RNA–Protein interactions for RNA: ENST00000497544.2

CTSD-206, Transcript of cathepsin D, humanhuman

TSL 2

Gene CTSD, Length 783 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-206ENST00000497544 PALLDQ8WX93 1383 aa26.07■■□□□ 1.76
CTSD-206ENST00000497544 PTCD1O75127 700 aaKnown RBP26.06■■□□□ 1.76
CTSD-206ENST00000497544 SLC34A2O95436 690 aa26.06■■□□□ 1.76
CTSD-206ENST00000497544 IFT57Q9NWB7 429 aa26.06■■□□□ 1.76
CTSD-206ENST00000497544 KCNQ3O43525 872 aa26.05■■□□□ 1.76
CTSD-206ENST00000497544 TFCP2L1Q9NZI6 479 aa26.05■■□□□ 1.76
CTSD-206ENST00000497544 GOLGA2Q08379 1002 aa26.04■■□□□ 1.76
CTSD-206ENST00000497544 ZNF853P0CG23 659 aa26.03■■□□□ 1.76
CTSD-206ENST00000497544 ZNF521Q96K83 1311 aa26.03■■□□□ 1.76
CTSD-206ENST00000497544 LOC102724428A0A0B4J2F2 783 aa26.02■■□□□ 1.76
CTSD-206ENST00000497544 SIK1P57059 783 aa26.02■■□□□ 1.76
CTSD-206ENST00000497544 FMNL2Q96PY5 1086 aa26.02■■□□□ 1.76
CTSD-206ENST00000497544 SLC27A3Q5K4L6 730 aa26.01■■□□□ 1.75
CTSD-206ENST00000497544 MBIPQ9NS73 344 aa26.01■■□□□ 1.75
CTSD-206ENST00000497544 ATP6V1AP38606 617 aa26■■□□□ 1.75
CTSD-206ENST00000497544 ZNF496Q96IT1 587 aaPredicted RBP26■■□□□ 1.75
CTSD-206ENST00000497544 CCNL1Q9UK58 526 aaPredicted RBP26■■□□□ 1.75
CTSD-206ENST00000497544 LY75O60449 1722 aa26■■□□□ 1.75
CTSD-206ENST00000497544 PCNTO95613 3336 aa25.99■■□□□ 1.75
CTSD-206ENST00000497544 KCNQ4P56696 695 aa25.99■■□□□ 1.75
CTSD-206ENST00000497544 JMYQ8N9B5 988 aa25.99■■□□□ 1.75
CTSD-206ENST00000497544 YTHDC1Q96MU7 727 aaKnown RBP25.99■■□□□ 1.75
CTSD-206ENST00000497544 MYH16Q9H6N6 1097 aa25.99■■□□□ 1.75
CTSD-206ENST00000497544 ZBED9Q6R2W3 1325 aa25.98■■□□□ 1.75
CTSD-206ENST00000497544 EIF4A1P60842 406 aaKnown RBP25.98■■□□□ 1.75
CTSD-206ENST00000497544 HMGB2P26583 209 aaKnown RBP25.97■■□□□ 1.75
CTSD-206ENST00000497544 KLRG1Q96E93 195 aa25.97■■□□□ 1.75
CTSD-206ENST00000497544 SPINK5Q9NQ38 1064 aaPredicted RBP25.97■■□□□ 1.75
CTSD-206ENST00000497544 KDM3BQ7LBC6 1761 aa25.97■■□□□ 1.75
CTSD-206ENST00000497544 E9PSI1 815 aa25.96■■□□□ 1.75
CTSD-206ENST00000497544 TOMM70O94826 608 aa25.96■■□□□ 1.75
CTSD-206ENST00000497544 VSIG10Q8N0Z9 540 aa25.96■■□□□ 1.75
CTSD-206ENST00000497544 TSR2Q969E8 191 aaKnown RBP25.96■■□□□ 1.75
CTSD-206ENST00000497544 CD2APQ9Y5K6 639 aa25.96■■□□□ 1.75
CTSD-206ENST00000497544 HEG1Q9ULI3 1381 aa25.95■■□□□ 1.75
CTSD-206ENST00000497544 SNRPA1P09661 255 aaKnown RBP25.95■■□□□ 1.74
CTSD-206ENST00000497544 MSL1Q68DK7 614 aa25.95■■□□□ 1.74
CTSD-206ENST00000497544 CDCA7LQ96GN5 454 aa25.95■■□□□ 1.74
CTSD-206ENST00000497544 HTRA3P83110 453 aa25.94■■□□□ 1.74
CTSD-206ENST00000497544 SLFN5Q08AF3 891 aa25.94■■□□□ 1.74
CTSD-206ENST00000497544 SLC4A9Q96Q91 983 aa25.94■■□□□ 1.74
CTSD-206ENST00000497544 TEX13AQ9BXU3 409 aaPredicted RBP25.94■■□□□ 1.74
CTSD-206ENST00000497544 UBR2Q8IWV8 1755 aa25.94■■□□□ 1.74
CTSD-206ENST00000497544 KCPQ6ZWJ8 1503 aa25.93■■□□□ 1.74
CTSD-206ENST00000497544 COL23A1Q86Y22 540 aaPredicted RBP25.92■■□□□ 1.74
CTSD-206ENST00000497544 DNAJC10Q8IXB1 793 aa25.92■■□□□ 1.74
CTSD-206ENST00000497544 FANCIQ9NVI1 1328 aa25.91■■□□□ 1.74
CTSD-206ENST00000497544 MSH5O43196 834 aa25.91■■□□□ 1.74
CTSD-206ENST00000497544 ITPK1Q13572 414 aa25.91■■□□□ 1.74
CTSD-206ENST00000497544 CICQ96RK0 1608 aaPredicted RBP25.91■■□□□ 1.74
CTSD-206ENST00000497544 WWC3Q9ULE0 1092 aa25.9■■□□□ 1.74
CTSD-206ENST00000497544 STARD3NLO95772 234 aa25.89■■□□□ 1.74
CTSD-206ENST00000497544 KRT24Q2M2I5 525 aa25.89■■□□□ 1.74
CTSD-206ENST00000497544 DUSP27Q5VZP5 1158 aa25.89■■□□□ 1.74
CTSD-206ENST00000497544 USP16Q9Y5T5 823 aa25.89■■□□□ 1.74
CTSD-206ENST00000497544 ELL2O00472 640 aaPredicted RBP25.88■■□□□ 1.73
CTSD-206ENST00000497544 PRAMEF22A3QJZ6 481 aa25.87■■□□□ 1.73
CTSD-206ENST00000497544 EXOSC9Q06265 439 aaKnown RBP25.87■■□□□ 1.73
CTSD-206ENST00000497544 TRMT2AQ8IZ69 625 aaKnown RBP25.87■■□□□ 1.73
CTSD-206ENST00000497544 C8orf58Q8NAV2 365 aa25.87■■□□□ 1.73
CTSD-206ENST00000497544 LINC00116Q8NCU8 138 aa25.87■■□□□ 1.73
CTSD-206ENST00000497544 ZNF831Q5JPB2 1677 aa25.87■■□□□ 1.73
CTSD-206ENST00000497544 CYP19A1P11511 503 aaPredicted RBP25.85■■□□□ 1.73
CTSD-206ENST00000497544 EIF2S2P20042 333 aaKnown RBP25.85■■□□□ 1.73
CTSD-206ENST00000497544 TAF1LQ8IZX4 1826 aa25.84■■□□□ 1.73
CTSD-206ENST00000497544 HOXB7P09629 217 aa25.84■■□□□ 1.73
CTSD-206ENST00000497544 CRKLP46109 303 aaKnown RBP25.83■■□□□ 1.73
CTSD-206ENST00000497544 TWISTNBQ3B726 338 aaPredicted RBP25.83■■□□□ 1.73
CTSD-206ENST00000497544 RC3H1Q5TC82 1133 aaKnown RBP25.83■■□□□ 1.73
CTSD-206ENST00000497544 TSPYL6Q8N831 410 aa25.83■■□□□ 1.73
CTSD-206ENST00000497544 AK7Q96M32 723 aa25.83■■□□□ 1.73
CTSD-206ENST00000497544 CHMP4AQ9BY43 222 aa25.83■■□□□ 1.73
CTSD-206ENST00000497544 SOS1Q07889 1333 aaPredicted RBP25.83■■□□□ 1.73
CTSD-206ENST00000497544 NMRK2Q9NPI5 230 aa25.82■■□□□ 1.72
CTSD-206ENST00000497544 TJP1Q07157 1748 aa25.82■■□□□ 1.72
CTSD-206ENST00000497544 C5P01031 1676 aa25.81■■□□□ 1.72
CTSD-206ENST00000497544 A1BGP04217 495 aa25.81■■□□□ 1.72
CTSD-206ENST00000497544 CCDC87Q9NVE4 849 aa25.81■■□□□ 1.72
CTSD-206ENST00000497544 NECTIN2Q92692 538 aa25.8■■□□□ 1.72
CTSD-206ENST00000497544 CNTNAP4Q9C0A0 1308 aa25.8■■□□□ 1.72
CTSD-206ENST00000497544 VAMP4O75379 141 aa25.79■■□□□ 1.72
CTSD-206ENST00000497544 CANXP27824 592 aaKnown RBP25.79■■□□□ 1.72
CTSD-206ENST00000497544 HDGFL1Q5TGJ6 251 aa25.79■■□□□ 1.72
CTSD-206ENST00000497544 INTS5Q6P9B9 1019 aaKnown RBP25.79■■□□□ 1.72
CTSD-206ENST00000497544 RBM46Q8TBY0 533 aaKnown RBP25.79■■□□□ 1.72
CTSD-206ENST00000497544 MYH14Q7Z406 1995 aaKnown RBP25.78■■□□□ 1.72
CTSD-206ENST00000497544 C4BP0C0L5 1744 aa25.77■■□□□ 1.72
CTSD-206ENST00000497544 COL5A3P25940 1745 aaPredicted RBP25.77■■□□□ 1.72
CTSD-206ENST00000497544 GNPATO15228 680 aa25.77■■□□□ 1.72
CTSD-206ENST00000497544 RPS6KA4O75676 772 aa25.77■■□□□ 1.72
CTSD-206ENST00000497544 CCDC30Q5VVM6 783 aa25.77■■□□□ 1.72
CTSD-206ENST00000497544 RTCBQ9Y3I0 505 aaKnown RBP25.77■■□□□ 1.72
CTSD-206ENST00000497544 NPM2Q86SE8 214 aaKnown RBP25.76■■□□□ 1.71
CTSD-206ENST00000497544 ZBTB1Q9Y2K1 713 aa25.76■■□□□ 1.71
CTSD-206ENST00000497544 LAMB4A4D0S4 1761 aa25.75■■□□□ 1.71
CTSD-206ENST00000497544 ERBB4Q15303 1308 aa25.74■■□□□ 1.71
CTSD-206ENST00000497544 PIP4K2AP48426 406 aaPredicted RBP25.74■■□□□ 1.71
CTSD-206ENST00000497544 ZNF330Q9Y3S2 320 aaPredicted RBP25.74■■□□□ 1.71
CTSD-206ENST00000497544 CT47B1P0C2W7 299 aaPredicted RBP25.73■■□□□ 1.71
CTSD-206ENST00000497544 MYL6BP14649 208 aa25.73■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms