RNA–Protein interactions for RNA: ENST00000506632.2

PDLIM5-209, Transcript of PDZ and LIM domain 5, humanhuman

TSL 3

Gene PDLIM5, Length 907 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-209ENST00000506632 PXDNLA1KZ92 1463 aa12.1□□□□□ -0.47
PDLIM5-209ENST00000506632 HTATSF1O43719 755 aaKnown RBP12.1□□□□□ -0.47
PDLIM5-209ENST00000506632 RALBP1Q15311 655 aa12.1□□□□□ -0.47
PDLIM5-209ENST00000506632 COL15A1P39059 1388 aa12.09□□□□□ -0.47
PDLIM5-209ENST00000506632 GRIN3BO60391 1043 aa12.09□□□□□ -0.47
PDLIM5-209ENST00000506632 DDX10Q13206 875 aaKnown RBP12.09□□□□□ -0.47
PDLIM5-209ENST00000506632 PELP1Q8IZL8 1130 aaKnown RBP12.09□□□□□ -0.47
PDLIM5-209ENST00000506632 PLEKHF1Q96S99 279 aa12.09□□□□□ -0.47
PDLIM5-209ENST00000506632 KCNQ3O43525 872 aa12.08□□□□□ -0.48
PDLIM5-209ENST00000506632 DDR1Q08345 913 aa12.08□□□□□ -0.48
PDLIM5-209ENST00000506632 MCM10Q7L590 875 aa12.08□□□□□ -0.48
PDLIM5-209ENST00000506632 ZNF784Q8NCA9 323 aaPredicted RBP12.08□□□□□ -0.48
PDLIM5-209ENST00000506632 FMNL2Q96PY5 1086 aa12.08□□□□□ -0.48
PDLIM5-209ENST00000506632 TEX13AQ9BXU3 409 aaPredicted RBP12.08□□□□□ -0.48
PDLIM5-209ENST00000506632 NARFQ9UHQ1 456 aa12.08□□□□□ -0.48
PDLIM5-209ENST00000506632 PARP3Q9Y6F1 533 aa12.08□□□□□ -0.48
PDLIM5-209ENST00000506632 DLG5Q8TDM6 1919 aa12.07□□□□□ -0.48
PDLIM5-209ENST00000506632 BTBD11A6QL63 1104 aa12.07□□□□□ -0.48
PDLIM5-209ENST00000506632 STARD3NLO95772 234 aa12.07□□□□□ -0.48
PDLIM5-209ENST00000506632 TM4SF1P30408 202 aa12.07□□□□□ -0.48
PDLIM5-209ENST00000506632 EIF5P55010 431 aaKnown RBP12.07□□□□□ -0.48
PDLIM5-209ENST00000506632 TGFB2P61812 414 aa12.07□□□□□ -0.48
PDLIM5-209ENST00000506632 USPL1Q5W0Q7 1092 aa12.07□□□□□ -0.48
PDLIM5-209ENST00000506632 RTF1Q92541 710 aaKnown RBP12.07□□□□□ -0.48
PDLIM5-209ENST00000506632 BCL2L12Q9HB09 334 aa12.07□□□□□ -0.48
PDLIM5-209ENST00000506632 NRXN2Q9P2S2 1712 aa12.06□□□□□ -0.48
PDLIM5-209ENST00000506632 N4BP2Q86UW6 1770 aaPredicted RBP12.06□□□□□ -0.48
PDLIM5-209ENST00000506632 POLRMTO00411 1230 aaKnown RBP12.06□□□□□ -0.48
PDLIM5-209ENST00000506632 ZPR1O75312 459 aa12.06□□□□□ -0.48
PDLIM5-209ENST00000506632 DCTN1Q14203 1278 aa12.06□□□□□ -0.48
PDLIM5-209ENST00000506632 BRCA1P38398 1863 aaKnown RBP12.06□□□□□ -0.48
PDLIM5-209ENST00000506632 ATXN8OSP0DMR3 200 aa12.05□□□□□ -0.48
PDLIM5-209ENST00000506632 CANXP27824 592 aaKnown RBP12.05□□□□□ -0.48
PDLIM5-209ENST00000506632 SCN7AQ01118 1682 aa12.05□□□□□ -0.48
PDLIM5-209ENST00000506632 MYBBP1AQ9BQG0 1328 aaKnown RBP12.05□□□□□ -0.48
PDLIM5-209ENST00000506632 SLC4A2P04920 1241 aa12.04□□□□□ -0.48
PDLIM5-209ENST00000506632 IL6STP40189 918 aaPredicted RBP12.04□□□□□ -0.48
PDLIM5-209ENST00000506632 NFIXQ14938 502 aa12.04□□□□□ -0.48
PDLIM5-209ENST00000506632 TAF7Q15545 349 aaPredicted RBP12.04□□□□□ -0.48
PDLIM5-209ENST00000506632 NFE2L2Q16236 605 aa12.04□□□□□ -0.48
PDLIM5-209ENST00000506632 USP16Q9Y5T5 823 aa12.04□□□□□ -0.48
PDLIM5-209ENST00000506632 KDM3BQ7LBC6 1761 aa12.04□□□□□ -0.48
PDLIM5-209ENST00000506632 GOLGB1Q14789 3259 aaKnown RBP12.04□□□□□ -0.48
PDLIM5-209ENST00000506632 AFDNP55196 1824 aaKnown RBP12.04□□□□□ -0.48
PDLIM5-209ENST00000506632 A0A087WZG4 1122 aa12.03□□□□□ -0.48
PDLIM5-209ENST00000506632 A0A0G2JLW4 131 aa12.03□□□□□ -0.48
PDLIM5-209ENST00000506632 A1BGP04217 495 aa12.03□□□□□ -0.48
PDLIM5-209ENST00000506632 NEFMP07197 916 aa12.03□□□□□ -0.48
PDLIM5-209ENST00000506632 DPEP1P16444 411 aa12.03□□□□□ -0.48
PDLIM5-209ENST00000506632 KCNA3P22001 575 aa12.03□□□□□ -0.48
PDLIM5-209ENST00000506632 PNNQ9H307 717 aaKnown RBP12.03□□□□□ -0.48
PDLIM5-209ENST00000506632 WWC3Q9ULE0 1092 aa12.03□□□□□ -0.48
PDLIM5-209ENST00000506632 ADCY9O60503 1353 aa12.03□□□□□ -0.48
PDLIM5-209ENST00000506632 PRAMEF22A3QJZ6 481 aa12.02□□□□□ -0.49
PDLIM5-209ENST00000506632 SNRPA1P09661 255 aaKnown RBP12.02□□□□□ -0.49
PDLIM5-209ENST00000506632 BCORQ6W2J9 1755 aa12.02□□□□□ -0.49
PDLIM5-209ENST00000506632 LAMB4A4D0S4 1761 aa12.01□□□□□ -0.49
PDLIM5-209ENST00000506632 ARFGEF1Q9Y6D6 1849 aa12.01□□□□□ -0.49
PDLIM5-209ENST00000506632 MAPK8IP3Q9UPT6 1336 aa12.01□□□□□ -0.49
PDLIM5-209ENST00000506632 CAMTA2O94983 1202 aa12□□□□□ -0.49
PDLIM5-209ENST00000506632 PNISRQ8TF01 805 aaKnown RBP12□□□□□ -0.49
PDLIM5-209ENST00000506632 THUMPD2Q9BTF0 503 aaKnown RBP12□□□□□ -0.49
PDLIM5-209ENST00000506632 PRKRIP1Q9H875 184 aaPredicted RBP12□□□□□ -0.49
PDLIM5-209ENST00000506632 NBPF26B4DH59 902 aa11.99□□□□□ -0.49
PDLIM5-209ENST00000506632 SERPINB2P05120 415 aa11.99□□□□□ -0.49
PDLIM5-209ENST00000506632 TBC1D9BQ66K14 1250 aa11.99□□□□□ -0.49
PDLIM5-209ENST00000506632 NBPF10Q6P3W6 841 aaKnown RBP11.99□□□□□ -0.49
PDLIM5-209ENST00000506632 NBPF15Q8N660 670 aa11.99□□□□□ -0.49
PDLIM5-209ENST00000506632 MIS18AQ9NYP9 233 aa11.99□□□□□ -0.49
PDLIM5-209ENST00000506632 TBC1D2BQ9UPU7 963 aa11.99□□□□□ -0.49
PDLIM5-209ENST00000506632 BCS1LQ9Y276 419 aa11.99□□□□□ -0.49
PDLIM5-209ENST00000506632 DLEC1Q9Y238 1755 aa11.99□□□□□ -0.49
PDLIM5-209ENST00000506632 ATP10DQ9P241 1426 aa11.98□□□□□ -0.49
PDLIM5-209ENST00000506632 CARMIL3Q8ND23 1372 aa11.98□□□□□ -0.49
PDLIM5-209ENST00000506632 RGL2O15211 777 aa11.98□□□□□ -0.49
PDLIM5-209ENST00000506632 GIGYF1O75420 1035 aaPredicted RBP11.98□□□□□ -0.49
PDLIM5-209ENST00000506632 CHRNA5P30532 468 aa11.98□□□□□ -0.49
PDLIM5-209ENST00000506632 ZEB1P37275 1124 aaPredicted RBP11.98□□□□□ -0.49
PDLIM5-209ENST00000506632 TMPOP42166 694 aaKnown RBP11.98□□□□□ -0.49
PDLIM5-209ENST00000506632 PIP4K2AP48426 406 aaPredicted RBP11.98□□□□□ -0.49
PDLIM5-209ENST00000506632 EIF4A1P60842 406 aaKnown RBP11.98□□□□□ -0.49
PDLIM5-209ENST00000506632 DZIP3Q86Y13 1208 aaKnown RBP11.98□□□□□ -0.49
PDLIM5-209ENST00000506632 PIM2Q9P1W9 311 aa11.98□□□□□ -0.49
PDLIM5-209ENST00000506632 ZNF330Q9Y3S2 320 aaPredicted RBP11.98□□□□□ -0.49
PDLIM5-209ENST00000506632 ANKRD31Q8N7Z5 1873 aa11.97□□□□□ -0.49
PDLIM5-209ENST00000506632 RIPK4P57078 832 aa11.97□□□□□ -0.49
PDLIM5-209ENST00000506632 BICDL1Q6ZP65 573 aa11.97□□□□□ -0.49
PDLIM5-209ENST00000506632 PRR5LQ6MZQ0 368 aa11.96□□□□□ -0.49
PDLIM5-209ENST00000506632 CLEC4GQ6UXB4 293 aa11.96□□□□□ -0.49
PDLIM5-209ENST00000506632 NPM2Q86SE8 214 aaKnown RBP11.96□□□□□ -0.49
PDLIM5-209ENST00000506632 MYCNP04198 464 aaPredicted RBP11.95□□□□□ -0.5
PDLIM5-209ENST00000506632 HOXD11P31277 338 aaPredicted RBP11.95□□□□□ -0.5
PDLIM5-209ENST00000506632 LMOD3Q0VAK6 560 aa11.95□□□□□ -0.5
PDLIM5-209ENST00000506632 DALRD3Q5D0E6 543 aaKnown RBP11.95□□□□□ -0.5
PDLIM5-209ENST00000506632 RUNDC1Q96C34 613 aa11.95□□□□□ -0.5
PDLIM5-209ENST00000506632 BABAM1Q9NWV8 329 aa11.95□□□□□ -0.5
PDLIM5-209ENST00000506632 ADAMTS8Q9UP79 889 aa11.95□□□□□ -0.5
PDLIM5-209ENST00000506632 WDR43Q15061 677 aaKnown RBP eCLIP11.94□□□□□ -0.5
PDLIM5-209ENST00000506632 CCDC146Q8IYE0 955 aa11.94□□□□□ -0.5
PDLIM5-209ENST00000506632 SETDB2Q96T68 719 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms