RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 POLRMTO00411 1230 aaKnown RBP15.53■□□□□ 0.08
HMGCS1-204ENST00000507293 KCNA3P22001 575 aa15.53■□□□□ 0.08
HMGCS1-204ENST00000507293 ARHGAP27Q6ZUM4 889 aa15.53■□□□□ 0.08
HMGCS1-204ENST00000507293 VSIG10Q8N0Z9 540 aa15.53■□□□□ 0.08
HMGCS1-204ENST00000507293 GAS2L2Q8NHY3 880 aa15.53■□□□□ 0.08
HMGCS1-204ENST00000507293 GNAT3A8MTJ3 354 aa15.52■□□□□ 0.08
HMGCS1-204ENST00000507293 TM4SF1P30408 202 aa15.52■□□□□ 0.08
HMGCS1-204ENST00000507293 TTC5Q8N0Z6 440 aa15.52■□□□□ 0.08
HMGCS1-204ENST00000507293 TEFQ10587 303 aa15.51■□□□□ 0.07
HMGCS1-204ENST00000507293 IL17REQ8NFR9 667 aa15.51■□□□□ 0.07
HMGCS1-204ENST00000507293 CFAP53Q96M91 514 aa15.51■□□□□ 0.07
HMGCS1-204ENST00000507293 PIM2Q9P1W9 311 aa15.51■□□□□ 0.07
HMGCS1-204ENST00000507293 NARFQ9UHQ1 456 aa15.51■□□□□ 0.07
HMGCS1-204ENST00000507293 SBF1O95248 1867 aa15.5■□□□□ 0.07
HMGCS1-204ENST00000507293 CANXP27824 592 aaKnown RBP15.5■□□□□ 0.07
HMGCS1-204ENST00000507293 CHRNA5P30532 468 aa15.5■□□□□ 0.07
HMGCS1-204ENST00000507293 PRKAR2BP31323 418 aa15.5■□□□□ 0.07
HMGCS1-204ENST00000507293 NFIXQ14938 502 aa15.5■□□□□ 0.07
HMGCS1-204ENST00000507293 HEG1Q9ULI3 1381 aa15.49■□□□□ 0.07
HMGCS1-204ENST00000507293 ZNF496Q96IT1 587 aaPredicted RBP15.49■□□□□ 0.07
HMGCS1-204ENST00000507293 RSPH6AQ9H0K4 717 aa15.49■□□□□ 0.07
HMGCS1-204ENST00000507293 BCL2L12Q9HB09 334 aa15.49■□□□□ 0.07
HMGCS1-204ENST00000507293 BCORQ6W2J9 1755 aa15.49■□□□□ 0.07
HMGCS1-204ENST00000507293 CEMIPQ8WUJ3 1361 aa15.49■□□□□ 0.07
HMGCS1-204ENST00000507293 ANKRD31Q8N7Z5 1873 aa15.48■□□□□ 0.07
HMGCS1-204ENST00000507293 KIF3CO14782 793 aa15.48■□□□□ 0.07
HMGCS1-204ENST00000507293 STARD3NLO95772 234 aa15.48■□□□□ 0.07
HMGCS1-204ENST00000507293 DALRD3Q5D0E6 543 aaKnown RBP15.48■□□□□ 0.07
HMGCS1-204ENST00000507293 ZNF790Q6PG37 636 aa15.48■□□□□ 0.07
HMGCS1-204ENST00000507293 PHACTR3Q96KR7 559 aa15.48■□□□□ 0.07
HMGCS1-204ENST00000507293 PPP2R1AP30153 589 aa15.47■□□□□ 0.07
HMGCS1-204ENST00000507293 EIF5P55010 431 aaKnown RBP15.47■□□□□ 0.07
HMGCS1-204ENST00000507293 NUDCQ9Y266 331 aa15.46■□□□□ 0.07
HMGCS1-204ENST00000507293 CARMIL3Q8ND23 1372 aa15.46■□□□□ 0.07
HMGCS1-204ENST00000507293 COL11A2P13942 1736 aaPredicted RBP15.46■□□□□ 0.06
HMGCS1-204ENST00000507293 DLG5Q8TDM6 1919 aa15.45■□□□□ 0.06
HMGCS1-204ENST00000507293 A0A087WZG4 1122 aa15.45■□□□□ 0.06
HMGCS1-204ENST00000507293 SERPINB2P05120 415 aa15.45■□□□□ 0.06
HMGCS1-204ENST00000507293 U2AF1L5P0DN76 240 aaPredicted RBP15.45■□□□□ 0.06
HMGCS1-204ENST00000507293 U2AF1Q01081 240 aaKnown RBP eCLIP15.45■□□□□ 0.06
HMGCS1-204ENST00000507293 C9orf131Q5VYM1 1079 aa15.45■□□□□ 0.06
HMGCS1-204ENST00000507293 FMNL2Q96PY5 1086 aa15.45■□□□□ 0.06
HMGCS1-204ENST00000507293 CCDC88AQ3V6T2 1871 aa15.45■□□□□ 0.06
HMGCS1-204ENST00000507293 KCNQ3O43525 872 aa15.44■□□□□ 0.06
HMGCS1-204ENST00000507293 HSPA6P17066 643 aa15.44■□□□□ 0.06
HMGCS1-204ENST00000507293 BICDL1Q6ZP65 573 aa15.44■□□□□ 0.06
HMGCS1-204ENST00000507293 TEX13AQ9BXU3 409 aaPredicted RBP15.44■□□□□ 0.06
HMGCS1-204ENST00000507293 ZNF330Q9Y3S2 320 aaPredicted RBP15.44■□□□□ 0.06
HMGCS1-204ENST00000507293 TNRC6CQ9HCJ0 1690 aaKnown RBP15.44■□□□□ 0.06
HMGCS1-204ENST00000507293 CACNA1SQ13698 1873 aa15.44■□□□□ 0.06
HMGCS1-204ENST00000507293 TIAM2Q8IVF5 1701 aa15.43■□□□□ 0.06
HMGCS1-204ENST00000507293 BTBD11A6QL63 1104 aa15.43■□□□□ 0.06
HMGCS1-204ENST00000507293 NMRK2Q9NPI5 230 aa15.43■□□□□ 0.06
HMGCS1-204ENST00000507293 RNF181Q9P0P0 153 aa15.43■□□□□ 0.06
HMGCS1-204ENST00000507293 LAMB4A4D0S4 1761 aa15.42■□□□□ 0.06
HMGCS1-204ENST00000507293 A1BGP04217 495 aa15.42■□□□□ 0.06
HMGCS1-204ENST00000507293 IL6STP40189 918 aaPredicted RBP15.42■□□□□ 0.06
HMGCS1-204ENST00000507293 TBC1D9BQ66K14 1250 aa15.42■□□□□ 0.06
HMGCS1-204ENST00000507293 TBC1D2BQ9UPU7 963 aa15.42■□□□□ 0.06
HMGCS1-204ENST00000507293 MCM10Q7L590 875 aa15.41■□□□□ 0.06
HMGCS1-204ENST00000507293 C2CD5Q86YS7 1000 aa15.41■□□□□ 0.06
HMGCS1-204ENST00000507293 RTF1Q92541 710 aaKnown RBP15.41■□□□□ 0.06
HMGCS1-204ENST00000507293 KDM3BQ7LBC6 1761 aa15.4■□□□□ 0.06
HMGCS1-204ENST00000507293 ARFGEF2Q9Y6D5 1785 aa15.4■□□□□ 0.06
HMGCS1-204ENST00000507293 RASSF7Q02833 373 aa15.4■□□□□ 0.06
HMGCS1-204ENST00000507293 PRAMEF22A3QJZ6 481 aa15.39■□□□□ 0.05
HMGCS1-204ENST00000507293 TOMM70O94826 608 aa15.39■□□□□ 0.05
HMGCS1-204ENST00000507293 DCTN1Q14203 1278 aa15.39■□□□□ 0.05
HMGCS1-204ENST00000507293 NPM2Q86SE8 214 aaKnown RBP15.39■□□□□ 0.05
HMGCS1-204ENST00000507293 H0YIN7 160 aa15.38■□□□□ 0.05
HMGCS1-204ENST00000507293 CAMTA2O94983 1202 aa15.38■□□□□ 0.05
HMGCS1-204ENST00000507293 PIP4K2AP48426 406 aaPredicted RBP15.38■□□□□ 0.05
HMGCS1-204ENST00000507293 CCDC24Q8N4L8 307 aa15.38■□□□□ 0.05
HMGCS1-204ENST00000507293 TTLL6Q8N841 843 aa15.38■□□□□ 0.05
HMGCS1-204ENST00000507293 USP16Q9Y5T5 823 aa15.38■□□□□ 0.05
HMGCS1-204ENST00000507293 KDM2BQ8NHM5 1336 aa15.38■□□□□ 0.05
HMGCS1-204ENST00000507293 FER1L6Q2WGJ9 1857 aa15.37■□□□□ 0.05
HMGCS1-204ENST00000507293 WDR90Q96KV7 1748 aa15.37■□□□□ 0.05
HMGCS1-204ENST00000507293 DICER1Q9UPY3 1922 aaKnown RBP15.37■□□□□ 0.05
HMGCS1-204ENST00000507293 PRR5LQ6MZQ0 368 aa15.37■□□□□ 0.05
HMGCS1-204ENST00000507293 DZIP3Q86Y13 1208 aaKnown RBP15.37■□□□□ 0.05
HMGCS1-204ENST00000507293 HTATSF1O43719 755 aaKnown RBP15.36■□□□□ 0.05
HMGCS1-204ENST00000507293 SNRPA1P09661 255 aaKnown RBP15.36■□□□□ 0.05
HMGCS1-204ENST00000507293 BRIP1Q9BX63 1249 aa15.36■□□□□ 0.05
HMGCS1-204ENST00000507293 PDE6BP35913 854 aa15.35■□□□□ 0.05
HMGCS1-204ENST00000507293 PRELPP51888 382 aa15.35■□□□□ 0.05
HMGCS1-204ENST00000507293 C16orf71Q8IYS4 520 aaPredicted RBP15.35■□□□□ 0.05
HMGCS1-204ENST00000507293 CNBD1Q8NA66 436 aa15.35■□□□□ 0.05
HMGCS1-204ENST00000507293 ZNF622Q969S3 477 aaKnown RBP eCLIP15.35■□□□□ 0.05
HMGCS1-204ENST00000507293 SETDB2Q96T68 719 aa15.35■□□□□ 0.05
HMGCS1-204ENST00000507293 SLX4Q8IY92 1834 aa15.35■□□□□ 0.05
HMGCS1-204ENST00000507293 ZC3H4Q9UPT8 1303 aaKnown RBP15.35■□□□□ 0.05
HMGCS1-204ENST00000507293 NPHP1O15259 732 aa15.34■□□□□ 0.05
HMGCS1-204ENST00000507293 LMNB1P20700 586 aa15.34■□□□□ 0.05
HMGCS1-204ENST00000507293 APLP1P51693 650 aa15.34■□□□□ 0.05
HMGCS1-204ENST00000507293 RBM46Q8TBY0 533 aaKnown RBP15.34■□□□□ 0.05
HMGCS1-204ENST00000507293 PDZRN3Q9UPQ7 1066 aa15.34■□□□□ 0.05
HMGCS1-204ENST00000507293 NFKBIEO00221 500 aa15.33■□□□□ 0.04
HMGCS1-204ENST00000507293 NEFMP07197 916 aa15.33■□□□□ 0.04
HMGCS1-204ENST00000507293 ST5P78524 1137 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms