RNA–Protein interactions for RNA: ENST00000509330.5

PHF3-209, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best) BASIC

Gene PHF3, Length 2,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-209ENST00000509330 ZCRB1Q8TBF4 217 aaKnown RBP18.45■□□□□ 0.54
PHF3-209ENST00000509330 C9orf78Q9NZ63 289 aaPredicted RBP18.45■□□□□ 0.54
PHF3-209ENST00000509330 PTCD1O75127 700 aaKnown RBP18.44■□□□□ 0.54
PHF3-209ENST00000509330 BTG4Q9NY30 223 aa18.44■□□□□ 0.54
PHF3-209ENST00000509330 SURF6O75683 361 aaKnown RBP18.43■□□□□ 0.54
PHF3-209ENST00000509330 PDIA6Q15084 440 aa18.43■□□□□ 0.54
PHF3-209ENST00000509330 RIC3Q7Z5B4 369 aa18.43■□□□□ 0.54
PHF3-209ENST00000509330 XAGE3Q8WTP9 111 aa18.43■□□□□ 0.54
PHF3-209ENST00000509330 TBC1D2Q9BYX2 928 aa18.42■□□□□ 0.54
PHF3-209ENST00000509330 LRRCC1Q9C099 1032 aa18.42■□□□□ 0.54
PHF3-209ENST00000509330 SDSP20132 328 aa18.42■□□□□ 0.54
PHF3-209ENST00000509330 COPS6Q7L5N1 327 aa18.42■□□□□ 0.54
PHF3-209ENST00000509330 COL5A2P05997 1499 aaPredicted RBP18.42■□□□□ 0.54
PHF3-209ENST00000509330 KSR2Q6VAB6 950 aa18.42■□□□□ 0.54
PHF3-209ENST00000509330 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.42■□□□□ 0.541e-16■■■■□ 23.4
PHF3-209ENST00000509330 CDC45O75419 566 aa18.41■□□□□ 0.54
PHF3-209ENST00000509330 IL2RBP14784 551 aa18.41■□□□□ 0.54
PHF3-209ENST00000509330 BECN1Q14457 450 aa18.41■□□□□ 0.54
PHF3-209ENST00000509330 RTL5Q5HYW3 569 aaPredicted RBP18.41■□□□□ 0.54
PHF3-209ENST00000509330 NUTM1Q86Y26 1132 aa18.41■□□□□ 0.54
PHF3-209ENST00000509330 DDX21Q9NR30 783 aaKnown RBP eCLIP18.41■□□□□ 0.54
PHF3-209ENST00000509330 CRYBG1Q9Y4K1 1723 aa18.41■□□□□ 0.54
PHF3-209ENST00000509330 HEG1Q9ULI3 1381 aa18.41■□□□□ 0.54
PHF3-209ENST00000509330 HYPKQ9NX55 129 aa18.41■□□□□ 0.54
PHF3-209ENST00000509330 OVOS2A0A0G2JMS6 1433 aa18.39■□□□□ 0.54
PHF3-209ENST00000509330 PDE1AP54750 535 aa18.39■□□□□ 0.54
PHF3-209ENST00000509330 ZNF330Q9Y3S2 320 aaPredicted RBP18.39■□□□□ 0.54
PHF3-209ENST00000509330 MAP4K4O95819 1239 aaPredicted RBP18.39■□□□□ 0.53
PHF3-209ENST00000509330 FMNL2Q96PY5 1086 aa18.39■□□□□ 0.53
PHF3-209ENST00000509330 PA2G4Q9UQ80 394 aaKnown RBP18.39■□□□□ 0.53
PHF3-209ENST00000509330 A0A0G2JS52 829 aa18.39■□□□□ 0.53
PHF3-209ENST00000509330 SNRPA1P09661 255 aaKnown RBP18.39■□□□□ 0.53
PHF3-209ENST00000509330 OS9Q13438 667 aaPredicted RBP18.39■□□□□ 0.53
PHF3-209ENST00000509330 MYD88Q99836 296 aa18.39■□□□□ 0.53
PHF3-209ENST00000509330 RBM42Q9BTD8 480 aaKnown RBP18.39■□□□□ 0.53
PHF3-209ENST00000509330 PCDH11XQ9BZA7 1347 aa18.38■□□□□ 0.53
PHF3-209ENST00000509330 PCDH11YQ9BZA8 1340 aa18.38■□□□□ 0.53
PHF3-209ENST00000509330 ADAMTS2O95450 1211 aa18.38■□□□□ 0.53
PHF3-209ENST00000509330 CHMP4AQ9BY43 222 aa18.38■□□□□ 0.53
PHF3-209ENST00000509330 RILPL2Q969X0 211 aa18.38■□□□□ 0.53
PHF3-209ENST00000509330 TRIM6-TRIM34B2RNG4 842 aa18.37■□□□□ 0.53
PHF3-209ENST00000509330 ATP5J2-PTCD1G3V325 749 aa18.37■□□□□ 0.53
PHF3-209ENST00000509330 HSP90AB1P08238 724 aaKnown RBP18.37■□□□□ 0.53
PHF3-209ENST00000509330 PXDNLA1KZ92 1463 aa18.37■□□□□ 0.53
PHF3-209ENST00000509330 DDX58O95786 925 aaKnown RBP18.37■□□□□ 0.53
PHF3-209ENST00000509330 CARD10Q9BWT7 1032 aa18.37■□□□□ 0.53
PHF3-209ENST00000509330 IBTKQ9P2D0 1353 aaPredicted RBP18.37■□□□□ 0.53
PHF3-209ENST00000509330 CACNA1FO60840 1977 aa18.37■□□□□ 0.53
PHF3-209ENST00000509330 PIP4K2BP78356 416 aa18.36■□□□□ 0.53
PHF3-209ENST00000509330 MX1P20591 662 aa18.36■□□□□ 0.53
PHF3-209ENST00000509330 SSH3Q8TE77 659 aa18.36■□□□□ 0.53
PHF3-209ENST00000509330 IGKV5-2P06315 115 aa18.36■□□□□ 0.53
PHF3-209ENST00000509330 SUCLG2Q96I99 432 aa18.36■□□□□ 0.53
PHF3-209ENST00000509330 SIPA1L3O60292 1781 aaPredicted RBP18.35■□□□□ 0.53
PHF3-209ENST00000509330 SCN11AQ9UI33 1791 aa18.35■□□□□ 0.53
PHF3-209ENST00000509330 KLHDC4Q8TBB5 520 aa18.35■□□□□ 0.53
PHF3-209ENST00000509330 SIL1Q9H173 461 aa18.35■□□□□ 0.53
PHF3-209ENST00000509330 C5P01031 1676 aa18.35■□□□□ 0.53
PHF3-209ENST00000509330 KAT6BQ8WYB5 2073 aa18.35■□□□□ 0.53
PHF3-209ENST00000509330 A1BGP04217 495 aa18.34■□□□□ 0.53
PHF3-209ENST00000509330 FOXD4L1Q9NU39 408 aa18.34■□□□□ 0.53
PHF3-209ENST00000509330 NUTM2BA6NNL0 878 aaPredicted RBP18.34■□□□□ 0.53
PHF3-209ENST00000509330 NUTM2EB1AL46 878 aaPredicted RBP18.34■□□□□ 0.53
PHF3-209ENST00000509330 NUTM2AQ8IVF1 878 aaPredicted RBP18.34■□□□□ 0.53
PHF3-209ENST00000509330 ARXQ96QS3 562 aa18.34■□□□□ 0.53
PHF3-209ENST00000509330 GRM8O00222 908 aa18.33■□□□□ 0.53
PHF3-209ENST00000509330 NFKBIBQ15653 356 aa18.33■□□□□ 0.53
PHF3-209ENST00000509330 UNC5CLQ8IV45 518 aa18.33■□□□□ 0.53
PHF3-209ENST00000509330 LINS1Q8NG48 757 aa18.33■□□□□ 0.53
PHF3-209ENST00000509330 RHPN1Q8TCX5 695 aa18.33■□□□□ 0.53
PHF3-209ENST00000509330 SYTL4Q96C24 671 aaPredicted RBP18.33■□□□□ 0.53
PHF3-209ENST00000509330 BICC1Q9H694 974 aaKnown RBP18.33■□□□□ 0.53
PHF3-209ENST00000509330 ANKRD13DQ6ZTN6 518 aa18.33■□□□□ 0.52
PHF3-209ENST00000509330 NEXNQ0ZGT2 675 aa18.33■□□□□ 0.52
PHF3-209ENST00000509330 POLA2Q14181 598 aa18.32■□□□□ 0.52
PHF3-209ENST00000509330 CD2BP2O95400 341 aaKnown RBP18.31■□□□□ 0.52
PHF3-209ENST00000509330 KAZALD1Q96I82 304 aa18.31■□□□□ 0.52
PHF3-209ENST00000509330 ADAMTS7Q9UKP4 1686 aa18.31■□□□□ 0.52
PHF3-209ENST00000509330 FRAT2O75474 233 aaPredicted RBP18.31■□□□□ 0.52
PHF3-209ENST00000509330 ALDH1L1O75891 902 aa18.31■□□□□ 0.52
PHF3-209ENST00000509330 RBM25P49756 843 aaKnown RBP18.31■□□□□ 0.52
PHF3-209ENST00000509330 HSCBQ8IWL3 235 aa18.31■□□□□ 0.52
PHF3-209ENST00000509330 NEURL1BA8MQ27 555 aa18.3■□□□□ 0.52
PHF3-209ENST00000509330 NBPF26B4DH59 902 aa18.3■□□□□ 0.52
PHF3-209ENST00000509330 NBPF14Q5TI25 921 aa18.3■□□□□ 0.52
PHF3-209ENST00000509330 NBPF10Q6P3W6 841 aaKnown RBP18.3■□□□□ 0.52
PHF3-209ENST00000509330 TTLL7Q6ZT98 887 aa18.3■□□□□ 0.52
PHF3-209ENST00000509330 NBPF15Q8N660 670 aa18.3■□□□□ 0.52
PHF3-209ENST00000509330 KIF2CQ99661 725 aa18.3■□□□□ 0.52
PHF3-209ENST00000509330 ZBTB3Q9H5J0 574 aa18.3■□□□□ 0.52
PHF3-209ENST00000509330 EPHA10Q5JZY3 1008 aa18.3■□□□□ 0.52
PHF3-209ENST00000509330 ASAP1Q9ULH1 1129 aa18.3■□□□□ 0.52
PHF3-209ENST00000509330 CASC1Q6TDU7 716 aa18.29■□□□□ 0.52
PHF3-209ENST00000509330 UBE3BQ7Z3V4 1068 aa18.29■□□□□ 0.52
PHF3-209ENST00000509330 LRP10Q7Z4F1 713 aa18.29■□□□□ 0.52
PHF3-209ENST00000509330 TMOD3Q9NYL9 352 aa18.29■□□□□ 0.52
PHF3-209ENST00000509330 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.29■□□□□ 0.52
PHF3-209ENST00000509330 SALL3Q9BXA9 1300 aa18.29■□□□□ 0.52
PHF3-209ENST00000509330 PKD1L3Q7Z443 1732 aa18.29■□□□□ 0.52
PHF3-209ENST00000509330 ABCA3Q99758 1704 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms