RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 SRP68Q9UHB9 627 aaKnown RBP19.23■□□□□ 0.67
HMGCS1-203ENST00000507004 HEG1Q9ULI3 1381 aa19.22■□□□□ 0.67
HMGCS1-203ENST00000507004 UBR2Q8IWV8 1755 aa19.22■□□□□ 0.67
HMGCS1-203ENST00000507004 TM4SF1P30408 202 aa19.22■□□□□ 0.67
HMGCS1-203ENST00000507004 ZBTB1Q9Y2K1 713 aa19.22■□□□□ 0.67
HMGCS1-203ENST00000507004 USPL1Q5W0Q7 1092 aa19.21■□□□□ 0.67
HMGCS1-203ENST00000507004 PNNQ9H307 717 aaKnown RBP19.21■□□□□ 0.67
HMGCS1-203ENST00000507004 ATP10DQ9P241 1426 aa19.2■□□□□ 0.66
HMGCS1-203ENST00000507004 BTBD11A6QL63 1104 aa19.2■□□□□ 0.66
HMGCS1-203ENST00000507004 ZNF496Q96IT1 587 aaPredicted RBP19.2■□□□□ 0.66
HMGCS1-203ENST00000507004 PHACTR3Q96KR7 559 aa19.2■□□□□ 0.66
HMGCS1-203ENST00000507004 PIM2Q9P1W9 311 aa19.2■□□□□ 0.66
HMGCS1-203ENST00000507004 BCS1LQ9Y276 419 aa19.2■□□□□ 0.66
HMGCS1-203ENST00000507004 ADCY9O60503 1353 aa19.19■□□□□ 0.66
HMGCS1-203ENST00000507004 A0A0G2JLW4 131 aa19.19■□□□□ 0.66
HMGCS1-203ENST00000507004 POLRMTO00411 1230 aaKnown RBP19.19■□□□□ 0.66
HMGCS1-203ENST00000507004 DPEP1P16444 411 aa19.19■□□□□ 0.66
HMGCS1-203ENST00000507004 IL6STP40189 918 aaPredicted RBP19.19■□□□□ 0.66
HMGCS1-203ENST00000507004 EIF5P55010 431 aaKnown RBP19.19■□□□□ 0.66
HMGCS1-203ENST00000507004 DDR1Q08345 913 aa19.19■□□□□ 0.66
HMGCS1-203ENST00000507004 GPBP1L1Q9HC44 474 aaPredicted RBP19.19■□□□□ 0.66
HMGCS1-203ENST00000507004 CANXP27824 592 aaKnown RBP19.18■□□□□ 0.66
HMGCS1-203ENST00000507004 SIPA1L3O60292 1781 aaPredicted RBP19.17■□□□□ 0.66
HMGCS1-203ENST00000507004 PDZRN3Q9UPQ7 1066 aa19.17■□□□□ 0.66
HMGCS1-203ENST00000507004 KIAA1551Q9HCM1 1747 aa19.17■□□□□ 0.66
HMGCS1-203ENST00000507004 NFIXQ14938 502 aa19.16■□□□□ 0.66
HMGCS1-203ENST00000507004 DALRD3Q5D0E6 543 aaKnown RBP19.16■□□□□ 0.66
HMGCS1-203ENST00000507004 WWC3Q9ULE0 1092 aa19.15■□□□□ 0.66
HMGCS1-203ENST00000507004 N4BP2Q86UW6 1770 aaPredicted RBP19.14■□□□□ 0.66
HMGCS1-203ENST00000507004 SNRPA1P09661 255 aaKnown RBP19.14■□□□□ 0.65
HMGCS1-203ENST00000507004 RALBP1Q15311 655 aa19.14■□□□□ 0.65
HMGCS1-203ENST00000507004 ARHGAP27Q6ZUM4 889 aa19.14■□□□□ 0.65
HMGCS1-203ENST00000507004 PNISRQ8TF01 805 aaKnown RBP19.14■□□□□ 0.65
HMGCS1-203ENST00000507004 SERPINB2P05120 415 aa19.13■□□□□ 0.65
HMGCS1-203ENST00000507004 KCNA3P22001 575 aa19.13■□□□□ 0.65
HMGCS1-203ENST00000507004 BCL2L12Q9HB09 334 aa19.13■□□□□ 0.65
HMGCS1-203ENST00000507004 BRCA1P38398 1863 aaKnown RBP19.12■□□□□ 0.65
HMGCS1-203ENST00000507004 RGL2O15211 777 aa19.12■□□□□ 0.65
HMGCS1-203ENST00000507004 TAF7Q15545 349 aaPredicted RBP19.12■□□□□ 0.65
HMGCS1-203ENST00000507004 ARFGEF1Q9Y6D6 1849 aa19.11■□□□□ 0.65
HMGCS1-203ENST00000507004 GOLGB1Q14789 3259 aaKnown RBP19.11■□□□□ 0.65
HMGCS1-203ENST00000507004 SENP3-EIF4A1A0A087X0R7 540 aa19.11■□□□□ 0.65
HMGCS1-203ENST00000507004 MAPK8IP3Q9UPT6 1336 aa19.1■□□□□ 0.65
HMGCS1-203ENST00000507004 MCM10Q7L590 875 aa19.1■□□□□ 0.65
HMGCS1-203ENST00000507004 NRXN2Q9P2S2 1712 aa19.1■□□□□ 0.65
HMGCS1-203ENST00000507004 CARMIL3Q8ND23 1372 aa19.09■□□□□ 0.65
HMGCS1-203ENST00000507004 CLEC4GQ6UXB4 293 aa19.09■□□□□ 0.65
HMGCS1-203ENST00000507004 ZNF652Q9Y2D9 606 aa19.09■□□□□ 0.65
HMGCS1-203ENST00000507004 ZNF330Q9Y3S2 320 aaPredicted RBP19.09■□□□□ 0.65
HMGCS1-203ENST00000507004 H0YIN7 160 aa19.08■□□□□ 0.64
HMGCS1-203ENST00000507004 A1BGP04217 495 aa19.08■□□□□ 0.64
HMGCS1-203ENST00000507004 KCNQ3O43525 872 aa19.07■□□□□ 0.64
HMGCS1-203ENST00000507004 CHRNA5P30532 468 aa19.07■□□□□ 0.64
HMGCS1-203ENST00000507004 PDE6BP35913 854 aa19.07■□□□□ 0.64
HMGCS1-203ENST00000507004 NFE2L2Q16236 605 aa19.07■□□□□ 0.64
HMGCS1-203ENST00000507004 DZIP3Q86Y13 1208 aaKnown RBP19.07■□□□□ 0.64
HMGCS1-203ENST00000507004 TTLL6Q8N841 843 aa19.07■□□□□ 0.64
HMGCS1-203ENST00000507004 SETDB2Q96T68 719 aa19.07■□□□□ 0.64
HMGCS1-203ENST00000507004 BRIP1Q9BX63 1249 aa19.07■□□□□ 0.64
HMGCS1-203ENST00000507004 TBC1D2BQ9UPU7 963 aa19.07■□□□□ 0.64
HMGCS1-203ENST00000507004 USP16Q9Y5T5 823 aa19.07■□□□□ 0.64
HMGCS1-203ENST00000507004 AFDNP55196 1824 aaKnown RBP19.07■□□□□ 0.64
HMGCS1-203ENST00000507004 ZC3H4Q9UPT8 1303 aaKnown RBP19.06■□□□□ 0.64
HMGCS1-203ENST00000507004 SCN7AQ01118 1682 aa19.06■□□□□ 0.64
HMGCS1-203ENST00000507004 BICDL1Q6ZP65 573 aa19.06■□□□□ 0.64
HMGCS1-203ENST00000507004 PLEKHF1Q96S99 279 aa19.06■□□□□ 0.64
HMGCS1-203ENST00000507004 CAMTA2O94983 1202 aa19.05■□□□□ 0.64
HMGCS1-203ENST00000507004 TBC1D9BQ66K14 1250 aa19.05■□□□□ 0.64
HMGCS1-203ENST00000507004 C2CD5Q86YS7 1000 aa19.05■□□□□ 0.64
HMGCS1-203ENST00000507004 ZNF526Q8TF50 670 aaPredicted RBP19.05■□□□□ 0.64
HMGCS1-203ENST00000507004 NPHP1O15259 732 aa19.04■□□□□ 0.64
HMGCS1-203ENST00000507004 ST5P78524 1137 aa19.04■□□□□ 0.64
HMGCS1-203ENST00000507004 DCTN1Q14203 1278 aa19.04■□□□□ 0.64
HMGCS1-203ENST00000507004 C9orf131Q5VYM1 1079 aa19.04■□□□□ 0.64
HMGCS1-203ENST00000507004 LMOD3Q0VAK6 560 aa19.03■□□□□ 0.64
HMGCS1-203ENST00000507004 CNBD1Q8NA66 436 aa19.03■□□□□ 0.64
HMGCS1-203ENST00000507004 KDM2BQ8NHM5 1336 aa19.02■□□□□ 0.64
HMGCS1-203ENST00000507004 PRR5LQ6MZQ0 368 aa19.02■□□□□ 0.64
HMGCS1-203ENST00000507004 BABAM1Q9NWV8 329 aa19.02■□□□□ 0.64
HMGCS1-203ENST00000507004 MYBBP1AQ9BQG0 1328 aaKnown RBP19.01■□□□□ 0.63
HMGCS1-203ENST00000507004 DLEC1Q9Y238 1755 aa19.01■□□□□ 0.63
HMGCS1-203ENST00000507004 KIF3CO14782 793 aa19.01■□□□□ 0.63
HMGCS1-203ENST00000507004 RNF181Q9P0P0 153 aa19.01■□□□□ 0.63
HMGCS1-203ENST00000507004 TOMM70O94826 608 aa19■□□□□ 0.63
HMGCS1-203ENST00000507004 CNKSR1Q969H4 720 aa19■□□□□ 0.63
HMGCS1-203ENST00000507004 ERBB4Q15303 1308 aa19■□□□□ 0.63
HMGCS1-203ENST00000507004 LMNB1P20700 586 aa18.99■□□□□ 0.63
HMGCS1-203ENST00000507004 SOGA3Q5TF21 947 aa18.99■□□□□ 0.63
HMGCS1-203ENST00000507004 BCORQ6W2J9 1755 aa18.98■□□□□ 0.63
HMGCS1-203ENST00000507004 HSPA6P17066 643 aa18.98■□□□□ 0.63
HMGCS1-203ENST00000507004 EIF4A1P60842 406 aaKnown RBP18.98■□□□□ 0.63
HMGCS1-203ENST00000507004 DDX10Q13206 875 aaKnown RBP18.98■□□□□ 0.63
HMGCS1-203ENST00000507004 STYK1Q6J9G0 422 aa18.98■□□□□ 0.63
HMGCS1-203ENST00000507004 TPTE2Q6XPS3 522 aa18.98■□□□□ 0.63
HMGCS1-203ENST00000507004 NBPF5PQ86XG9 351 aaPredicted RBP18.98■□□□□ 0.63
HMGCS1-203ENST00000507004 ZNF622Q969S3 477 aaKnown RBP eCLIP18.98■□□□□ 0.63
HMGCS1-203ENST00000507004 DLG5Q8TDM6 1919 aa18.98■□□□□ 0.63
HMGCS1-203ENST00000507004 PRAMEF22A3QJZ6 481 aa18.97■□□□□ 0.63
HMGCS1-203ENST00000507004 NBPF26B4DH59 902 aa18.97■□□□□ 0.63
HMGCS1-203ENST00000507004 NBPF10Q6P3W6 841 aaKnown RBP18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms