RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 KRT24Q2M2I5 525 aa10.32□□□□□ -0.76
USP54-215ENST00000497106 CHD1LQ86WJ1 897 aa10.32□□□□□ -0.76
USP54-215ENST00000497106 VSIG10Q8N0Z9 540 aa10.32□□□□□ -0.76
USP54-215ENST00000497106 PI4KAP1Q8N8J0 262 aa10.32□□□□□ -0.76
USP54-215ENST00000497106 BARGINQ6ZT62 677 aa10.31□□□□□ -0.76
USP54-215ENST00000497106 NKX1-1Q15270 411 aaPredicted RBP10.31□□□□□ -0.76
USP54-215ENST00000497106 LRRCC1Q9C099 1032 aa10.31□□□□□ -0.76
USP54-215ENST00000497106 PHRF1Q9P1Y6 1649 aaKnown RBP10.31□□□□□ -0.76
USP54-215ENST00000497106 CYP27B1O15528 508 aa10.31□□□□□ -0.76
USP54-215ENST00000497106 F6X3S4 739 aa10.31□□□□□ -0.76
USP54-215ENST00000497106 APBB1O00213 710 aa10.31□□□□□ -0.76
USP54-215ENST00000497106 ZBTB7BO15156 539 aaPredicted RBP10.31□□□□□ -0.76
USP54-215ENST00000497106 LRRFIP1Q32MZ4 808 aaKnown RBP10.31□□□□□ -0.76
USP54-215ENST00000497106 GTF2E1P29083 439 aaPredicted RBP10.3□□□□□ -0.76
USP54-215ENST00000497106 VPS72Q15906 364 aa10.3□□□□□ -0.76
USP54-215ENST00000497106 XAGE3Q8WTP9 111 aa10.3□□□□□ -0.76
USP54-215ENST00000497106 MYD88Q99836 296 aa10.3□□□□□ -0.76
USP54-215ENST00000497106 IFIT2P09913 472 aaKnown RBP10.3□□□□□ -0.76
USP54-215ENST00000497106 C1orf115Q9H7X2 142 aa10.3□□□□□ -0.76
USP54-215ENST00000497106 CLASRPQ8N2M8 674 aaKnown RBP10.3□□□□□ -0.76
USP54-215ENST00000497106 PLBD2Q8NHP8 589 aa10.3□□□□□ -0.76
USP54-215ENST00000497106 ZNF496Q96IT1 587 aaPredicted RBP10.3□□□□□ -0.76
USP54-215ENST00000497106 CWC25Q9NXE8 425 aaPredicted RBP10.3□□□□□ -0.76
USP54-215ENST00000497106 TSHZ2Q9NRE2 1034 aa10.3□□□□□ -0.76
USP54-215ENST00000497106 COL14A1Q05707 1796 aaKnown RBP10.3□□□□□ -0.76
USP54-215ENST00000497106 HEG1Q9ULI3 1381 aa10.3□□□□□ -0.76
USP54-215ENST00000497106 SURF6O75683 361 aaKnown RBP10.29□□□□□ -0.76
USP54-215ENST00000497106 LNPKQ9C0E8 428 aa10.29□□□□□ -0.76
USP54-215ENST00000497106 PXDNLA1KZ92 1463 aa10.29□□□□□ -0.76
USP54-215ENST00000497106 SPATA31A1Q5TZJ5 1347 aa10.29□□□□□ -0.76
USP54-215ENST00000497106 RGPD1P0DJD0 1748 aa10.29□□□□□ -0.76
USP54-215ENST00000497106 COPS6Q7L5N1 327 aa10.29□□□□□ -0.76
USP54-215ENST00000497106 MEGF6O75095 1541 aa10.29□□□□□ -0.76
USP54-215ENST00000497106 SRGAP3O43295 1099 aa10.29□□□□□ -0.76
USP54-215ENST00000497106 ZNF772Q68DY9 489 aaPredicted RBP10.29□□□□□ -0.76
USP54-215ENST00000497106 KIF1BPQ96EK5 621 aa10.29□□□□□ -0.76
USP54-215ENST00000497106 RBM19Q9Y4C8 960 aaKnown RBP10.29□□□□□ -0.76
USP54-215ENST00000497106 ROBO1Q9Y6N7 1651 aa10.28□□□□□ -0.76
USP54-215ENST00000497106 ATP8B2P98198 1209 aa10.28□□□□□ -0.76
USP54-215ENST00000497106 METTL22Q9BUU2 404 aaPredicted RBP10.28□□□□□ -0.76
USP54-215ENST00000497106 KDM2BQ8NHM5 1336 aa10.28□□□□□ -0.76
USP54-215ENST00000497106 GORABQ5T7V8 394 aa10.28□□□□□ -0.76
USP54-215ENST00000497106 SMC5Q8IY18 1101 aa10.28□□□□□ -0.76
USP54-215ENST00000497106 LMO7Q8WWI1 1683 aa10.28□□□□□ -0.76
USP54-215ENST00000497106 SPATA31A5Q5VU36 1347 aa10.28□□□□□ -0.76
USP54-215ENST00000497106 SPATA31A7Q8IWB4 1347 aa10.28□□□□□ -0.76
USP54-215ENST00000497106 GRM8O00222 908 aa10.28□□□□□ -0.76
USP54-215ENST00000497106 KIAA1211Q6ZU35 1233 aa10.28□□□□□ -0.76
USP54-215ENST00000497106 STRCP1A6NGW2 1772 aa10.28□□□□□ -0.76
USP54-215ENST00000497106 CDC45O75419 566 aa10.27□□□□□ -0.76
USP54-215ENST00000497106 PCDHB15Q9Y5E8 787 aa10.27□□□□□ -0.76
USP54-215ENST00000497106 LRRFIP2Q9Y608 721 aaKnown RBP10.27□□□□□ -0.76
USP54-215ENST00000497106 NHSL1Q5SYE7 1610 aa10.27□□□□□ -0.76
USP54-215ENST00000497106 PHLPP1O60346 1717 aa10.27□□□□□ -0.76
USP54-215ENST00000497106 ATP6V1AP38606 617 aa10.27□□□□□ -0.77
USP54-215ENST00000497106 G2E3Q7L622 706 aa10.27□□□□□ -0.77
USP54-215ENST00000497106 RUFY2Q8WXA3 655 aa10.27□□□□□ -0.77
USP54-215ENST00000497106 HSP90AA1P07900 732 aaKnown RBP10.27□□□□□ -0.77
USP54-215ENST00000497106 NUCB1Q02818 461 aa10.27□□□□□ -0.77
USP54-215ENST00000497106 FAM98CQ17RN3 349 aaKnown RBP10.27□□□□□ -0.77
USP54-215ENST00000497106 MEIS3Q99687 375 aa10.27□□□□□ -0.77
USP54-215ENST00000497106 TRIM6-TRIM34B2RNG4 842 aa10.27□□□□□ -0.77
USP54-215ENST00000497106 TMX4Q9H1E5 349 aaPredicted RBP10.27□□□□□ -0.77
USP54-215ENST00000497106 REC8O95072 547 aa10.26□□□□□ -0.77
USP54-215ENST00000497106 CEP85Q6P2H3 762 aa10.26□□□□□ -0.77
USP54-215ENST00000497106 HIP1O00291 1037 aa10.26□□□□□ -0.77
USP54-215ENST00000497106 LTBP4Q8N2S1 1624 aa10.26□□□□□ -0.77
USP54-215ENST00000497106 DCTPP1Q9H773 170 aa10.26□□□□□ -0.77
USP54-215ENST00000497106 PHAXQ9H814 394 aaKnown RBP10.26□□□□□ -0.77
USP54-215ENST00000497106 PARP4Q9UKK3 1724 aaKnown RBP10.26□□□□□ -0.77
USP54-215ENST00000497106 TNNQ9UQP3 1299 aa10.26□□□□□ -0.77
USP54-215ENST00000497106 KCNQ3O43525 872 aa10.26□□□□□ -0.77
USP54-215ENST00000497106 TNS2Q63HR2 1409 aa10.25□□□□□ -0.77
USP54-215ENST00000497106 IGHDP01880 384 aa10.25□□□□□ -0.77
USP54-215ENST00000497106 PRIM1P49642 420 aaKnown RBP10.25□□□□□ -0.77
USP54-215ENST00000497106 CCDC191Q8NCU4 936 aa10.25□□□□□ -0.77
USP54-215ENST00000497106 CAMTA1Q9Y6Y1 1673 aa10.25□□□□□ -0.77
USP54-215ENST00000497106 CCDC57Q2TAC2 916 aa10.25□□□□□ -0.77
USP54-215ENST00000497106 RTL5Q5HYW3 569 aaPredicted RBP10.25□□□□□ -0.77
USP54-215ENST00000497106 PPP1R42Q7Z4L9 355 aa10.25□□□□□ -0.77
USP54-215ENST00000497106 CNTROBQ8N137 903 aa10.25□□□□□ -0.77
USP54-215ENST00000497106 CCDC87Q9NVE4 849 aa10.25□□□□□ -0.77
USP54-215ENST00000497106 ACSBG1Q96GR2 724 aa10.24□□□□□ -0.77
USP54-215ENST00000497106 ZPR1O75312 459 aa10.24□□□□□ -0.77
USP54-215ENST00000497106 ATP10DQ9P241 1426 aa10.24□□□□□ -0.77
USP54-215ENST00000497106 ANXA1P04083 346 aa10.24□□□□□ -0.77
USP54-215ENST00000497106 SF3B2Q13435 895 aaKnown RBP10.24□□□□□ -0.77
USP54-215ENST00000497106 PARP10Q53GL7 1025 aa10.24□□□□□ -0.77
USP54-215ENST00000497106 HSCBQ8IWL3 235 aa10.23□□□□□ -0.77
USP54-215ENST00000497106 BACH2Q9BYV9 841 aa10.23□□□□□ -0.77
USP54-215ENST00000497106 ZBTB3Q9H5J0 574 aa10.23□□□□□ -0.77
USP54-215ENST00000497106 KDM6AO15550 1401 aaPredicted RBP10.23□□□□□ -0.77
USP54-215ENST00000497106 BEND3Q5T5X7 828 aa10.23□□□□□ -0.77
USP54-215ENST00000497106 AFF2P51816 1311 aa10.23□□□□□ -0.77
USP54-215ENST00000497106 DZIP3Q86Y13 1208 aaKnown RBP10.23□□□□□ -0.77
USP54-215ENST00000497106 AK7Q96M32 723 aa10.23□□□□□ -0.77
USP54-215ENST00000497106 AKAP2Q9Y2D5 859 aa10.23□□□□□ -0.77
USP54-215ENST00000497106 IL6STP40189 918 aaPredicted RBP10.22□□□□□ -0.77
USP54-215ENST00000497106 MFAP1P55081 439 aaKnown RBP10.22□□□□□ -0.77
USP54-215ENST00000497106 BMP2KLQ5H9B9 411 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms