RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 NMRK2Q9NPI5 230 aa15.97■□□□□ 0.15
MED28-203ENST00000503945 TOMM70O94826 608 aa15.96■□□□□ 0.15
MED28-203ENST00000503945 STARD3NLO95772 234 aa15.96■□□□□ 0.15
MED28-203ENST00000503945 DDR1Q08345 913 aa15.96■□□□□ 0.15
MED28-203ENST00000503945 C9orf131Q5VYM1 1079 aa15.96■□□□□ 0.15
MED28-203ENST00000503945 PIM2Q9P1W9 311 aa15.96■□□□□ 0.15
MED28-203ENST00000503945 TJP1Q07157 1748 aa15.96■□□□□ 0.15
MED28-203ENST00000503945 USP42Q9H9J4 1324 aaKnown RBP15.95■□□□□ 0.14
MED28-203ENST00000503945 CYP19A1P11511 503 aaPredicted RBP15.95■□□□□ 0.14
MED28-203ENST00000503945 TM4SF1P30408 202 aa15.95■□□□□ 0.14
MED28-203ENST00000503945 TEX13AQ9BXU3 409 aaPredicted RBP15.95■□□□□ 0.14
MED28-203ENST00000503945 RSPH6AQ9H0K4 717 aa15.95■□□□□ 0.14
MED28-203ENST00000503945 APLP1P51693 650 aa15.94■□□□□ 0.14
MED28-203ENST00000503945 ZNF790Q6PG37 636 aa15.94■□□□□ 0.14
MED28-203ENST00000503945 DNAJC5GQ8N7S2 189 aa15.94■□□□□ 0.14
MED28-203ENST00000503945 RTF1Q92541 710 aaKnown RBP15.94■□□□□ 0.14
MED28-203ENST00000503945 SBF1O95248 1867 aa15.94■□□□□ 0.14
MED28-203ENST00000503945 VIRMAQ69YN4 1812 aaKnown RBP15.94■□□□□ 0.14
MED28-203ENST00000503945 ADAMTS7Q9UKP4 1686 aa15.93■□□□□ 0.14
MED28-203ENST00000503945 POLRMTO00411 1230 aaKnown RBP15.93■□□□□ 0.14
MED28-203ENST00000503945 NEFMP07197 916 aa15.93■□□□□ 0.14
MED28-203ENST00000503945 CHRNA5P30532 468 aa15.93■□□□□ 0.14
MED28-203ENST00000503945 DALRD3Q5D0E6 543 aaKnown RBP15.93■□□□□ 0.14
MED28-203ENST00000503945 USPL1Q5W0Q7 1092 aa15.93■□□□□ 0.14
MED28-203ENST00000503945 BTBD11A6QL63 1104 aa15.92■□□□□ 0.14
MED28-203ENST00000503945 CANXP27824 592 aaKnown RBP15.91■□□□□ 0.14
MED28-203ENST00000503945 NPM2Q86SE8 214 aaKnown RBP15.91■□□□□ 0.14
MED28-203ENST00000503945 ZNF496Q96IT1 587 aaPredicted RBP15.91■□□□□ 0.14
MED28-203ENST00000503945 NARFQ9UHQ1 456 aa15.91■□□□□ 0.14
MED28-203ENST00000503945 AFDNP55196 1824 aaKnown RBP15.9■□□□□ 0.14
MED28-203ENST00000503945 HTATSF1O43719 755 aaKnown RBP15.9■□□□□ 0.14
MED28-203ENST00000503945 FMNL2Q96PY5 1086 aa15.9■□□□□ 0.14
MED28-203ENST00000503945 PNNQ9H307 717 aaKnown RBP15.9■□□□□ 0.14
MED28-203ENST00000503945 SOS1Q07889 1333 aaPredicted RBP15.9■□□□□ 0.14
MED28-203ENST00000503945 A0A087WZG4 1122 aa15.89■□□□□ 0.13
MED28-203ENST00000503945 RBM46Q8TBY0 533 aaKnown RBP15.89■□□□□ 0.13
MED28-203ENST00000503945 RRAGCQ9HB90 399 aa15.89■□□□□ 0.13
MED28-203ENST00000503945 RNF181Q9P0P0 153 aa15.89■□□□□ 0.13
MED28-203ENST00000503945 COL3A1P02461 1466 aaPredicted RBP15.89■□□□□ 0.13
MED28-203ENST00000503945 NFIXQ14938 502 aa15.88■□□□□ 0.13
MED28-203ENST00000503945 ZBTB1Q9Y2K1 713 aa15.88■□□□□ 0.13
MED28-203ENST00000503945 KCPQ6ZWJ8 1503 aa15.88■□□□□ 0.13
MED28-203ENST00000503945 HTRA3P83110 453 aa15.87■□□□□ 0.13
MED28-203ENST00000503945 MCM10Q7L590 875 aa15.87■□□□□ 0.13
MED28-203ENST00000503945 C16orf71Q8IYS4 520 aaPredicted RBP15.87■□□□□ 0.13
MED28-203ENST00000503945 BCL2L12Q9HB09 334 aa15.87■□□□□ 0.13
MED28-203ENST00000503945 CCDC88AQ3V6T2 1871 aa15.86■□□□□ 0.13
MED28-203ENST00000503945 EIF5P55010 431 aaKnown RBP15.86■□□□□ 0.13
MED28-203ENST00000503945 DDX10Q13206 875 aaKnown RBP15.86■□□□□ 0.13
MED28-203ENST00000503945 RALBP1Q15311 655 aa15.86■□□□□ 0.13
MED28-203ENST00000503945 TAF7Q15545 349 aaPredicted RBP15.86■□□□□ 0.13
MED28-203ENST00000503945 KDM2BQ8NHM5 1336 aa15.86■□□□□ 0.13
MED28-203ENST00000503945 HEG1Q9ULI3 1381 aa15.86■□□□□ 0.13
MED28-203ENST00000503945 KCNQ3O43525 872 aa15.85■□□□□ 0.13
MED28-203ENST00000503945 SERPINB2P05120 415 aa15.85■□□□□ 0.13
MED28-203ENST00000503945 ZNF330Q9Y3S2 320 aaPredicted RBP15.85■□□□□ 0.13
MED28-203ENST00000503945 CEMIPQ8WUJ3 1361 aa15.85■□□□□ 0.13
MED28-203ENST00000503945 WDR90Q96KV7 1748 aa15.85■□□□□ 0.13
MED28-203ENST00000503945 A1BGP04217 495 aa15.84■□□□□ 0.13
MED28-203ENST00000503945 SNRPA1P09661 255 aaKnown RBP15.84■□□□□ 0.13
MED28-203ENST00000503945 IL6STP40189 918 aaPredicted RBP15.84■□□□□ 0.13
MED28-203ENST00000503945 RASSF7Q02833 373 aa15.84■□□□□ 0.13
MED28-203ENST00000503945 FSTL1Q12841 308 aa15.84■□□□□ 0.13
MED28-203ENST00000503945 DCTN1Q14203 1278 aa15.84■□□□□ 0.13
MED28-203ENST00000503945 NRXN2Q9P2S2 1712 aa15.84■□□□□ 0.13
MED28-203ENST00000503945 COL15A1P39059 1388 aa15.84■□□□□ 0.13
MED28-203ENST00000503945 MRC1P22897 1456 aa15.84■□□□□ 0.13
MED28-203ENST00000503945 PRELPP51888 382 aa15.83■□□□□ 0.12
MED28-203ENST00000503945 TBC1D2BQ9UPU7 963 aa15.83■□□□□ 0.12
MED28-203ENST00000503945 USP16Q9Y5T5 823 aa15.83■□□□□ 0.12
MED28-203ENST00000503945 BICDL1Q6ZP65 573 aa15.82■□□□□ 0.12
MED28-203ENST00000503945 C2CD5Q86YS7 1000 aa15.82■□□□□ 0.12
MED28-203ENST00000503945 TTLL6Q8N841 843 aa15.81■□□□□ 0.12
MED28-203ENST00000503945 PNISRQ8TF01 805 aaKnown RBP15.81■□□□□ 0.12
MED28-203ENST00000503945 KLRG1Q96E93 195 aa15.81■□□□□ 0.12
MED28-203ENST00000503945 PLEKHF1Q96S99 279 aa15.81■□□□□ 0.12
MED28-203ENST00000503945 MIS18AQ9NYP9 233 aa15.81■□□□□ 0.12
MED28-203ENST00000503945 UBR2Q8IWV8 1755 aa15.8■□□□□ 0.12
MED28-203ENST00000503945 DLEC1Q9Y238 1755 aa15.8■□□□□ 0.12
MED28-203ENST00000503945 TNRC6CQ9HCJ0 1690 aaKnown RBP15.8■□□□□ 0.12
MED28-203ENST00000503945 MAPK8IP3Q9UPT6 1336 aa15.79■□□□□ 0.12
MED28-203ENST00000503945 GLTPD2A6NH11 291 aa15.79■□□□□ 0.12
MED28-203ENST00000503945 H0YIN7 160 aa15.79■□□□□ 0.12
MED28-203ENST00000503945 LMNB1P20700 586 aa15.79■□□□□ 0.12
MED28-203ENST00000503945 NFE2L2Q16236 605 aa15.79■□□□□ 0.12
MED28-203ENST00000503945 SETDB2Q96T68 719 aa15.79■□□□□ 0.12
MED28-203ENST00000503945 CARMIL3Q8ND23 1372 aa15.78■□□□□ 0.12
MED28-203ENST00000503945 TBC1D9BQ66K14 1250 aa15.78■□□□□ 0.12
MED28-203ENST00000503945 JMYQ8N9B5 988 aa15.78■□□□□ 0.12
MED28-203ENST00000503945 PRAMEF22A3QJZ6 481 aa15.77■□□□□ 0.12
MED28-203ENST00000503945 NFKBIEO00221 500 aa15.77■□□□□ 0.12
MED28-203ENST00000503945 NPHP1O15259 732 aa15.77■□□□□ 0.12
MED28-203ENST00000503945 VEGFAP15692 232 aaPredicted RBP15.77■□□□□ 0.12
MED28-203ENST00000503945 DZIP3Q86Y13 1208 aaKnown RBP15.77■□□□□ 0.12
MED28-203ENST00000503945 CCDC24Q8N4L8 307 aa15.77■□□□□ 0.12
MED28-203ENST00000503945 SMC1BQ8NDV3 1235 aa15.77■□□□□ 0.12
MED28-203ENST00000503945 ANKRD31Q8N7Z5 1873 aa15.77■□□□□ 0.11
MED28-203ENST00000503945 ZC3H4Q9UPT8 1303 aaKnown RBP15.76■□□□□ 0.11
MED28-203ENST00000503945 PDE6BP35913 854 aa15.76■□□□□ 0.11
MED28-203ENST00000503945 RIPK4P57078 832 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms