RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 CCDC170Q8IYT3 715 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 MAD1L1Q9Y6D9 718 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 BICD2Q8TD16 824 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 A0A0B4J269 797 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 CTAGE15A4D2H0 777 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 B4DLN1 442 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 LMNAP02545 664 aaKnown RBP6.73□□□□□ -1.33
USF3-204ENST00000496826 CTNNA2P26232 953 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 MRPL12P52815 198 aaKnown RBP6.73□□□□□ -1.33
USF3-204ENST00000496826 TUBB3Q13509 450 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 USP25Q9UHP3 1055 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 PSMC4P43686 418 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 MCTP1Q6DN14 999 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 ZCRB1Q8TBF4 217 aaKnown RBP6.72□□□□□ -1.33
USF3-204ENST00000496826 GIPC1O14908 333 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 DDX58O95786 925 aaKnown RBP6.72□□□□□ -1.33
USF3-204ENST00000496826 CTR9Q6PD62 1173 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 ST13P5Q8NFI4 369 aaPredicted RBP6.72□□□□□ -1.33
USF3-204ENST00000496826 GBP5Q96PP8 586 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 RBM27Q9P2N5 1060 aaKnown RBP6.72□□□□□ -1.33
USF3-204ENST00000496826 VPS37CA5D8V6 355 aaPredicted RBP6.72□□□□□ -1.33
USF3-204ENST00000496826 TXNDC9O14530 226 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 CTAGE8P0CG41 777 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 CTAGE4Q8IX94 777 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 SIL1Q9H173 461 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 ZNF165P49910 485 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 MAK16Q9BXY0 300 aaKnown RBP6.72□□□□□ -1.33
USF3-204ENST00000496826 WDR70Q9NW82 654 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 CTAGE9A4FU28 777 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 TRAF1Q13077 416 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 GNL3LQ9NVN8 582 aaKnown RBP6.72□□□□□ -1.33
USF3-204ENST00000496826 THEGQ9P2T0 379 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 PSMA5P28066 241 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 RUFY4Q6ZNE9 571 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 TSG101Q99816 390 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 UTP14AQ9BVJ6 771 aaKnown RBP6.72□□□□□ -1.33
USF3-204ENST00000496826 EDEM3Q9BZQ6 932 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 ROCK2O75116 1388 aaKnown RBP6.72□□□□□ -1.33
USF3-204ENST00000496826 PPP6R3Q5H9R7 873 aaPredicted RBP6.72□□□□□ -1.33
USF3-204ENST00000496826 JAKMIP1Q96N16 626 aaKnown RBP6.72□□□□□ -1.33
USF3-204ENST00000496826 ZNF396Q96N95 335 aaPredicted RBP6.72□□□□□ -1.33
USF3-204ENST00000496826 CALCOCO1Q9P1Z2 691 aa6.72□□□□□ -1.33
USF3-204ENST00000496826 ESYT2A0FGR8 921 aa6.71□□□□□ -1.33
USF3-204ENST00000496826 GKAP1Q5VSY0 366 aaPredicted RBP6.71□□□□□ -1.33
USF3-204ENST00000496826 PPP4R4Q6NUP7 873 aa6.71□□□□□ -1.33
USF3-204ENST00000496826 EVI5LQ96CN4 794 aa6.71□□□□□ -1.33
USF3-204ENST00000496826 CCDC113Q9H0I3 377 aa6.71□□□□□ -1.33
USF3-204ENST00000496826 HIP1O00291 1037 aa6.71□□□□□ -1.33
USF3-204ENST00000496826 KIF5BP33176 963 aa6.71□□□□□ -1.33
USF3-204ENST00000496826 ZSWIM4Q9H7M6 989 aa6.71□□□□□ -1.33
USF3-204ENST00000496826 SERPINI2O75830 405 aa6.71□□□□□ -1.34
USF3-204ENST00000496826 IFFO1Q0D2I5 559 aa6.71□□□□□ -1.34
USF3-204ENST00000496826 TTC16Q8NEE8 873 aa6.71□□□□□ -1.34
USF3-204ENST00000496826 STAC3Q96MF2 364 aa6.71□□□□□ -1.34
USF3-204ENST00000496826 ZSCAN16Q9H4T2 348 aaPredicted RBP6.71□□□□□ -1.34
USF3-204ENST00000496826 TPCN1Q9ULQ1 816 aa6.71□□□□□ -1.34
USF3-204ENST00000496826 F8W8V4 182 aa6.71□□□□□ -1.34
USF3-204ENST00000496826 GRIN1Q05586 938 aa6.71□□□□□ -1.34
USF3-204ENST00000496826 PFDN4Q9NQP4 134 aa6.71□□□□□ -1.34
USF3-204ENST00000496826 FMNL1O95466 1100 aaPredicted RBP6.71□□□□□ -1.34
USF3-204ENST00000496826 HSPA4P34932 840 aa6.71□□□□□ -1.34
USF3-204ENST00000496826 KIF11P52732 1056 aa6.71□□□□□ -1.34
USF3-204ENST00000496826 STX1AQ16623 288 aa6.71□□□□□ -1.34
USF3-204ENST00000496826 RASAL2Q9UJF2 1139 aa6.71□□□□□ -1.34
USF3-204ENST00000496826 PNMA2Q9UL42 364 aa6.71□□□□□ -1.34
USF3-204ENST00000496826 RSF1Q96T23 1441 aaPredicted RBP6.71□□□□□ -1.34
USF3-204ENST00000496826 MIER3Q7Z3K6 550 aa6.71□□□□□ -1.34
USF3-204ENST00000496826 GOLGA8RI6L899 631 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 PRDM1O75626 825 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 KRT8P05787 483 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 XRCC6P12956 609 aaKnown RBP eCLIP6.7□□□□□ -1.34
USF3-204ENST00000496826 PIP4K2CQ8TBX8 421 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 WDR60Q8WVS4 1066 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 ZSCAN32Q9NX65 697 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 U3KPZ7 1027 aaPredicted RBP6.7□□□□□ -1.34
USF3-204ENST00000496826 CCDC160A6NGH7 325 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 DDX49Q9Y6V7 483 aaKnown RBP6.7□□□□□ -1.34
USF3-204ENST00000496826 PPP2R5DQ14738 602 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 GSDMBQ8TAX9 411 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 CRBNQ96SW2 442 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 IRX3P78415 501 aaPredicted RBP6.7□□□□□ -1.34
USF3-204ENST00000496826 FAM186BQ8IYM0 893 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 EPSTI1Q96J88 318 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 PRPF38AQ8NAV1 312 aaKnown RBP6.7□□□□□ -1.34
USF3-204ENST00000496826 VPS37AQ8NEZ2 397 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 FRAT1Q92837 279 aaPredicted RBP6.7□□□□□ -1.34
USF3-204ENST00000496826 PARVBQ9HBI1 364 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 SLC38A10Q9HBR0 1119 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 GOLGA8QA0A0J9YX86 632 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 BICDL2A1A5D9 508 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 GOLGA8OA6NCC3 632 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 GOLGA8NF8WBI6 632 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 IPO5O00410 1097 aaKnown RBP6.7□□□□□ -1.34
USF3-204ENST00000496826 KINO60870 393 aaKnown RBP6.7□□□□□ -1.34
USF3-204ENST00000496826 IVLP07476 585 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 RBM10P98175 930 aaKnown RBP6.7□□□□□ -1.34
USF3-204ENST00000496826 CPLX4Q7Z7G2 160 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 RAB34Q9BZG1 259 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 LRRFIP2Q9Y608 721 aaKnown RBP6.7□□□□□ -1.34
USF3-204ENST00000496826 GOLGA8CPA6NN73 597 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms