RNA–Protein interactions for RNA: ENST00000504663.1

TPM3-217, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-217ENST00000504663 CCDC9Q9Y3X0 531 aaKnown RBP13.33□□□□□ -0.28
TPM3-217ENST00000504663 PXDNLA1KZ92 1463 aa13.33□□□□□ -0.28
TPM3-217ENST00000504663 PDIA6Q15084 440 aa13.32□□□□□ -0.28
TPM3-217ENST00000504663 HDGFL1Q5TGJ6 251 aa13.32□□□□□ -0.28
TPM3-217ENST00000504663 ATG3Q9NT62 314 aa13.32□□□□□ -0.28
TPM3-217ENST00000504663 LY75O60449 1722 aa13.32□□□□□ -0.28
TPM3-217ENST00000504663 ARFGEF2Q9Y6D5 1785 aa13.31□□□□□ -0.28
TPM3-217ENST00000504663 PROSER3Q2NL68 480 aa13.31□□□□□ -0.28
TPM3-217ENST00000504663 SLC4A9Q96Q91 983 aa13.31□□□□□ -0.28
TPM3-217ENST00000504663 CCDC30Q5VVM6 783 aa13.3□□□□□ -0.28
TPM3-217ENST00000504663 DZIP1LQ8IYY4 767 aaKnown RBP13.3□□□□□ -0.28
TPM3-217ENST00000504663 TMEM57Q8N5G2 664 aa13.3□□□□□ -0.28
TPM3-217ENST00000504663 NECTIN2Q92692 538 aa13.3□□□□□ -0.28
TPM3-217ENST00000504663 CLUAP1Q96AJ1 413 aa13.3□□□□□ -0.28
TPM3-217ENST00000504663 PPP4R2Q9NY27 417 aa13.3□□□□□ -0.28
TPM3-217ENST00000504663 TMOD3Q9NYL9 352 aa13.3□□□□□ -0.28
TPM3-217ENST00000504663 CHPF2Q9P2E5 772 aa13.3□□□□□ -0.28
TPM3-217ENST00000504663 RGS17Q9UGC6 210 aaPredicted RBP13.3□□□□□ -0.28
TPM3-217ENST00000504663 ASAP1Q9ULH1 1129 aa13.3□□□□□ -0.28
TPM3-217ENST00000504663 COG6Q9Y2V7 657 aa13.3□□□□□ -0.28
TPM3-217ENST00000504663 PTPRCP08575 1304 aa13.3□□□□□ -0.28
TPM3-217ENST00000504663 MVPQ14764 893 aaKnown RBP13.29□□□□□ -0.28
TPM3-217ENST00000504663 FMNL2Q96PY5 1086 aa13.29□□□□□ -0.28
TPM3-217ENST00000504663 QTRT2Q9H974 415 aaKnown RBP13.29□□□□□ -0.28
TPM3-217ENST00000504663 ADCY9O60503 1353 aa13.29□□□□□ -0.28
TPM3-217ENST00000504663 ANXA1P04083 346 aa13.28□□□□□ -0.28
TPM3-217ENST00000504663 PRIM1P49642 420 aaKnown RBP13.28□□□□□ -0.28
TPM3-217ENST00000504663 FLIIQ13045 1269 aa13.28□□□□□ -0.28
TPM3-217ENST00000504663 PTF1AQ7RTS3 328 aa13.28□□□□□ -0.28
TPM3-217ENST00000504663 PHAXQ9H814 394 aaKnown RBP13.28□□□□□ -0.28
TPM3-217ENST00000504663 USP16Q9Y5T5 823 aa13.28□□□□□ -0.28
TPM3-217ENST00000504663 KCNQ2O43526 872 aa13.27□□□□□ -0.29
TPM3-217ENST00000504663 SNRPA1P09661 255 aaKnown RBP13.27□□□□□ -0.29
TPM3-217ENST00000504663 EIF2S2P20042 333 aaKnown RBP13.27□□□□□ -0.29
TPM3-217ENST00000504663 CANXP27824 592 aaKnown RBP13.27□□□□□ -0.29
TPM3-217ENST00000504663 SEPT12Q8IYM1 358 aa13.27□□□□□ -0.29
TPM3-217ENST00000504663 TTC5Q8N0Z6 440 aa13.27□□□□□ -0.29
TPM3-217ENST00000504663 ACSBG1Q96GR2 724 aa13.27□□□□□ -0.29
TPM3-217ENST00000504663 API5Q9BZZ5 524 aaKnown RBP13.27□□□□□ -0.29
TPM3-217ENST00000504663 TAF1LQ8IZX4 1826 aa13.27□□□□□ -0.29
TPM3-217ENST00000504663 MYH14Q7Z406 1995 aaKnown RBP13.27□□□□□ -0.29
TPM3-217ENST00000504663 NBPF26B4DH59 902 aa13.26□□□□□ -0.29
TPM3-217ENST00000504663 IPO8O15397 1037 aaKnown RBP13.26□□□□□ -0.29
TPM3-217ENST00000504663 NBPF14Q5TI25 921 aa13.26□□□□□ -0.29
TPM3-217ENST00000504663 INTS3Q68E01 1043 aaKnown RBP13.26□□□□□ -0.29
TPM3-217ENST00000504663 B4GALNT3Q6L9W6 998 aa13.26□□□□□ -0.29
TPM3-217ENST00000504663 NBPF10Q6P3W6 841 aaKnown RBP13.26□□□□□ -0.29
TPM3-217ENST00000504663 NBPF15Q8N660 670 aa13.26□□□□□ -0.29
TPM3-217ENST00000504663 ATP10DQ9P241 1426 aa13.26□□□□□ -0.29
TPM3-217ENST00000504663 TNS1Q9HBL0 1735 aaKnown RBP13.25□□□□□ -0.29
TPM3-217ENST00000504663 KDM2BQ8NHM5 1336 aa13.25□□□□□ -0.29
TPM3-217ENST00000504663 TPRNQ4KMQ1 711 aa13.25□□□□□ -0.29
TPM3-217ENST00000504663 STK31Q9BXU1 1019 aa13.25□□□□□ -0.29
TPM3-217ENST00000504663 DDX21Q9NR30 783 aaKnown RBP eCLIP13.25□□□□□ -0.29
TPM3-217ENST00000504663 KAT6BQ8WYB5 2073 aa13.25□□□□□ -0.29
TPM3-217ENST00000504663 ERBB4Q15303 1308 aa13.24□□□□□ -0.29
TPM3-217ENST00000504663 F6X3S4 739 aa13.24□□□□□ -0.29
TPM3-217ENST00000504663 MS4A1P11836 297 aa13.24□□□□□ -0.29
TPM3-217ENST00000504663 FAM182BQ5T319 152 aa13.24□□□□□ -0.29
TPM3-217ENST00000504663 DNAJC10Q8IXB1 793 aa13.24□□□□□ -0.29
TPM3-217ENST00000504663 FTSJ3Q8IY81 847 aaKnown RBP13.24□□□□□ -0.29
TPM3-217ENST00000504663 DBF4Q9UBU7 674 aaPredicted RBP13.24□□□□□ -0.29
TPM3-217ENST00000504663 PALLDQ8WX93 1383 aa13.23□□□□□ -0.29
TPM3-217ENST00000504663 ZBTB7BO15156 539 aaPredicted RBP13.23□□□□□ -0.29
TPM3-217ENST00000504663 PTCD1O75127 700 aaKnown RBP13.23□□□□□ -0.29
TPM3-217ENST00000504663 ZNF772Q68DY9 489 aaPredicted RBP13.23□□□□□ -0.29
TPM3-217ENST00000504663 ZBTB40Q9NUA8 1239 aa13.23□□□□□ -0.29
TPM3-217ENST00000504663 PCDHB15Q9Y5E8 787 aa13.23□□□□□ -0.29
TPM3-217ENST00000504663 ANKRD36CQ5JPF3 1778 aa13.22□□□□□ -0.29
TPM3-217ENST00000504663 BCORQ6W2J9 1755 aa13.22□□□□□ -0.29
TPM3-217ENST00000504663 IBTKQ9P2D0 1353 aaPredicted RBP13.22□□□□□ -0.29
TPM3-217ENST00000504663 PIP4K2AP48426 406 aaPredicted RBP13.22□□□□□ -0.29
TPM3-217ENST00000504663 RBM6P78332 1123 aaKnown RBP13.22□□□□□ -0.29
TPM3-217ENST00000504663 ITPRIPQ8IWB1 547 aa13.22□□□□□ -0.29
TPM3-217ENST00000504663 FBXO3Q9UK99 471 aa13.22□□□□□ -0.29
TPM3-217ENST00000504663 DDX19BQ9UMR2 479 aa13.22□□□□□ -0.29
TPM3-217ENST00000504663 AFDNP55196 1824 aaKnown RBP13.22□□□□□ -0.29
TPM3-217ENST00000504663 EP400Q96L91 3159 aa13.21□□□□□ -0.29
TPM3-217ENST00000504663 ITPK1Q13572 414 aa13.21□□□□□ -0.29
TPM3-217ENST00000504663 POTEAQ6S8J7 498 aa13.21□□□□□ -0.29
TPM3-217ENST00000504663 SYTL4Q96C24 671 aaPredicted RBP13.21□□□□□ -0.29
TPM3-217ENST00000504663 HYPKQ9NX55 129 aa13.21□□□□□ -0.29
TPM3-217ENST00000504663 A1BGP04217 495 aa13.2□□□□□ -0.3
TPM3-217ENST00000504663 CYP19A1P11511 503 aaPredicted RBP13.2□□□□□ -0.3
TPM3-217ENST00000504663 FKBP5Q13451 457 aaPredicted RBP13.2□□□□□ -0.3
TPM3-217ENST00000504663 AAMPQ13685 434 aa13.2□□□□□ -0.3
TPM3-217ENST00000504663 CHMP4AQ9BY43 222 aa13.2□□□□□ -0.3
TPM3-217ENST00000504663 RGPD3A6NKT7 1758 aaPredicted RBP13.2□□□□□ -0.3
TPM3-217ENST00000504663 RGPD4Q7Z3J3 1758 aa13.2□□□□□ -0.3
TPM3-217ENST00000504663 SCN7AQ01118 1682 aa13.19□□□□□ -0.3
TPM3-217ENST00000504663 A0A0G2JS52 829 aa13.19□□□□□ -0.3
TPM3-217ENST00000504663 MYT1Q01538 1121 aa13.19□□□□□ -0.3
TPM3-217ENST00000504663 BEND3Q5T5X7 828 aa13.19□□□□□ -0.3
TPM3-217ENST00000504663 XAGE3Q8WTP9 111 aa13.19□□□□□ -0.3
TPM3-217ENST00000504663 LOC102724428A0A0B4J2F2 783 aa13.18□□□□□ -0.3
TPM3-217ENST00000504663 PI4KAP2A4QPH2 592 aa13.18□□□□□ -0.3
TPM3-217ENST00000504663 IGHDP01880 384 aa13.18□□□□□ -0.3
TPM3-217ENST00000504663 SIK1P57059 783 aa13.18□□□□□ -0.3
TPM3-217ENST00000504663 KSR2Q6VAB6 950 aa13.18□□□□□ -0.3
TPM3-217ENST00000504663 PI4KAP1Q8N8J0 262 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms