RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 MMP10P09238 476 aa26.49■■□□□ 1.83
USP53-208ENST00000514305 RFC4P35249 363 aa26.49■■□□□ 1.83
USP53-208ENST00000514305 MTHFSDQ2M296 383 aaKnown RBP26.49■■□□□ 1.83
USP53-208ENST00000514305 NLGN1Q8N2Q7 840 aa26.49■■□□□ 1.83
USP53-208ENST00000514305 CICQ96RK0 1608 aaPredicted RBP26.49■■□□□ 1.83
USP53-208ENST00000514305 TJP1Q07157 1748 aa26.48■■□□□ 1.83
USP53-208ENST00000514305 RPS6KA4O75676 772 aa26.48■■□□□ 1.83
USP53-208ENST00000514305 RTF1Q92541 710 aaKnown RBP26.48■■□□□ 1.83
USP53-208ENST00000514305 LMOD3Q0VAK6 560 aa26.47■■□□□ 1.83
USP53-208ENST00000514305 ARHGEF1Q92888 912 aaKnown RBP26.47■■□□□ 1.83
USP53-208ENST00000514305 PHACTR3Q96KR7 559 aa26.47■■□□□ 1.83
USP53-208ENST00000514305 KIF13BQ9NQT8 1826 aa26.46■■□□□ 1.83
USP53-208ENST00000514305 GNAT3A8MTJ3 354 aa26.46■■□□□ 1.83
USP53-208ENST00000514305 HTATSF1O43719 755 aaKnown RBP26.46■■□□□ 1.83
USP53-208ENST00000514305 NFE2L2Q16236 605 aa26.46■■□□□ 1.83
USP53-208ENST00000514305 CCDC146Q8IYE0 955 aa26.46■■□□□ 1.83
USP53-208ENST00000514305 SLC52A2Q9HAB3 445 aa26.46■■□□□ 1.83
USP53-208ENST00000514305 MRC1P22897 1456 aa26.44■■□□□ 1.82
USP53-208ENST00000514305 CRKLP46109 303 aaKnown RBP26.44■■□□□ 1.82
USP53-208ENST00000514305 NGEFQ8N5V2 710 aa26.44■■□□□ 1.82
USP53-208ENST00000514305 LGR6Q9HBX8 967 aa26.43■■□□□ 1.82
USP53-208ENST00000514305 WWC3Q9ULE0 1092 aa26.43■■□□□ 1.82
USP53-208ENST00000514305 RNMTO43148 476 aaKnown RBP26.42■■□□□ 1.82
USP53-208ENST00000514305 GIGYF1O75420 1035 aaPredicted RBP26.42■■□□□ 1.82
USP53-208ENST00000514305 GYS1P13807 737 aa26.42■■□□□ 1.82
USP53-208ENST00000514305 ADAMTS7Q9UKP4 1686 aa26.41■■□□□ 1.82
USP53-208ENST00000514305 N4BP2Q86UW6 1770 aaPredicted RBP26.41■■□□□ 1.82
USP53-208ENST00000514305 TMPOP42166 694 aaKnown RBP26.41■■□□□ 1.82
USP53-208ENST00000514305 RIPK4P57078 832 aa26.41■■□□□ 1.82
USP53-208ENST00000514305 C1QTNF8P60827 252 aa26.4■■□□□ 1.82
USP53-208ENST00000514305 CCDC87Q9NVE4 849 aa26.4■■□□□ 1.82
USP53-208ENST00000514305 PARP3Q9Y6F1 533 aa26.4■■□□□ 1.82
USP53-208ENST00000514305 APAF1O14727 1248 aa26.38■■□□□ 1.81
USP53-208ENST00000514305 TGFB2P61812 414 aa26.38■■□□□ 1.81
USP53-208ENST00000514305 KIAA1551Q9HCM1 1747 aa26.38■■□□□ 1.81
USP53-208ENST00000514305 C10orf71Q711Q0 1435 aa26.38■■□□□ 1.81
USP53-208ENST00000514305 PXDNLA1KZ92 1463 aa26.37■■□□□ 1.81
USP53-208ENST00000514305 SLC39A6Q13433 755 aa26.36■■□□□ 1.81
USP53-208ENST00000514305 NEUROD2Q15784 382 aa26.36■■□□□ 1.81
USP53-208ENST00000514305 DNAJC10Q8IXB1 793 aa26.36■■□□□ 1.81
USP53-208ENST00000514305 ATP10DQ9P241 1426 aa26.36■■□□□ 1.81
USP53-208ENST00000514305 USP42Q9H9J4 1324 aaKnown RBP26.36■■□□□ 1.81
USP53-208ENST00000514305 TEFQ10587 303 aa26.35■■□□□ 1.81
USP53-208ENST00000514305 KCPQ6ZWJ8 1503 aa26.34■■□□□ 1.81
USP53-208ENST00000514305 UBR2Q8IWV8 1755 aa26.34■■□□□ 1.81
USP53-208ENST00000514305 CALD1Q05682 793 aaKnown RBP26.34■■□□□ 1.81
USP53-208ENST00000514305 INTS5Q6P9B9 1019 aaKnown RBP26.34■■□□□ 1.81
USP53-208ENST00000514305 SRP68Q9UHB9 627 aaKnown RBP26.34■■□□□ 1.81
USP53-208ENST00000514305 SENP3-EIF4A1A0A087X0R7 540 aa26.32■■□□□ 1.8
USP53-208ENST00000514305 ZPR1O75312 459 aa26.32■■□□□ 1.8
USP53-208ENST00000514305 A0A0G2JLW4 131 aa26.31■■□□□ 1.8
USP53-208ENST00000514305 TTC5Q8N0Z6 440 aa26.31■■□□□ 1.8
USP53-208ENST00000514305 RRP7AQ9Y3A4 280 aaKnown RBP26.31■■□□□ 1.8
USP53-208ENST00000514305 BRCA1P38398 1863 aaKnown RBP26.31■■□□□ 1.8
USP53-208ENST00000514305 ADCY9O60503 1353 aa26.31■■□□□ 1.8
USP53-208ENST00000514305 CYP19A1P11511 503 aaPredicted RBP26.3■■□□□ 1.8
USP53-208ENST00000514305 FKBP8Q14318 412 aa26.3■■□□□ 1.8
USP53-208ENST00000514305 CCDC27Q2M243 656 aa26.3■■□□□ 1.8
USP53-208ENST00000514305 POTEHQ6S545 545 aa26.3■■□□□ 1.8
USP53-208ENST00000514305 VSIG10Q8N0Z9 540 aa26.3■■□□□ 1.8
USP53-208ENST00000514305 GPBP1L1Q9HC44 474 aaPredicted RBP26.3■■□□□ 1.8
USP53-208ENST00000514305 BCS1LQ9Y276 419 aa26.3■■□□□ 1.8
USP53-208ENST00000514305 SOS1Q07889 1333 aaPredicted RBP26.29■■□□□ 1.8
USP53-208ENST00000514305 SIPA1L3O60292 1781 aaPredicted RBP26.28■■□□□ 1.8
USP53-208ENST00000514305 IL17REQ8NFR9 667 aa26.28■■□□□ 1.8
USP53-208ENST00000514305 DPEP1P16444 411 aa26.27■■□□□ 1.8
USP53-208ENST00000514305 MCM10Q7L590 875 aa26.27■■□□□ 1.8
USP53-208ENST00000514305 COL15A1P39059 1388 aa26.27■■□□□ 1.8
USP53-208ENST00000514305 ARFGEF1Q9Y6D6 1849 aa26.26■■□□□ 1.79
USP53-208ENST00000514305 CEMIPQ8WUJ3 1361 aa26.26■■□□□ 1.79
USP53-208ENST00000514305 USPL1Q5W0Q7 1092 aa26.26■■□□□ 1.79
USP53-208ENST00000514305 DDR1Q08345 913 aa26.25■■□□□ 1.79
USP53-208ENST00000514305 ZNF526Q8TF50 670 aaPredicted RBP26.25■■□□□ 1.79
USP53-208ENST00000514305 ZBTB1Q9Y2K1 713 aa26.25■■□□□ 1.79
USP53-208ENST00000514305 STARD3NLO95772 234 aa26.24■■□□□ 1.79
USP53-208ENST00000514305 TAF7Q15545 349 aaPredicted RBP26.24■■□□□ 1.79
USP53-208ENST00000514305 DCTN1Q14203 1278 aa26.23■■□□□ 1.79
USP53-208ENST00000514305 BABAM1Q9NWV8 329 aa26.23■■□□□ 1.79
USP53-208ENST00000514305 NARFQ9UHQ1 456 aa26.23■■□□□ 1.79
USP53-208ENST00000514305 TRIM35Q9UPQ4 493 aa26.23■■□□□ 1.79
USP53-208ENST00000514305 POLRMTO00411 1230 aaKnown RBP26.22■■□□□ 1.79
USP53-208ENST00000514305 ZNF790Q6PG37 636 aa26.22■■□□□ 1.79
USP53-208ENST00000514305 PIM2Q9P1W9 311 aa26.22■■□□□ 1.79
USP53-208ENST00000514305 AFDNP55196 1824 aaKnown RBP26.22■■□□□ 1.79
USP53-208ENST00000514305 CANXP27824 592 aaKnown RBP26.21■■□□□ 1.79
USP53-208ENST00000514305 TM4SF1P30408 202 aa26.21■■□□□ 1.79
USP53-208ENST00000514305 ARHGAP27Q6ZUM4 889 aa26.21■■□□□ 1.79
USP53-208ENST00000514305 SALL2Q9Y467 1007 aaPredicted RBP26.21■■□□□ 1.79
USP53-208ENST00000514305 BTBD11A6QL63 1104 aa26.2■■□□□ 1.78
USP53-208ENST00000514305 WDR63Q8IWG1 891 aa26.2■■□□□ 1.78
USP53-208ENST00000514305 WWC1Q8IX03 1113 aa26.2■■□□□ 1.78
USP53-208ENST00000514305 TEX13AQ9BXU3 409 aaPredicted RBP26.2■■□□□ 1.78
USP53-208ENST00000514305 HEG1Q9ULI3 1381 aa26.2■■□□□ 1.78
USP53-208ENST00000514305 ZNF496Q96IT1 587 aaPredicted RBP26.19■■□□□ 1.78
USP53-208ENST00000514305 DLG5Q8TDM6 1919 aa26.18■■□□□ 1.78
USP53-208ENST00000514305 KCNA3P22001 575 aa26.18■■□□□ 1.78
USP53-208ENST00000514305 HNRNPUQ00839 825 aaKnown RBP eCLIP26.18■■□□□ 1.78
USP53-208ENST00000514305 NRXN2Q9P2S2 1712 aa26.17■■□□□ 1.78
USP53-208ENST00000514305 A0A087WZG4 1122 aa26.17■■□□□ 1.78
USP53-208ENST00000514305 GNAI1P63096 354 aa26.17■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms