RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 KIAA0753Q2KHM9 967 aa12.95□□□□□ -0.34
LIMCH1-217ENST00000512946 TSNAXIP1Q2TAA8 658 aa12.95□□□□□ -0.34
LIMCH1-217ENST00000512946 CTAGE1Q96RT6 745 aa12.95□□□□□ -0.34
LIMCH1-217ENST00000512946 NUP88Q99567 741 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-217ENST00000512946 TRIM7Q9C029 511 aa12.95□□□□□ -0.34
LIMCH1-217ENST00000512946 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.95□□□□□ -0.34
LIMCH1-217ENST00000512946 GIGYF1O75420 1035 aaPredicted RBP12.94□□□□□ -0.34
LIMCH1-217ENST00000512946 SEPT14Q6ZU15 432 aa12.94□□□□□ -0.34
LIMCH1-217ENST00000512946 GAS2L2Q8NHY3 880 aa12.94□□□□□ -0.34
LIMCH1-217ENST00000512946 CYLC1P35663 651 aaPredicted RBP12.94□□□□□ -0.34
LIMCH1-217ENST00000512946 SELENOOQ9BVL4 669 aa12.94□□□□□ -0.34
LIMCH1-217ENST00000512946 UBE2HP62256 183 aa12.94□□□□□ -0.34
LIMCH1-217ENST00000512946 LRSAM1Q6UWE0 723 aa12.94□□□□□ -0.34
LIMCH1-217ENST00000512946 SAMD15Q9P1V8 674 aa12.94□□□□□ -0.34
LIMCH1-217ENST00000512946 ALDH3A1P30838 453 aa12.94□□□□□ -0.34
LIMCH1-217ENST00000512946 CEP120Q8N960 986 aa12.94□□□□□ -0.34
LIMCH1-217ENST00000512946 PPP1R14CQ8TAE6 165 aa12.94□□□□□ -0.34
LIMCH1-217ENST00000512946 LTV1Q96GA3 475 aaPredicted RBP12.94□□□□□ -0.34
LIMCH1-217ENST00000512946 MYCBPQ99417 103 aaPredicted RBP12.94□□□□□ -0.34
LIMCH1-217ENST00000512946 TRAK1Q9UPV9 953 aa12.93□□□□□ -0.34
LIMCH1-217ENST00000512946 ZWINTO95229 277 aa12.93□□□□□ -0.34
LIMCH1-217ENST00000512946 ZNF165P49910 485 aa12.93□□□□□ -0.34
LIMCH1-217ENST00000512946 CCDC174Q6PII3 467 aa12.93□□□□□ -0.34
LIMCH1-217ENST00000512946 NUTM1Q86Y26 1132 aa12.93□□□□□ -0.34
LIMCH1-217ENST00000512946 FAM114A2Q9NRY5 505 aa12.93□□□□□ -0.34
LIMCH1-217ENST00000512946 CASQ2O14958 399 aaPredicted RBP12.93□□□□□ -0.34
LIMCH1-217ENST00000512946 JAKMIP1Q96N16 626 aaKnown RBP12.93□□□□□ -0.34
LIMCH1-217ENST00000512946 IQCGQ9H095 443 aaKnown RBP12.93□□□□□ -0.34
LIMCH1-217ENST00000512946 A0A1W2PRG0 241 aa12.93□□□□□ -0.34
LIMCH1-217ENST00000512946 ATP11AP98196 1134 aa12.93□□□□□ -0.34
LIMCH1-217ENST00000512946 CCDC38Q502W7 563 aa12.93□□□□□ -0.34
LIMCH1-217ENST00000512946 ATF7IPQ6VMQ6 1270 aa12.93□□□□□ -0.34
LIMCH1-217ENST00000512946 PNISRQ8TF01 805 aaKnown RBP12.93□□□□□ -0.34
LIMCH1-217ENST00000512946 ZHX3Q9H4I2 956 aa12.93□□□□□ -0.34
LIMCH1-217ENST00000512946 ACTN2P35609 894 aa12.92□□□□□ -0.34
LIMCH1-217ENST00000512946 IKQ13123 557 aaPredicted RBP12.92□□□□□ -0.34
LIMCH1-217ENST00000512946 LRRC27Q9C0I9 530 aa12.92□□□□□ -0.34
LIMCH1-217ENST00000512946 ATP2A1O14983 1001 aa12.92□□□□□ -0.34
LIMCH1-217ENST00000512946 ZNF853P0CG23 659 aa12.92□□□□□ -0.34
LIMCH1-217ENST00000512946 MXRA7P84157 204 aa12.92□□□□□ -0.34
LIMCH1-217ENST00000512946 LRRC45Q96CN5 670 aa12.92□□□□□ -0.34
LIMCH1-217ENST00000512946 CLNS1AP54105 237 aaKnown RBP12.92□□□□□ -0.34
LIMCH1-217ENST00000512946 CEP128Q6ZU80 1094 aa12.92□□□□□ -0.34
LIMCH1-217ENST00000512946 HDXQ7Z353 690 aa12.92□□□□□ -0.34
LIMCH1-217ENST00000512946 FAM76AQ8TAV0 307 aa12.92□□□□□ -0.34
LIMCH1-217ENST00000512946 TRMT1Q9NXH9 659 aaKnown RBP12.92□□□□□ -0.34
LIMCH1-217ENST00000512946 TMC6Q7Z403 805 aa12.91□□□□□ -0.34
LIMCH1-217ENST00000512946 AMPD3Q01432 767 aa12.91□□□□□ -0.34
LIMCH1-217ENST00000512946 AP1ARQ63HQ0 302 aa12.91□□□□□ -0.34
LIMCH1-217ENST00000512946 CPLX4Q7Z7G2 160 aa12.91□□□□□ -0.34
LIMCH1-217ENST00000512946 MAP2K2P36507 400 aa12.91□□□□□ -0.34
LIMCH1-217ENST00000512946 TNPO1Q92973 898 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-217ENST00000512946 STMN2Q93045 179 aa12.91□□□□□ -0.34
LIMCH1-217ENST00000512946 GBP1P32455 592 aa12.91□□□□□ -0.34
LIMCH1-217ENST00000512946 ATP6V1AP38606 617 aa12.91□□□□□ -0.34
LIMCH1-217ENST00000512946 ZBTB16Q05516 673 aa12.91□□□□□ -0.34
LIMCH1-217ENST00000512946 TDRD12Q587J7 1177 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-217ENST00000512946 RPUSD2Q8IZ73 545 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-217ENST00000512946 TCP11L2Q8N4U5 519 aa12.91□□□□□ -0.34
LIMCH1-217ENST00000512946 RABGAP1Q9Y3P9 1069 aa12.91□□□□□ -0.34
LIMCH1-217ENST00000512946 U3KPZ7 1027 aaPredicted RBP12.91□□□□□ -0.34
LIMCH1-217ENST00000512946 CCDC97Q96F63 343 aaPredicted RBP12.9□□□□□ -0.34
LIMCH1-217ENST00000512946 TTC12Q9H892 705 aaPredicted RBP12.9□□□□□ -0.34
LIMCH1-217ENST00000512946 CUX2O14529 1486 aa12.9□□□□□ -0.34
LIMCH1-217ENST00000512946 PPFIA3O75145 1194 aa12.9□□□□□ -0.34
LIMCH1-217ENST00000512946 STMN1P16949 149 aa12.9□□□□□ -0.34
LIMCH1-217ENST00000512946 LMBR1Q8WVP7 490 aa12.9□□□□□ -0.34
LIMCH1-217ENST00000512946 UBAC1Q9BSL1 405 aa12.9□□□□□ -0.34
LIMCH1-217ENST00000512946 ATP5DP30049 168 aa12.9□□□□□ -0.34
LIMCH1-217ENST00000512946 WHAMMP3Q1A5X7 153 aa12.9□□□□□ -0.34
LIMCH1-217ENST00000512946 ARHGAP24Q8N264 748 aa12.9□□□□□ -0.34
LIMCH1-217ENST00000512946 RAB3IL1Q8TBN0 382 aa12.9□□□□□ -0.34
LIMCH1-217ENST00000512946 KIAA1524Q8TCG1 905 aa12.9□□□□□ -0.34
LIMCH1-217ENST00000512946 CTNNA2P26232 953 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 VAV2P52735 878 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 SF3B2Q13435 895 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 NBPF8Q3BBV2 869 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 PHLDB2Q86SQ0 1253 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 SPATS2Q86XZ4 545 aaKnown RBP12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 FAM200AQ8TCP9 573 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 ERO1AQ96HE7 468 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 JADE2Q9NQC1 790 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 LIMCH1Q9UPQ0 1083 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 MRVI1Q9Y6F6 885 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 RPGRIP1LQ68CZ1 1315 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 RFC1P35251 1148 aaPredicted RBP12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 KRT83P78385 493 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 MAP7Q14244 749 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 TWISTNBQ3B726 338 aaPredicted RBP12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 JAKMIP2Q96AA8 810 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 SCLT1Q96NL6 688 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 BAZ1AQ9NRL2 1556 aaPredicted RBP12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 CIB2O75838 187 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 MCM6Q14566 821 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 TTC39AQ5SRH9 613 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 INPP5BP32019 993 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 AKAP2Q9Y2D5 859 aa12.89□□□□□ -0.35
LIMCH1-217ENST00000512946 RAB11FIP3O75154 756 aa12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 PCK1P35558 622 aa12.88□□□□□ -0.35
LIMCH1-217ENST00000512946 STK3Q13188 491 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms