RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 CIZ1Q9ULV3 898 aaPredicted RBP12.29□□□□□ -0.44
MCF2-209ENST00000520602 COL3A1P02461 1466 aaPredicted RBP12.29□□□□□ -0.44
MCF2-209ENST00000520602 SETD1BQ9UPS6 1966 aaKnown RBP12.29□□□□□ -0.44
MCF2-209ENST00000520602 XAGE3Q8WTP9 111 aa12.29□□□□□ -0.44
MCF2-209ENST00000520602 BOLA2Q9H3K6 86 aa12.29□□□□□ -0.44
MCF2-209ENST00000520602 NPHP3Q7Z494 1330 aa12.28□□□□□ -0.44
MCF2-209ENST00000520602 KSR2Q6VAB6 950 aa12.28□□□□□ -0.44
MCF2-209ENST00000520602 GLRX3O76003 335 aaKnown RBP12.28□□□□□ -0.44
MCF2-209ENST00000520602 NPHP1O15259 732 aa12.27□□□□□ -0.44
MCF2-209ENST00000520602 CAVIN1Q6NZI2 390 aaKnown RBP12.27□□□□□ -0.44
MCF2-209ENST00000520602 CDC42BPGQ6DT37 1551 aa12.27□□□□□ -0.45
MCF2-209ENST00000520602 UBE3BQ7Z3V4 1068 aa12.27□□□□□ -0.45
MCF2-209ENST00000520602 FMNL2Q96PY5 1086 aa12.27□□□□□ -0.45
MCF2-209ENST00000520602 USP26Q9BXU7 913 aa12.27□□□□□ -0.45
MCF2-209ENST00000520602 SMC3Q9UQE7 1217 aa12.27□□□□□ -0.45
MCF2-209ENST00000520602 ARHGEF25Q86VW2 580 aa12.27□□□□□ -0.45
MCF2-209ENST00000520602 SNX21Q969T3 373 aa12.27□□□□□ -0.45
MCF2-209ENST00000520602 PTCH1Q13635 1447 aa12.27□□□□□ -0.45
MCF2-209ENST00000520602 A0A087WZG4 1122 aa12.26□□□□□ -0.45
MCF2-209ENST00000520602 VPS37CA5D8V6 355 aaPredicted RBP12.26□□□□□ -0.45
MCF2-209ENST00000520602 FAM177BA6PVY3 158 aa12.26□□□□□ -0.45
MCF2-209ENST00000520602 TECPR2O15040 1411 aa12.26□□□□□ -0.45
MCF2-209ENST00000520602 MCM2P49736 904 aa12.26□□□□□ -0.45
MCF2-209ENST00000520602 ANKRD13DQ6ZTN6 518 aa12.26□□□□□ -0.45
MCF2-209ENST00000520602 ESYT1Q9BSJ8 1104 aa12.26□□□□□ -0.45
MCF2-209ENST00000520602 ZBTB3Q9H5J0 574 aa12.26□□□□□ -0.45
MCF2-209ENST00000520602 BABAM1Q9NWV8 329 aa12.26□□□□□ -0.45
MCF2-209ENST00000520602 GRM8O00222 908 aa12.25□□□□□ -0.45
MCF2-209ENST00000520602 SNRPA1P09661 255 aaKnown RBP12.25□□□□□ -0.45
MCF2-209ENST00000520602 RNF20Q5VTR2 975 aa12.25□□□□□ -0.45
MCF2-209ENST00000520602 CWC22Q9HCG8 908 aaKnown RBP12.25□□□□□ -0.45
MCF2-209ENST00000520602 OVOS2A0A0J9YW53 1432 aa12.25□□□□□ -0.45
MCF2-209ENST00000520602 OVOS2Q6IE36 1432 aa12.25□□□□□ -0.45
MCF2-209ENST00000520602 USP31Q70CQ4 1352 aa12.25□□□□□ -0.45
MCF2-209ENST00000520602 SOS1Q07889 1333 aaPredicted RBP12.25□□□□□ -0.45
MCF2-209ENST00000520602 PRAMEF22A3QJZ6 481 aa12.25□□□□□ -0.45
MCF2-209ENST00000520602 NAP1L5Q96NT1 182 aaPredicted RBP12.25□□□□□ -0.45
MCF2-209ENST00000520602 ECHDC1Q9NTX5 307 aa12.25□□□□□ -0.45
MCF2-209ENST00000520602 ZNF790Q6PG37 636 aa12.25□□□□□ -0.45
MCF2-209ENST00000520602 MAP2P11137 1827 aaKnown RBP12.25□□□□□ -0.45
MCF2-209ENST00000520602 JAKMIP1Q96N16 626 aaKnown RBP12.24□□□□□ -0.45
MCF2-209ENST00000520602 LINS1Q8NG48 757 aa12.24□□□□□ -0.45
MCF2-209ENST00000520602 KIF24Q5T7B8 1368 aa12.24□□□□□ -0.45
MCF2-209ENST00000520602 PROSER3Q2NL68 480 aa12.24□□□□□ -0.45
MCF2-209ENST00000520602 PRPF40BQ6NWY9 871 aaKnown RBP12.24□□□□□ -0.45
MCF2-209ENST00000520602 SYAP1Q96A49 352 aaPredicted RBP12.24□□□□□ -0.45
MCF2-209ENST00000520602 AXIN2Q9Y2T1 843 aa12.24□□□□□ -0.45
MCF2-209ENST00000520602 GIGYF1O75420 1035 aaPredicted RBP12.23□□□□□ -0.45
MCF2-209ENST00000520602 NPHP4O75161 1426 aaPredicted RBP12.23□□□□□ -0.45
MCF2-209ENST00000520602 USP32Q8NFA0 1604 aa12.23□□□□□ -0.45
MCF2-209ENST00000520602 ALDH1L1O75891 902 aa12.23□□□□□ -0.45
MCF2-209ENST00000520602 CASTP20810 708 aaKnown RBP12.23□□□□□ -0.45
MCF2-209ENST00000520602 CHMLP26374 656 aa12.23□□□□□ -0.45
MCF2-209ENST00000520602 DDX21Q9NR30 783 aaKnown RBP eCLIP12.23□□□□□ -0.45
MCF2-209ENST00000520602 KAT6BQ8WYB5 2073 aa12.23□□□□□ -0.45
MCF2-209ENST00000520602 KLHDC4Q8TBB5 520 aa12.23□□□□□ -0.45
MCF2-209ENST00000520602 SHPRHQ149N8 1683 aa12.22□□□□□ -0.45
MCF2-209ENST00000520602 MRE11P49959 708 aa12.22□□□□□ -0.45
MCF2-209ENST00000520602 ZNF496Q96IT1 587 aaPredicted RBP12.22□□□□□ -0.45
MCF2-209ENST00000520602 ZGPATQ8N5A5 531 aaKnown RBP12.22□□□□□ -0.45
MCF2-209ENST00000520602 ZCRB1Q8TBF4 217 aaKnown RBP12.22□□□□□ -0.45
MCF2-209ENST00000520602 CD2BP2O95400 341 aaKnown RBP12.22□□□□□ -0.45
MCF2-209ENST00000520602 FOSBP53539 338 aa12.22□□□□□ -0.45
MCF2-209ENST00000520602 CYP46A1Q9Y6A2 500 aa12.22□□□□□ -0.45
MCF2-209ENST00000520602 TMEM94Q12767 1356 aa12.21□□□□□ -0.45
MCF2-209ENST00000520602 HOXB7P09629 217 aa12.21□□□□□ -0.45
MCF2-209ENST00000520602 WASHC4Q2M389 1173 aa12.21□□□□□ -0.45
MCF2-209ENST00000520602 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.21□□□□□ -0.45
MCF2-209ENST00000520602 ANKARQ7Z5J8 1434 aa12.21□□□□□ -0.45
MCF2-209ENST00000520602 STK3Q13188 491 aa12.21□□□□□ -0.45
MCF2-209ENST00000520602 TMX3Q96JJ7 454 aa12.21□□□□□ -0.45
MCF2-209ENST00000520602 BICC1Q9H694 974 aaKnown RBP12.21□□□□□ -0.45
MCF2-209ENST00000520602 TMOD3Q9NYL9 352 aa12.21□□□□□ -0.45
MCF2-209ENST00000520602 NUTM2BA6NNL0 878 aaPredicted RBP12.21□□□□□ -0.46
MCF2-209ENST00000520602 NUTM2EB1AL46 878 aaPredicted RBP12.21□□□□□ -0.46
MCF2-209ENST00000520602 NUTM2AQ8IVF1 878 aaPredicted RBP12.21□□□□□ -0.46
MCF2-209ENST00000520602 RNF214Q8ND24 703 aa12.21□□□□□ -0.46
MCF2-209ENST00000520602 HIP1O00291 1037 aa12.2□□□□□ -0.46
MCF2-209ENST00000520602 BAG4O95429 457 aaKnown RBP12.2□□□□□ -0.46
MCF2-209ENST00000520602 GTF2E1P29083 439 aaPredicted RBP12.2□□□□□ -0.46
MCF2-209ENST00000520602 KIF6Q6ZMV9 814 aa12.2□□□□□ -0.46
MCF2-209ENST00000520602 DCAF5Q96JK2 942 aa12.2□□□□□ -0.46
MCF2-209ENST00000520602 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.2□□□□□ -0.46
MCF2-209ENST00000520602 CRB1P82279 1406 aa12.2□□□□□ -0.46
MCF2-209ENST00000520602 MSNP26038 577 aaKnown RBP12.2□□□□□ -0.46
MCF2-209ENST00000520602 BEND3Q5T5X7 828 aa12.2□□□□□ -0.46
MCF2-209ENST00000520602 SLC52A2Q9HAB3 445 aa12.2□□□□□ -0.46
MCF2-209ENST00000520602 ATP6V1DQ9Y5K8 247 aa12.2□□□□□ -0.46
MCF2-209ENST00000520602 H3BQV1 296 aa12.2□□□□□ -0.46
MCF2-209ENST00000520602 IFFO2Q5TF58 517 aa12.2□□□□□ -0.46
MCF2-209ENST00000520602 FAM184AQ8NB25 1140 aa12.2□□□□□ -0.46
MCF2-209ENST00000520602 PDRG1Q9NUG6 133 aa12.2□□□□□ -0.46
MCF2-209ENST00000520602 USP16Q9Y5T5 823 aa12.2□□□□□ -0.46
MCF2-209ENST00000520602 FKBP4Q02790 459 aaKnown RBP eCLIP12.19□□□□□ -0.46
MCF2-209ENST00000520602 CCDC57Q2TAC2 916 aa12.19□□□□□ -0.46
MCF2-209ENST00000520602 GRPEL1Q9HAV7 217 aa12.19□□□□□ -0.46
MCF2-209ENST00000520602 FIBPO43427 364 aa12.19□□□□□ -0.46
MCF2-209ENST00000520602 APPP05067 770 aa12.19□□□□□ -0.46
MCF2-209ENST00000520602 PSMA5P28066 241 aa12.19□□□□□ -0.46
MCF2-209ENST00000520602 SSH3Q8TE77 659 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms