RNA–Protein interactions for RNA: ENST00000505307.5

UBE2D3-220, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 5

Gene UBE2D3, Length 743 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-220ENST00000505307 COL15A1P39059 1388 aa26.72■■□□□ 1.87
UBE2D3-220ENST00000505307 PPP2R1AP30153 589 aa26.72■■□□□ 1.87
UBE2D3-220ENST00000505307 PRKAR2BP31323 418 aa26.72■■□□□ 1.87
UBE2D3-220ENST00000505307 USPL1Q5W0Q7 1092 aa26.72■■□□□ 1.87
UBE2D3-220ENST00000505307 ZNF790Q6PG37 636 aa26.72■■□□□ 1.87
UBE2D3-220ENST00000505307 POLRMTO00411 1230 aaKnown RBP26.71■■□□□ 1.87
UBE2D3-220ENST00000505307 N4BP2Q86UW6 1770 aaPredicted RBP26.71■■□□□ 1.87
UBE2D3-220ENST00000505307 UBR2Q8IWV8 1755 aa26.71■■□□□ 1.87
UBE2D3-220ENST00000505307 FCHSD2O94868 740 aa26.7■■□□□ 1.86
UBE2D3-220ENST00000505307 ZNF526Q8TF50 670 aaPredicted RBP26.7■■□□□ 1.86
UBE2D3-220ENST00000505307 PIM2Q9P1W9 311 aa26.7■■□□□ 1.86
UBE2D3-220ENST00000505307 CEMIPQ8WUJ3 1361 aa26.7■■□□□ 1.86
UBE2D3-220ENST00000505307 A0A087WZG4 1122 aa26.69■■□□□ 1.86
UBE2D3-220ENST00000505307 U2AF1L5P0DN76 240 aaPredicted RBP26.69■■□□□ 1.86
UBE2D3-220ENST00000505307 KCNA3P22001 575 aa26.69■■□□□ 1.86
UBE2D3-220ENST00000505307 U2AF1Q01081 240 aaKnown RBP eCLIP26.69■■□□□ 1.862e-12■□□□□ 11.1
UBE2D3-220ENST00000505307 ZNF496Q96IT1 587 aaPredicted RBP26.69■■□□□ 1.86
UBE2D3-220ENST00000505307 PHACTR3Q96KR7 559 aa26.69■■□□□ 1.86
UBE2D3-220ENST00000505307 HEG1Q9ULI3 1381 aa26.69■■□□□ 1.86
UBE2D3-220ENST00000505307 CANXP27824 592 aaKnown RBP26.67■■□□□ 1.86
UBE2D3-220ENST00000505307 ARHGAP27Q6ZUM4 889 aa26.67■■□□□ 1.86
UBE2D3-220ENST00000505307 FMNL2Q96PY5 1086 aa26.67■■□□□ 1.86
UBE2D3-220ENST00000505307 EIF5P55010 431 aaKnown RBP26.66■■□□□ 1.86
UBE2D3-220ENST00000505307 NFIXQ14938 502 aa26.66■■□□□ 1.86
UBE2D3-220ENST00000505307 DALRD3Q5D0E6 543 aaKnown RBP26.66■■□□□ 1.86
UBE2D3-220ENST00000505307 BTBD11A6QL63 1104 aa26.64■■□□□ 1.86
UBE2D3-220ENST00000505307 RTF1Q92541 710 aaKnown RBP26.64■■□□□ 1.86
UBE2D3-220ENST00000505307 BRCA1P38398 1863 aaKnown RBP26.64■■□□□ 1.85
UBE2D3-220ENST00000505307 BCL2L12Q9HB09 334 aa26.63■■□□□ 1.85
UBE2D3-220ENST00000505307 SIPA1L3O60292 1781 aaPredicted RBP26.63■■□□□ 1.85
UBE2D3-220ENST00000505307 HTATSF1O43719 755 aaKnown RBP26.62■■□□□ 1.85
UBE2D3-220ENST00000505307 SERPINB2P05120 415 aa26.61■■□□□ 1.85
UBE2D3-220ENST00000505307 IL6STP40189 918 aaPredicted RBP26.61■■□□□ 1.85
UBE2D3-220ENST00000505307 NPM2Q86SE8 214 aaKnown RBP26.61■■□□□ 1.85
UBE2D3-220ENST00000505307 CHRNA5P30532 468 aa26.59■■□□□ 1.85
UBE2D3-220ENST00000505307 ARFGEF1Q9Y6D6 1849 aa26.59■■□□□ 1.85
UBE2D3-220ENST00000505307 NEFMP07197 916 aa26.57■■□□□ 1.84
UBE2D3-220ENST00000505307 NRXN2Q9P2S2 1712 aa26.56■■□□□ 1.84
UBE2D3-220ENST00000505307 KCNQ3O43525 872 aa26.55■■□□□ 1.84
UBE2D3-220ENST00000505307 A1BGP04217 495 aa26.54■■□□□ 1.84
UBE2D3-220ENST00000505307 SNRPA1P09661 255 aaKnown RBP26.54■■□□□ 1.84
UBE2D3-220ENST00000505307 C9orf131Q5VYM1 1079 aa26.54■■□□□ 1.84
UBE2D3-220ENST00000505307 MCM10Q7L590 875 aa26.54■■□□□ 1.84
UBE2D3-220ENST00000505307 PDZRN3Q9UPQ7 1066 aa26.54■■□□□ 1.84
UBE2D3-220ENST00000505307 ZNF330Q9Y3S2 320 aaPredicted RBP26.54■■□□□ 1.84
UBE2D3-220ENST00000505307 AFDNP55196 1824 aaKnown RBP26.53■■□□□ 1.84
UBE2D3-220ENST00000505307 KIF3CO14782 793 aa26.53■■□□□ 1.84
UBE2D3-220ENST00000505307 BICDL1Q6ZP65 573 aa26.53■■□□□ 1.84
UBE2D3-220ENST00000505307 TBC1D2BQ9UPU7 963 aa26.53■■□□□ 1.84
UBE2D3-220ENST00000505307 TBC1D9BQ66K14 1250 aa26.52■■□□□ 1.84
UBE2D3-220ENST00000505307 H0YIN7 160 aa26.51■■□□□ 1.83
UBE2D3-220ENST00000505307 TAF7Q15545 349 aaPredicted RBP26.51■■□□□ 1.83
UBE2D3-220ENST00000505307 TTLL6Q8N841 843 aa26.51■■□□□ 1.83
UBE2D3-220ENST00000505307 PNNQ9H307 717 aaKnown RBP26.51■■□□□ 1.83
UBE2D3-220ENST00000505307 USP16Q9Y5T5 823 aa26.51■■□□□ 1.83
UBE2D3-220ENST00000505307 CARMIL3Q8ND23 1372 aa26.5■■□□□ 1.83
UBE2D3-220ENST00000505307 C2CD5Q86YS7 1000 aa26.5■■□□□ 1.83
UBE2D3-220ENST00000505307 CAMTA2O94983 1202 aa26.49■■□□□ 1.83
UBE2D3-220ENST00000505307 SETDB2Q96T68 719 aa26.49■■□□□ 1.83
UBE2D3-220ENST00000505307 BRIP1Q9BX63 1249 aa26.49■■□□□ 1.83
UBE2D3-220ENST00000505307 SCN7AQ01118 1682 aa26.48■■□□□ 1.83
UBE2D3-220ENST00000505307 HSPA6P17066 643 aa26.48■■□□□ 1.83
UBE2D3-220ENST00000505307 PDE6BP35913 854 aa26.48■■□□□ 1.83
UBE2D3-220ENST00000505307 DCTN1Q14203 1278 aa26.48■■□□□ 1.83
UBE2D3-220ENST00000505307 DZIP3Q86Y13 1208 aaKnown RBP26.48■■□□□ 1.83
UBE2D3-220ENST00000505307 CLEC4GQ6UXB4 293 aa26.47■■□□□ 1.83
UBE2D3-220ENST00000505307 PNISRQ8TF01 805 aaKnown RBP26.47■■□□□ 1.83
UBE2D3-220ENST00000505307 RNF181Q9P0P0 153 aa26.47■■□□□ 1.83
UBE2D3-220ENST00000505307 TOMM70O94826 608 aa26.46■■□□□ 1.83
UBE2D3-220ENST00000505307 KDM2BQ8NHM5 1336 aa26.45■■□□□ 1.83
UBE2D3-220ENST00000505307 RGL2O15211 777 aa26.45■■□□□ 1.82
UBE2D3-220ENST00000505307 PRR5LQ6MZQ0 368 aa26.45■■□□□ 1.82
UBE2D3-220ENST00000505307 ZNF652Q9Y2D9 606 aa26.45■■□□□ 1.82
UBE2D3-220ENST00000505307 ZC3H4Q9UPT8 1303 aaKnown RBP26.44■■□□□ 1.82
UBE2D3-220ENST00000505307 DLEC1Q9Y238 1755 aa26.44■■□□□ 1.82
UBE2D3-220ENST00000505307 PLEKHF1Q96S99 279 aa26.44■■□□□ 1.82
UBE2D3-220ENST00000505307 CEP350Q5VT06 3117 aa26.43■■□□□ 1.82
UBE2D3-220ENST00000505307 PRAMEF22A3QJZ6 481 aa26.43■■□□□ 1.82
UBE2D3-220ENST00000505307 NPHP1O15259 732 aa26.43■■□□□ 1.82
UBE2D3-220ENST00000505307 RALBP1Q15311 655 aa26.43■■□□□ 1.82
UBE2D3-220ENST00000505307 CNBD1Q8NA66 436 aa26.43■■□□□ 1.82
UBE2D3-220ENST00000505307 LMNB1P20700 586 aa26.42■■□□□ 1.82
UBE2D3-220ENST00000505307 ST5P78524 1137 aa26.42■■□□□ 1.82
UBE2D3-220ENST00000505307 NFE2L2Q16236 605 aa26.42■■□□□ 1.82
UBE2D3-220ENST00000505307 NMRK2Q9NPI5 230 aa26.42■■□□□ 1.82
UBE2D3-220ENST00000505307 MAPK8IP3Q9UPT6 1336 aa26.4■■□□□ 1.82
UBE2D3-220ENST00000505307 ZNF622Q969S3 477 aaKnown RBP eCLIP26.4■■□□□ 1.82
UBE2D3-220ENST00000505307 PIP4K2AP48426 406 aaPredicted RBP26.39■■□□□ 1.82
UBE2D3-220ENST00000505307 SBF1O95248 1867 aa26.38■■□□□ 1.81
UBE2D3-220ENST00000505307 NBPF26B4DH59 902 aa26.38■■□□□ 1.81
UBE2D3-220ENST00000505307 NBPF10Q6P3W6 841 aaKnown RBP26.38■■□□□ 1.81
UBE2D3-220ENST00000505307 C16orf71Q8IYS4 520 aaPredicted RBP26.38■■□□□ 1.81
UBE2D3-220ENST00000505307 NBPF15Q8N660 670 aa26.38■■□□□ 1.81
UBE2D3-220ENST00000505307 MIS18AQ9NYP9 233 aa26.38■■□□□ 1.81
UBE2D3-220ENST00000505307 BCORQ6W2J9 1755 aa26.38■■□□□ 1.81
UBE2D3-220ENST00000505307 RASSF7Q02833 373 aa26.37■■□□□ 1.81
UBE2D3-220ENST00000505307 RBM46Q8TBY0 533 aaKnown RBP26.37■■□□□ 1.81
UBE2D3-220ENST00000505307 CNKSR1Q969H4 720 aa26.37■■□□□ 1.81
UBE2D3-220ENST00000505307 STYK1Q6J9G0 422 aa26.36■■□□□ 1.81
UBE2D3-220ENST00000505307 NBPF5PQ86XG9 351 aaPredicted RBP26.36■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms