RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 DCTN1Q14203 1278 aa23.9■■□□□ 1.42
TPM3-220ENST00000509601 USPL1Q5W0Q7 1092 aa23.9■■□□□ 1.42
TPM3-220ENST00000509601 PLEKHF1Q96S99 279 aa23.9■■□□□ 1.42
TPM3-220ENST00000509601 NARFQ9UHQ1 456 aa23.9■■□□□ 1.42
TPM3-220ENST00000509601 WWC3Q9ULE0 1092 aa23.9■■□□□ 1.42
TPM3-220ENST00000509601 ZPR1O75312 459 aa23.89■■□□□ 1.41
TPM3-220ENST00000509601 CANXP27824 592 aaKnown RBP23.89■■□□□ 1.41
TPM3-220ENST00000509601 RTF1Q92541 710 aaKnown RBP23.89■■□□□ 1.41
TPM3-220ENST00000509601 A0A0G2JLW4 131 aa23.88■■□□□ 1.41
TPM3-220ENST00000509601 EIF5P55010 431 aaKnown RBP23.88■■□□□ 1.41
TPM3-220ENST00000509601 RALBP1Q15311 655 aa23.88■■□□□ 1.41
TPM3-220ENST00000509601 FMNL2Q96PY5 1086 aa23.88■■□□□ 1.41
TPM3-220ENST00000509601 TEX13AQ9BXU3 409 aaPredicted RBP23.88■■□□□ 1.41
TPM3-220ENST00000509601 BCL2L12Q9HB09 334 aa23.88■■□□□ 1.41
TPM3-220ENST00000509601 KIF13BQ9NQT8 1826 aa23.87■■□□□ 1.41
TPM3-220ENST00000509601 C10orf71Q711Q0 1435 aa23.86■■□□□ 1.41
TPM3-220ENST00000509601 COL15A1P39059 1388 aa23.86■■□□□ 1.41
TPM3-220ENST00000509601 POLRMTO00411 1230 aaKnown RBP23.85■■□□□ 1.41
TPM3-220ENST00000509601 DPEP1P16444 411 aa23.85■■□□□ 1.41
TPM3-220ENST00000509601 PXDNLA1KZ92 1463 aa23.85■■□□□ 1.41
TPM3-220ENST00000509601 A1BGP04217 495 aa23.84■■□□□ 1.41
TPM3-220ENST00000509601 KCNA3P22001 575 aa23.84■■□□□ 1.41
TPM3-220ENST00000509601 USP16Q9Y5T5 823 aa23.84■■□□□ 1.41
TPM3-220ENST00000509601 NFIXQ14938 502 aa23.83■■□□□ 1.41
TPM3-220ENST00000509601 KIAA1551Q9HCM1 1747 aa23.83■■□□□ 1.41
TPM3-220ENST00000509601 PRAMEF22A3QJZ6 481 aa23.82■■□□□ 1.4
TPM3-220ENST00000509601 TAF7Q15545 349 aaPredicted RBP23.82■■□□□ 1.4
TPM3-220ENST00000509601 IL6STP40189 918 aaPredicted RBP23.81■■□□□ 1.4
TPM3-220ENST00000509601 MIS18AQ9NYP9 233 aa23.81■■□□□ 1.4
TPM3-220ENST00000509601 N4BP2Q86UW6 1770 aaPredicted RBP23.8■■□□□ 1.4
TPM3-220ENST00000509601 A0A087WZG4 1122 aa23.8■■□□□ 1.4
TPM3-220ENST00000509601 NFE2L2Q16236 605 aa23.8■■□□□ 1.4
TPM3-220ENST00000509601 NEFMP07197 916 aa23.79■■□□□ 1.4
TPM3-220ENST00000509601 TBC1D2BQ9UPU7 963 aa23.79■■□□□ 1.4
TPM3-220ENST00000509601 SNRPA1P09661 255 aaKnown RBP23.78■■□□□ 1.4
TPM3-220ENST00000509601 PNNQ9H307 717 aaKnown RBP23.78■■□□□ 1.4
TPM3-220ENST00000509601 BCS1LQ9Y276 419 aa23.78■■□□□ 1.4
TPM3-220ENST00000509601 SERPINB2P05120 415 aa23.77■■□□□ 1.4
TPM3-220ENST00000509601 MYBBP1AQ9BQG0 1328 aaKnown RBP23.76■■□□□ 1.39
TPM3-220ENST00000509601 CHRNA5P30532 468 aa23.75■■□□□ 1.39
TPM3-220ENST00000509601 PIP4K2AP48426 406 aaPredicted RBP23.75■■□□□ 1.39
TPM3-220ENST00000509601 THUMPD2Q9BTF0 503 aaKnown RBP23.75■■□□□ 1.39
TPM3-220ENST00000509601 PIM2Q9P1W9 311 aa23.75■■□□□ 1.39
TPM3-220ENST00000509601 ZNF330Q9Y3S2 320 aaPredicted RBP23.75■■□□□ 1.39
TPM3-220ENST00000509601 DLG5Q8TDM6 1919 aa23.74■■□□□ 1.39
TPM3-220ENST00000509601 TBC1D9BQ66K14 1250 aa23.74■■□□□ 1.39
TPM3-220ENST00000509601 BICDL1Q6ZP65 573 aa23.74■■□□□ 1.39
TPM3-220ENST00000509601 CAMTA2O94983 1202 aa23.73■■□□□ 1.39
TPM3-220ENST00000509601 NBPF26B4DH59 902 aa23.72■■□□□ 1.39
TPM3-220ENST00000509601 NBPF10Q6P3W6 841 aaKnown RBP23.72■■□□□ 1.39
TPM3-220ENST00000509601 NBPF15Q8N660 670 aa23.72■■□□□ 1.39
TPM3-220ENST00000509601 PNISRQ8TF01 805 aaKnown RBP23.72■■□□□ 1.39
TPM3-220ENST00000509601 MAPK8IP3Q9UPT6 1336 aa23.72■■□□□ 1.39
TPM3-220ENST00000509601 AFDNP55196 1824 aaKnown RBP23.72■■□□□ 1.39
TPM3-220ENST00000509601 ARHGAP27Q6ZUM4 889 aa23.71■■□□□ 1.39
TPM3-220ENST00000509601 BRCA1P38398 1863 aaKnown RBP23.7■■□□□ 1.39
TPM3-220ENST00000509601 ADCY9O60503 1353 aa23.7■■□□□ 1.38
TPM3-220ENST00000509601 EIF4A1P60842 406 aaKnown RBP23.7■■□□□ 1.38
TPM3-220ENST00000509601 DALRD3Q5D0E6 543 aaKnown RBP23.7■■□□□ 1.38
TPM3-220ENST00000509601 NRXN2Q9P2S2 1712 aa23.7■■□□□ 1.38
TPM3-220ENST00000509601 ATP10DQ9P241 1426 aa23.69■■□□□ 1.38
TPM3-220ENST00000509601 RIPK4P57078 832 aa23.69■■□□□ 1.38
TPM3-220ENST00000509601 DZIP3Q86Y13 1208 aaKnown RBP23.69■■□□□ 1.38
TPM3-220ENST00000509601 PRKRIP1Q9H875 184 aaPredicted RBP23.69■■□□□ 1.38
TPM3-220ENST00000509601 GIGYF1O75420 1035 aaPredicted RBP23.68■■□□□ 1.38
TPM3-220ENST00000509601 TMPOP42166 694 aaKnown RBP23.68■■□□□ 1.38
TPM3-220ENST00000509601 NPM2Q86SE8 214 aaKnown RBP23.68■■□□□ 1.38
TPM3-220ENST00000509601 C1QTNF8P60827 252 aa23.66■■□□□ 1.38
TPM3-220ENST00000509601 CARMIL3Q8ND23 1372 aa23.65■■□□□ 1.38
TPM3-220ENST00000509601 PRR5LQ6MZQ0 368 aa23.65■■□□□ 1.38
TPM3-220ENST00000509601 CLEC4GQ6UXB4 293 aa23.65■■□□□ 1.38
TPM3-220ENST00000509601 CCDC146Q8IYE0 955 aa23.65■■□□□ 1.38
TPM3-220ENST00000509601 SETDB2Q96T68 719 aa23.65■■□□□ 1.38
TPM3-220ENST00000509601 ADAMTS8Q9UP79 889 aa23.65■■□□□ 1.38
TPM3-220ENST00000509601 CCDC24Q8N4L8 307 aa23.64■■□□□ 1.37
TPM3-220ENST00000509601 C2CD5Q86YS7 1000 aa23.63■■□□□ 1.37
TPM3-220ENST00000509601 BRIP1Q9BX63 1249 aa23.63■■□□□ 1.37
TPM3-220ENST00000509601 RRP7AQ9Y3A4 280 aaKnown RBP23.63■■□□□ 1.37
TPM3-220ENST00000509601 ARFGEF1Q9Y6D6 1849 aa23.63■■□□□ 1.37
TPM3-220ENST00000509601 KDM3BQ7LBC6 1761 aa23.63■■□□□ 1.37
TPM3-220ENST00000509601 H0YIN7 160 aa23.62■■□□□ 1.37
TPM3-220ENST00000509601 SCN7AQ01118 1682 aa23.62■■□□□ 1.37
TPM3-220ENST00000509601 ZEB1P37275 1124 aaPredicted RBP23.61■■□□□ 1.37
TPM3-220ENST00000509601 ZNF526Q8TF50 670 aaPredicted RBP23.61■■□□□ 1.37
TPM3-220ENST00000509601 RUNDC1Q96C34 613 aa23.61■■□□□ 1.37
TPM3-220ENST00000509601 GPBP1L1Q9HC44 474 aaPredicted RBP23.61■■□□□ 1.37
TPM3-220ENST00000509601 NEUROD2Q15784 382 aa23.6■■□□□ 1.37
TPM3-220ENST00000509601 HLFQ16534 295 aa23.6■■□□□ 1.37
TPM3-220ENST00000509601 TTLL6Q8N841 843 aa23.6■■□□□ 1.37
TPM3-220ENST00000509601 BABAM1Q9NWV8 329 aa23.6■■□□□ 1.37
TPM3-220ENST00000509601 TSPYL4Q9UJ04 414 aa23.6■■□□□ 1.37
TPM3-220ENST00000509601 TRIM35Q9UPQ4 493 aa23.6■■□□□ 1.37
TPM3-220ENST00000509601 RGL2O15211 777 aa23.59■■□□□ 1.37
TPM3-220ENST00000509601 WDR43Q15061 677 aaKnown RBP eCLIP23.59■■□□□ 1.37
TPM3-220ENST00000509601 PDE6BP35913 854 aa23.58■■□□□ 1.37
TPM3-220ENST00000509601 C9orf131Q5VYM1 1079 aa23.58■■□□□ 1.37
TPM3-220ENST00000509601 LMOD3Q0VAK6 560 aa23.57■■□□□ 1.36
TPM3-220ENST00000509601 NGEFQ8N5V2 710 aa23.57■■□□□ 1.36
TPM3-220ENST00000509601 CNBD1Q8NA66 436 aa23.57■■□□□ 1.36
TPM3-220ENST00000509601 PDZRN3Q9UPQ7 1066 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms