RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 ZNF526Q8TF50 670 aaPredicted RBP15.04■□□□□ -0
LIMCH1-214ENST00000512228 BCS1LQ9Y276 419 aa15.04■□□□□ -0
LIMCH1-214ENST00000512228 CANXP27824 592 aaKnown RBP15.03■□□□□ -0
LIMCH1-214ENST00000512228 NFIXQ14938 502 aa15.03■□□□□ -0
LIMCH1-214ENST00000512228 AFDNP55196 1824 aaKnown RBP15.03■□□□□ -0
LIMCH1-214ENST00000512228 PRAMEF22A3QJZ6 481 aa15.02■□□□□ -0
LIMCH1-214ENST00000512228 DCTN1Q14203 1278 aa15.02■□□□□ -0
LIMCH1-214ENST00000512228 ZNF790Q6PG37 636 aa15.02■□□□□ -0
LIMCH1-214ENST00000512228 VSIG10Q8N0Z9 540 aa15.02■□□□□ -0
LIMCH1-214ENST00000512228 NARFQ9UHQ1 456 aa15.02■□□□□ -0
LIMCH1-214ENST00000512228 CEMIPQ8WUJ3 1361 aa15.01□□□□□ -0.01
LIMCH1-214ENST00000512228 A1BGP04217 495 aa15.01□□□□□ -0.01
LIMCH1-214ENST00000512228 U2AF1L5P0DN76 240 aaPredicted RBP15.01□□□□□ -0.01
LIMCH1-214ENST00000512228 EIF5P55010 431 aaKnown RBP15.01□□□□□ -0.01
LIMCH1-214ENST00000512228 U2AF1Q01081 240 aaKnown RBP eCLIP15.01□□□□□ -0.01
LIMCH1-214ENST00000512228 MCM10Q7L590 875 aa15.01□□□□□ -0.01
LIMCH1-214ENST00000512228 GAS2L2Q8NHY3 880 aa15.01□□□□□ -0.01
LIMCH1-214ENST00000512228 ZPR1O75312 459 aa15□□□□□ -0.01
LIMCH1-214ENST00000512228 GIGYF1O75420 1035 aaPredicted RBP15□□□□□ -0.01
LIMCH1-214ENST00000512228 FCHSD2O94868 740 aa15□□□□□ -0.01
LIMCH1-214ENST00000512228 PIP4K2AP48426 406 aaPredicted RBP15□□□□□ -0.01
LIMCH1-214ENST00000512228 ARHGAP27Q6ZUM4 889 aa15□□□□□ -0.01
LIMCH1-214ENST00000512228 USP16Q9Y5T5 823 aa15□□□□□ -0.01
LIMCH1-214ENST00000512228 COL15A1P39059 1388 aa14.99□□□□□ -0.01
LIMCH1-214ENST00000512228 HEG1Q9ULI3 1381 aa14.99□□□□□ -0.01
LIMCH1-214ENST00000512228 TEFQ10587 303 aa14.99□□□□□ -0.01
LIMCH1-214ENST00000512228 TBC1D2BQ9UPU7 963 aa14.99□□□□□ -0.01
LIMCH1-214ENST00000512228 SENP3-EIF4A1A0A087X0R7 540 aa14.98□□□□□ -0.01
LIMCH1-214ENST00000512228 BICDL1Q6ZP65 573 aa14.98□□□□□ -0.01
LIMCH1-214ENST00000512228 TTC5Q8N0Z6 440 aa14.98□□□□□ -0.01
LIMCH1-214ENST00000512228 CFAP53Q96M91 514 aa14.98□□□□□ -0.01
LIMCH1-214ENST00000512228 MIS18AQ9NYP9 233 aa14.98□□□□□ -0.01
LIMCH1-214ENST00000512228 ARFGEF1Q9Y6D6 1849 aa14.97□□□□□ -0.01
LIMCH1-214ENST00000512228 BTBD11A6QL63 1104 aa14.97□□□□□ -0.01
LIMCH1-214ENST00000512228 SERPINB2P05120 415 aa14.97□□□□□ -0.01
LIMCH1-214ENST00000512228 TBC1D9BQ66K14 1250 aa14.97□□□□□ -0.01
LIMCH1-214ENST00000512228 CCDC24Q8N4L8 307 aa14.97□□□□□ -0.01
LIMCH1-214ENST00000512228 GPBP1L1Q9HC44 474 aaPredicted RBP14.97□□□□□ -0.01
LIMCH1-214ENST00000512228 PIM2Q9P1W9 311 aa14.97□□□□□ -0.01
LIMCH1-214ENST00000512228 NRXN2Q9P2S2 1712 aa14.97□□□□□ -0.01
LIMCH1-214ENST00000512228 KIF3CO14782 793 aa14.96□□□□□ -0.01
LIMCH1-214ENST00000512228 SBF1O95248 1867 aa14.96□□□□□ -0.01
LIMCH1-214ENST00000512228 STARD3NLO95772 234 aa14.96□□□□□ -0.01
LIMCH1-214ENST00000512228 PRELPP51888 382 aa14.96□□□□□ -0.01
LIMCH1-214ENST00000512228 PLEKHF1Q96S99 279 aa14.96□□□□□ -0.01
LIMCH1-214ENST00000512228 NUDCQ9Y266 331 aa14.96□□□□□ -0.01
LIMCH1-214ENST00000512228 CARMIL3Q8ND23 1372 aa14.96□□□□□ -0.02
LIMCH1-214ENST00000512228 DLG5Q8TDM6 1919 aa14.96□□□□□ -0.02
LIMCH1-214ENST00000512228 NBPF26B4DH59 902 aa14.94□□□□□ -0.02
LIMCH1-214ENST00000512228 DALRD3Q5D0E6 543 aaKnown RBP14.94□□□□□ -0.02
LIMCH1-214ENST00000512228 NBPF10Q6P3W6 841 aaKnown RBP14.94□□□□□ -0.02
LIMCH1-214ENST00000512228 NBPF15Q8N660 670 aa14.94□□□□□ -0.02
LIMCH1-214ENST00000512228 FMNL2Q96PY5 1086 aa14.94□□□□□ -0.02
LIMCH1-214ENST00000512228 ZNF330Q9Y3S2 320 aaPredicted RBP14.94□□□□□ -0.02
LIMCH1-214ENST00000512228 ANKRD31Q8N7Z5 1873 aa14.94□□□□□ -0.02
LIMCH1-214ENST00000512228 CAMTA2O94983 1202 aa14.93□□□□□ -0.02
LIMCH1-214ENST00000512228 C9orf131Q5VYM1 1079 aa14.93□□□□□ -0.02
LIMCH1-214ENST00000512228 THUMPD2Q9BTF0 503 aaKnown RBP14.93□□□□□ -0.02
LIMCH1-214ENST00000512228 IL6STP40189 918 aaPredicted RBP14.92□□□□□ -0.02
LIMCH1-214ENST00000512228 TEX13AQ9BXU3 409 aaPredicted RBP14.92□□□□□ -0.02
LIMCH1-214ENST00000512228 CCDC88AQ3V6T2 1871 aa14.91□□□□□ -0.02
LIMCH1-214ENST00000512228 NMRK2Q9NPI5 230 aa14.91□□□□□ -0.02
LIMCH1-214ENST00000512228 A0A087WZG4 1122 aa14.9□□□□□ -0.02
LIMCH1-214ENST00000512228 PRR5LQ6MZQ0 368 aa14.9□□□□□ -0.02
LIMCH1-214ENST00000512228 C2CD5Q86YS7 1000 aa14.9□□□□□ -0.02
LIMCH1-214ENST00000512228 DLEC1Q9Y238 1755 aa14.9□□□□□ -0.02
LIMCH1-214ENST00000512228 HTATSF1O43719 755 aaKnown RBP14.89□□□□□ -0.03
LIMCH1-214ENST00000512228 SNRPA1P09661 255 aaKnown RBP14.89□□□□□ -0.03
LIMCH1-214ENST00000512228 RASSF7Q02833 373 aa14.89□□□□□ -0.03
LIMCH1-214ENST00000512228 TAF7Q15545 349 aaPredicted RBP14.89□□□□□ -0.03
LIMCH1-214ENST00000512228 RTF1Q92541 710 aaKnown RBP14.89□□□□□ -0.03
LIMCH1-214ENST00000512228 SCN7AQ01118 1682 aa14.88□□□□□ -0.03
LIMCH1-214ENST00000512228 DDX10Q13206 875 aaKnown RBP14.88□□□□□ -0.03
LIMCH1-214ENST00000512228 DZIP3Q86Y13 1208 aaKnown RBP14.88□□□□□ -0.03
LIMCH1-214ENST00000512228 RNF181Q9P0P0 153 aa14.87□□□□□ -0.03
LIMCH1-214ENST00000512228 COL11A2P13942 1736 aaPredicted RBP14.86□□□□□ -0.03
LIMCH1-214ENST00000512228 BCORQ6W2J9 1755 aa14.86□□□□□ -0.03
LIMCH1-214ENST00000512228 HLFQ16534 295 aa14.86□□□□□ -0.03
LIMCH1-214ENST00000512228 TTLL6Q8N841 843 aa14.86□□□□□ -0.03
LIMCH1-214ENST00000512228 SLX4Q8IY92 1834 aa14.86□□□□□ -0.03
LIMCH1-214ENST00000512228 H0YIN7 160 aa14.85□□□□□ -0.03
LIMCH1-214ENST00000512228 NFE2L2Q16236 605 aa14.85□□□□□ -0.03
LIMCH1-214ENST00000512228 ZNF622Q969S3 477 aaKnown RBP eCLIP14.85□□□□□ -0.03
LIMCH1-214ENST00000512228 SETDB2Q96T68 719 aa14.85□□□□□ -0.03
LIMCH1-214ENST00000512228 BRIP1Q9BX63 1249 aa14.85□□□□□ -0.03
LIMCH1-214ENST00000512228 ZNF219Q9P2Y4 722 aaPredicted RBP14.85□□□□□ -0.03
LIMCH1-214ENST00000512228 KDM3BQ7LBC6 1761 aa14.85□□□□□ -0.03
LIMCH1-214ENST00000512228 NFKBIEO00221 500 aa14.84□□□□□ -0.03
LIMCH1-214ENST00000512228 HSPA6P17066 643 aa14.84□□□□□ -0.03
LIMCH1-214ENST00000512228 EIF4A1P60842 406 aaKnown RBP14.84□□□□□ -0.03
LIMCH1-214ENST00000512228 NGEFQ8N5V2 710 aa14.84□□□□□ -0.03
LIMCH1-214ENST00000512228 RRAGCQ9HB90 399 aa14.84□□□□□ -0.03
LIMCH1-214ENST00000512228 CACNA1SQ13698 1873 aa14.84□□□□□ -0.03
LIMCH1-214ENST00000512228 C21orf2O43822 256 aa14.83□□□□□ -0.04
LIMCH1-214ENST00000512228 SRGNP10124 158 aa14.82□□□□□ -0.04
LIMCH1-214ENST00000512228 FER1L6Q2WGJ9 1857 aa14.81□□□□□ -0.04
LIMCH1-214ENST00000512228 FAM177BA6PVY3 158 aa14.81□□□□□ -0.04
LIMCH1-214ENST00000512228 TOMM70O94826 608 aa14.81□□□□□ -0.04
LIMCH1-214ENST00000512228 PDE6BP35913 854 aa14.81□□□□□ -0.04
LIMCH1-214ENST00000512228 CLEC4GQ6UXB4 293 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms