ENST00000523062 ZSCAN1Q8NBB4 408 aa9.04□□□□□ -0.96
CSMD1-211ENST00000523062 SALL2Q9Y467 1007 aaPredicted RBP9.04□□□□□ -0.96
CSMD1-211ENST00000523062 NPHP4O75161 1426 aaPredicted RBP9.04□□□□□ -0.96
CSMD1-211ENST00000523062 AKAP12Q02952 1782 aa9.04□□□□□ -0.96
CSMD1-211ENST00000523062 RNF123Q5XPI4 1314 aa9.04□□□□□ -0.96
CSMD1-211ENST00000523062 COL3A1P02461 1466 aaPredicted RBP9.03□□□□□ -0.96
CSMD1-211ENST00000523062 PLEKHG3A1L390 1219 aa9.03□□□□□ -0.96
CSMD1-211ENST00000523062 SUZ12Q15022 739 aaKnown RBP9.03□□□□□ -0.96
CSMD1-211ENST00000523062 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.03□□□□□ -0.96
CSMD1-211ENST00000523062 WDR70Q9NW82 654 aa9.03□□□□□ -0.96
CSMD1-211ENST00000523062 ANKARQ7Z5J8 1434 aa9.03□□□□□ -0.96
CSMD1-211ENST00000523062 ZNF521Q96K83 1311 aa9.03□□□□□ -0.96
CSMD1-211ENST00000523062 KCNA6P17658 529 aa9.02□□□□□ -0.97
CSMD1-211ENST00000523062 CCDC146Q8IYE0 955 aa9.02□□□□□ -0.97
CSMD1-211ENST00000523062 BBXQ8WY36 941 aaPredicted RBP9.02□□□□□ -0.97
CSMD1-211ENST00000523062 FCF1Q9Y324 198 aaKnown RBP9.02□□□□□ -0.97
CSMD1-211ENST00000523062 NKTRP30414 1462 aaKnown RBP9.02□□□□□ -0.97
CSMD1-211ENST00000523062 IQSEC2Q5JU85 1478 aa9.02□□□□□ -0.97
CSMD1-211ENST00000523062 PUS10Q3MIT2 529 aaKnown RBP9.01□□□□□ -0.97
CSMD1-211ENST00000523062 NRKQ7Z2Y5 1582 aa9.01□□□□□ -0.97
CSMD1-211ENST00000523062 SNIP1Q8TAD8 396 aaKnown RBP9.01□□□□□ -0.97
CSMD1-211ENST00000523062 RUNDC1Q96C34 613 aa9.01□□□□□ -0.97
CSMD1-211ENST00000523062 AATKQ6ZMQ8 1374 aa9□□□□□ -0.97
CSMD1-211ENST00000523062 PNPLA6Q8IY17 1366 aa9□□□□□ -0.97
CSMD1-211ENST00000523062 USP6P35125 1406 aa9□□□□□ -0.97
CSMD1-211ENST00000523062 APAF1O14727 1248 aa9□□□□□ -0.97
CSMD1-211ENST00000523062 SMPD1P17405 629 aa9□□□□□ -0.97
CSMD1-211ENST00000523062 FAM161AQ3B820 660 aa9□□□□□ -0.97
CSMD1-211ENST00000523062 NME9Q86XW9 330 aa9□□□□□ -0.97
CSMD1-211ENST00000523062 COG3Q96JB2 828 aa9□□□□□ -0.97
CSMD1-211ENST00000523062 RCAN3Q9UKA8 241 aa9□□□□□ -0.97
CSMD1-211ENST00000523062 CDK12Q9NYV4 1490 aaPredicted RBP9□□□□□ -0.97
CSMD1-211ENST00000523062 CHD2O14647 1828 aaKnown RBP9□□□□□ -0.97
CSMD1-211ENST00000523062 ACEP12821 1306 aa9□□□□□ -0.97
CSMD1-211ENST00000523062 FMN2Q9NZ56 1722 aa9□□□□□ -0.97
CSMD1-211ENST00000523062 ZBTB24O43167 697 aaPredicted RBP8.99□□□□□ -0.97
CSMD1-211ENST00000523062 U2AF1L5P0DN76 240 aaPredicted RBP8.99□□□□□ -0.97
CSMD1-211ENST00000523062 IRX6P78412 446 aaPredicted RBP8.99□□□□□ -0.97
CSMD1-211ENST00000523062 U2AF1Q01081 240 aaKnown RBP eCLIP8.99□□□□□ -0.97
CSMD1-211ENST00000523062 TTC21BQ7Z4L5 1316 aa8.99□□□□□ -0.97
CSMD1-211ENST00000523062 TTC21AQ8NDW8 1320 aa8.99□□□□□ -0.97
CSMD1-211ENST00000523062 NWD1Q149M9 1564 aa8.99□□□□□ -0.97
CSMD1-211ENST00000523062 ADGRL3Q9HAR2 1447 aa8.98□□□□□ -0.97
CSMD1-211ENST00000523062 WNT7AO00755 349 aa8.98□□□□□ -0.97
CSMD1-211ENST00000523062 DIAPH1O60610 1272 aaKnown RBP8.98□□□□□ -0.97
CSMD1-211ENST00000523062 RRP1P56182 461 aaKnown RBP8.98□□□□□ -0.97
CSMD1-211ENST00000523062 PPP4R2Q9NY27 417 aa8.98□□□□□ -0.97
CSMD1-211ENST00000523062 OVOS2A0A0J9YW53 1432 aa8.97□□□□□ -0.97
CSMD1-211ENST00000523062 OVOS2Q6IE36 1432 aa8.97□□□□□ -0.97
CSMD1-211ENST00000523062 SSH2Q76I76 1423 aa8.97□□□□□ -0.97
CSMD1-211ENST00000523062 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.97□□□□□ -0.97
CSMD1-211ENST00000523062 NUTM2FA1L443 756 aa8.97□□□□□ -0.97
CSMD1-211ENST00000523062 E9PSI1 815 aa8.97□□□□□ -0.97
CSMD1-211ENST00000523062 U2SURPO15042 1029 aaKnown RBP8.97□□□□□ -0.97
CSMD1-211ENST00000523062 LORP23490 312 aaPredicted RBP8.97□□□□□ -0.97
CSMD1-211ENST00000523062 GMPRP36959 345 aa8.97□□□□□ -0.97
CSMD1-211ENST00000523062 SLFN5Q08AF3 891 aa8.97□□□□□ -0.97
CSMD1-211ENST00000523062 DUSP27Q5VZP5 1158 aa8.97□□□□□ -0.97
CSMD1-211ENST00000523062 NPAS3Q8IXF0 933 aa8.97□□□□□ -0.97
CSMD1-211ENST00000523062 IRF7Q92985 503 aa8.97□□□□□ -0.97
CSMD1-211ENST00000523062 THAP11Q96EK4 314 aa8.97□□□□□ -0.97
CSMD1-211ENST00000523062 PNNQ9H307 717 aaKnown RBP8.97□□□□□ -0.97
CSMD1-211ENST00000523062 POLKQ9UBT6 870 aa8.97□□□□□ -0.97
CSMD1-211ENST00000523062 NXF1Q9UBU9 619 aaKnown RBP8.97□□□□□ -0.97
CSMD1-211ENST00000523062 NALCNQ8IZF0 1738 aa8.97□□□□□ -0.97
CSMD1-211ENST00000523062 MLLT3P42568 568 aaPredicted RBP8.96□□□□□ -0.98
CSMD1-211ENST00000523062 CCDC27Q2M243 656 aa8.96□□□□□ -0.98
CSMD1-211ENST00000523062 TCP11L2Q8N4U5 519 aa8.96□□□□□ -0.98
CSMD1-211ENST00000523062 WWC1Q8IX03 1113 aa8.95□□□□□ -0.98
CSMD1-211ENST00000523062 TRMT2AQ8IZ69 625 aaKnown RBP8.95□□□□□ -0.98
CSMD1-211ENST00000523062 FAM160A2Q8N612 972 aaPredicted RBP8.95□□□□□ -0.98
CSMD1-211ENST00000523062 SPRYD3Q8NCJ5 442 aa8.95□□□□□ -0.98
CSMD1-211ENST00000523062 NGDNQ8NEJ9 315 aaKnown RBP8.95□□□□□ -0.98
CSMD1-211ENST00000523062 MAPK8IP3Q9UPT6 1336 aa8.95□□□□□ -0.98
CSMD1-211ENST00000523062 USP31Q70CQ4 1352 aa8.95□□□□□ -0.98
CSMD1-211ENST00000523062 LRRC7Q96NW7 1537 aa8.95□□□□□ -0.98
CSMD1-211ENST00000523062 PPM1GO15355 546 aaPredicted RBP8.94□□□□□ -0.98
CSMD1-211ENST00000523062 WDR63Q8IWG1 891 aa8.94□□□□□ -0.98
CSMD1-211ENST00000523062 PMFBP1Q8TBY8 1022 aa8.94□□□□□ -0.98
CSMD1-211ENST00000523062 EMILIN1Q9Y6C2 1016 aa8.94□□□□□ -0.98
CSMD1-211ENST00000523062 FCHSD2O94868 740 aa8.93□□□□□ -0.98
CSMD1-211ENST00000523062 NEFMP07197 916 aa8.93□□□□□ -0.98
CSMD1-211ENST00000523062 MORN1Q5T089 497 aa8.93□□□□□ -0.98
CSMD1-211ENST00000523062 PLEKHF1Q96S99 279 aa8.93□□□□□ -0.98
CSMD1-211ENST00000523062 RRP7AQ9Y3A4 280 aaKnown RBP8.93□□□□□ -0.98
CSMD1-211ENST00000523062 MAP2P11137 1827 aaKnown RBP8.93□□□□□ -0.98
CSMD1-211ENST00000523062 RGPD8O14715 1765 aaPredicted RBP8.92□□□□□ -0.98
CSMD1-211ENST00000523062 USP54Q70EL1 1684 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms