RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 KDM2BQ8NHM5 1336 aa20.07■□□□□ 0.8
TRAF4-212ENST00000498540 ZPR1O75312 459 aa20.07■□□□□ 0.8
TRAF4-212ENST00000498540 PCGF6Q9BYE7 350 aa20.07■□□□□ 0.8
TRAF4-212ENST00000498540 RASSF7Q02833 373 aa20.06■□□□□ 0.8
TRAF4-212ENST00000498540 SLC39A6Q13433 755 aa20.06■□□□□ 0.8
TRAF4-212ENST00000498540 RRAGCQ9HB90 399 aa20.06■□□□□ 0.8
TRAF4-212ENST00000498540 COL15A1P39059 1388 aa20.06■□□□□ 0.8
TRAF4-212ENST00000498540 CYP19A1P11511 503 aaPredicted RBP20.05■□□□□ 0.8
TRAF4-212ENST00000498540 FSTL1Q12841 308 aa20.05■□□□□ 0.8
TRAF4-212ENST00000498540 KNSTRNQ9Y448 316 aa20.05■□□□□ 0.8
TRAF4-212ENST00000498540 UBR2Q8IWV8 1755 aa20.05■□□□□ 0.8
TRAF4-212ENST00000498540 RNMTO43148 476 aaKnown RBP20.04■□□□□ 0.8
TRAF4-212ENST00000498540 NFIXQ14938 502 aa20.04■□□□□ 0.8
TRAF4-212ENST00000498540 KLRG1Q96E93 195 aa20.04■□□□□ 0.8
TRAF4-212ENST00000498540 ZBTB1Q9Y2K1 713 aa20.04■□□□□ 0.8
TRAF4-212ENST00000498540 TIAM2Q8IVF5 1701 aa20.04■□□□□ 0.8
TRAF4-212ENST00000498540 HMOX1P09601 288 aa20.03■□□□□ 0.8
TRAF4-212ENST00000498540 NARFQ9UHQ1 456 aa20.03■□□□□ 0.8
TRAF4-212ENST00000498540 AMER1Q5JTC6 1135 aaPredicted RBP20.02■□□□□ 0.8
TRAF4-212ENST00000498540 BCL2L12Q9HB09 334 aa20.02■□□□□ 0.8
TRAF4-212ENST00000498540 CCDC88AQ3V6T2 1871 aa20.02■□□□□ 0.8
TRAF4-212ENST00000498540 CARMIL3Q8ND23 1372 aa20.01■□□□□ 0.79
TRAF4-212ENST00000498540 PRELPP51888 382 aa20.01■□□□□ 0.79
TRAF4-212ENST00000498540 JMYQ8N9B5 988 aa20.01■□□□□ 0.79
TRAF4-212ENST00000498540 ZC3H4Q9UPT8 1303 aaKnown RBP20■□□□□ 0.79
TRAF4-212ENST00000498540 ANKRD31Q8N7Z5 1873 aa19.99■□□□□ 0.79
TRAF4-212ENST00000498540 SERPINB2P05120 415 aa19.99■□□□□ 0.79
TRAF4-212ENST00000498540 MTHFSDQ2M296 383 aaKnown RBP19.99■□□□□ 0.79
TRAF4-212ENST00000498540 SMC1BQ8NDV3 1235 aa19.98■□□□□ 0.79
TRAF4-212ENST00000498540 SCN7AQ01118 1682 aa19.97■□□□□ 0.79
TRAF4-212ENST00000498540 LMNB1P20700 586 aa19.97■□□□□ 0.79
TRAF4-212ENST00000498540 CANXP27824 592 aaKnown RBP19.97■□□□□ 0.79
TRAF4-212ENST00000498540 C2CD5Q86YS7 1000 aa19.97■□□□□ 0.79
TRAF4-212ENST00000498540 VSIG10Q8N0Z9 540 aa19.97■□□□□ 0.79
TRAF4-212ENST00000498540 COL11A2P13942 1736 aaPredicted RBP19.96■□□□□ 0.79
TRAF4-212ENST00000498540 COL13A1Q5TAT6 717 aaPredicted RBP19.96■□□□□ 0.79
TRAF4-212ENST00000498540 TTLL6Q8N841 843 aa19.96■□□□□ 0.79
TRAF4-212ENST00000498540 GLTPD2A6NH11 291 aa19.95■□□□□ 0.78
TRAF4-212ENST00000498540 NFKBIEO00221 500 aa19.95■□□□□ 0.78
TRAF4-212ENST00000498540 BICDL1Q6ZP65 573 aa19.95■□□□□ 0.78
TRAF4-212ENST00000498540 SIPA1L3O60292 1781 aaPredicted RBP19.95■□□□□ 0.78
TRAF4-212ENST00000498540 KIF7Q2M1P5 1343 aa19.94■□□□□ 0.78
TRAF4-212ENST00000498540 H0YIN7 160 aa19.93■□□□□ 0.78
TRAF4-212ENST00000498540 DIAPH1O60610 1272 aaKnown RBP19.93■□□□□ 0.78
TRAF4-212ENST00000498540 EIF5P55010 431 aaKnown RBP19.93■□□□□ 0.78
TRAF4-212ENST00000498540 PCNTO95613 3336 aa19.93■□□□□ 0.78
TRAF4-212ENST00000498540 VEGFAP15692 232 aaPredicted RBP19.92■□□□□ 0.78
TRAF4-212ENST00000498540 FER1L6Q2WGJ9 1857 aa19.92■□□□□ 0.78
TRAF4-212ENST00000498540 DICER1Q9UPY3 1922 aaKnown RBP19.92■□□□□ 0.78
TRAF4-212ENST00000498540 COL3A1P02461 1466 aaPredicted RBP19.92■□□□□ 0.78
TRAF4-212ENST00000498540 TBC1D9BQ66K14 1250 aa19.91■□□□□ 0.78
TRAF4-212ENST00000498540 TTC5Q8N0Z6 440 aa19.91■□□□□ 0.78
TRAF4-212ENST00000498540 ZNF496Q96IT1 587 aaPredicted RBP19.91■□□□□ 0.78
TRAF4-212ENST00000498540 CACNA1SQ13698 1873 aa19.9■□□□□ 0.78
TRAF4-212ENST00000498540 STARD3NLO95772 234 aa19.9■□□□□ 0.78
TRAF4-212ENST00000498540 CC2D1BQ5T0F9 858 aaKnown RBP19.9■□□□□ 0.78
TRAF4-212ENST00000498540 A0A087WZG4 1122 aa19.89■□□□□ 0.77
TRAF4-212ENST00000498540 POTECB2RU33 542 aa19.89■□□□□ 0.77
TRAF4-212ENST00000498540 PER1O15534 1290 aaPredicted RBP19.89■□□□□ 0.77
TRAF4-212ENST00000498540 CCDC24Q8N4L8 307 aa19.89■□□□□ 0.77
TRAF4-212ENST00000498540 HEG1Q9ULI3 1381 aa19.89■□□□□ 0.77
TRAF4-212ENST00000498540 BCORQ6W2J9 1755 aa19.88■□□□□ 0.77
TRAF4-212ENST00000498540 PRR5LQ6MZQ0 368 aa19.88■□□□□ 0.77
TRAF4-212ENST00000498540 IL17REQ8NFR9 667 aa19.88■□□□□ 0.77
TRAF4-212ENST00000498540 ZNF622Q969S3 477 aaKnown RBP eCLIP19.88■□□□□ 0.77
TRAF4-212ENST00000498540 ZNF219Q9P2Y4 722 aaPredicted RBP19.88■□□□□ 0.77
TRAF4-212ENST00000498540 ZNF330Q9Y3S2 320 aaPredicted RBP19.88■□□□□ 0.77
TRAF4-212ENST00000498540 C21orf2O43822 256 aa19.87■□□□□ 0.77
TRAF4-212ENST00000498540 ZNF790Q6PG37 636 aa19.87■□□□□ 0.77
TRAF4-212ENST00000498540 TBC1D2BQ9UPU7 963 aa19.87■□□□□ 0.77
TRAF4-212ENST00000498540 TEFQ10587 303 aa19.86■□□□□ 0.77
TRAF4-212ENST00000498540 BRIP1Q9BX63 1249 aa19.86■□□□□ 0.77
TRAF4-212ENST00000498540 SLX4Q8IY92 1834 aa19.86■□□□□ 0.77
TRAF4-212ENST00000498540 ARFGEF2Q9Y6D5 1785 aa19.85■□□□□ 0.77
TRAF4-212ENST00000498540 CAPN15O75808 1086 aa19.85■□□□□ 0.77
TRAF4-212ENST00000498540 PDE6BP35913 854 aa19.85■□□□□ 0.77
TRAF4-212ENST00000498540 GNAT3A8MTJ3 354 aa19.84■□□□□ 0.77
TRAF4-212ENST00000498540 U2SURPO15042 1029 aaKnown RBP19.84■□□□□ 0.77
TRAF4-212ENST00000498540 IL6STP40189 918 aaPredicted RBP19.84■□□□□ 0.77
TRAF4-212ENST00000498540 ERFEQ4G0M1 354 aa19.84■□□□□ 0.77
TRAF4-212ENST00000498540 TNS4Q8IZW8 715 aa19.84■□□□□ 0.77
TRAF4-212ENST00000498540 CCER1Q8TC90 406 aaPredicted RBP19.84■□□□□ 0.77
TRAF4-212ENST00000498540 TEX13AQ9BXU3 409 aaPredicted RBP19.84■□□□□ 0.77
TRAF4-212ENST00000498540 PDZRN3Q9UPQ7 1066 aa19.84■□□□□ 0.77
TRAF4-212ENST00000498540 A1BGP04217 495 aa19.83■□□□□ 0.77
TRAF4-212ENST00000498540 HSPA1AP0DMV8 641 aaKnown RBP19.83■□□□□ 0.77
TRAF4-212ENST00000498540 HSPA1BP0DMV9 641 aaKnown RBP19.83■□□□□ 0.77
TRAF4-212ENST00000498540 DPY19L2Q6NUT2 758 aa19.83■□□□□ 0.77
TRAF4-212ENST00000498540 GAS2L2Q8NHY3 880 aa19.83■□□□□ 0.77
TRAF4-212ENST00000498540 CAMTA2O94983 1202 aa19.82■□□□□ 0.76
TRAF4-212ENST00000498540 CNGB1Q14028 1251 aaPredicted RBP19.82■□□□□ 0.76
TRAF4-212ENST00000498540 CNBD1Q8NA66 436 aa19.82■□□□□ 0.76
TRAF4-212ENST00000498540 FMNL2Q96PY5 1086 aa19.82■□□□□ 0.76
TRAF4-212ENST00000498540 CEMIPQ8WUJ3 1361 aa19.82■□□□□ 0.76
TRAF4-212ENST00000498540 LTBP3Q9NS15 1303 aa19.81■□□□□ 0.76
TRAF4-212ENST00000498540 KCNQ3O43525 872 aa19.81■□□□□ 0.76
TRAF4-212ENST00000498540 TAOK3Q9H2K8 898 aa19.81■□□□□ 0.76
TRAF4-212ENST00000498540 PRPF40BQ6NWY9 871 aaKnown RBP19.8■□□□□ 0.76
TRAF4-212ENST00000498540 SETDB2Q96T68 719 aa19.8■□□□□ 0.76
TRAF4-212ENST00000498540 POTEIP0CG38 1075 aa19.79■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms