RNA–Protein interactions for RNA: ENST00000496711.5

GARNL3-220, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 1 (best)

Gene GARNL3, Length 1,859 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-220ENST00000496711 ANXA1P04083 346 aa16.06■□□□□ 0.16
GARNL3-220ENST00000496711 LAMB4A4D0S4 1761 aa16.06■□□□□ 0.16
GARNL3-220ENST00000496711 SPATA31A3Q5VYP0 1347 aa16.06■□□□□ 0.16
GARNL3-220ENST00000496711 POLA2Q14181 598 aa16.05■□□□□ 0.16
GARNL3-220ENST00000496711 USP26Q9BXU7 913 aa16.05■□□□□ 0.16
GARNL3-220ENST00000496711 SPG7Q9UQ90 795 aa16.05■□□□□ 0.16
GARNL3-220ENST00000496711 CPDO75976 1380 aa16.05■□□□□ 0.16
GARNL3-220ENST00000496711 AOX1Q06278 1338 aa16.05■□□□□ 0.16
GARNL3-220ENST00000496711 K7ELQ4 463 aaPredicted RBP16.05■□□□□ 0.16
GARNL3-220ENST00000496711 REC8O95072 547 aa16.05■□□□□ 0.16
GARNL3-220ENST00000496711 DDIT3P35638 169 aa16.05■□□□□ 0.16
GARNL3-220ENST00000496711 RABEP1Q15276 862 aa16.05■□□□□ 0.16
GARNL3-220ENST00000496711 PPP1R42Q7Z4L9 355 aa16.05■□□□□ 0.16
GARNL3-220ENST00000496711 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.05■□□□□ 0.16
GARNL3-220ENST00000496711 RAB11FIP3O75154 756 aa16.04■□□□□ 0.16
GARNL3-220ENST00000496711 NBPF7P0C2Y1 421 aaPredicted RBP16.04■□□□□ 0.16
GARNL3-220ENST00000496711 CSB-PGBD3P0DP91 1061 aa16.04■□□□□ 0.16
GARNL3-220ENST00000496711 PHKG2P15735 406 aa16.04■□□□□ 0.16
GARNL3-220ENST00000496711 HSPA2P54652 639 aa16.04■□□□□ 0.16
GARNL3-220ENST00000496711 ERC2O15083 957 aa16.03■□□□□ 0.16
GARNL3-220ENST00000496711 ALDH1L1O75891 902 aa16.03■□□□□ 0.16
GARNL3-220ENST00000496711 CD2BP2O95400 341 aaKnown RBP16.03■□□□□ 0.16
GARNL3-220ENST00000496711 CABLES1Q8TDN4 633 aa16.03■□□□□ 0.16
GARNL3-220ENST00000496711 RBM42Q9BTD8 480 aaKnown RBP16.03■□□□□ 0.16
GARNL3-220ENST00000496711 SLC52A2Q9HAB3 445 aa16.03■□□□□ 0.16
GARNL3-220ENST00000496711 HYPKQ9NX55 129 aa16.03■□□□□ 0.16
GARNL3-220ENST00000496711 STAP2Q9UGK3 403 aa16.03■□□□□ 0.16
GARNL3-220ENST00000496711 PROSER3Q2NL68 480 aa16.03■□□□□ 0.16
GARNL3-220ENST00000496711 KSR2Q6VAB6 950 aa16.03■□□□□ 0.16
GARNL3-220ENST00000496711 CIZ1Q9ULV3 898 aaPredicted RBP16.03■□□□□ 0.16
GARNL3-220ENST00000496711 MAP3K2Q9Y2U5 619 aa16.03■□□□□ 0.16
GARNL3-220ENST00000496711 PRAMEF22A3QJZ6 481 aa16.02■□□□□ 0.16
GARNL3-220ENST00000496711 SRGAP3O43295 1099 aa16.02■□□□□ 0.16
GARNL3-220ENST00000496711 TSHZ3Q63HK5 1081 aa16.02■□□□□ 0.16
GARNL3-220ENST00000496711 IFNL2Q8IZJ0 200 aa16.02■□□□□ 0.16
GARNL3-220ENST00000496711 AFDNP55196 1824 aaKnown RBP16.01■□□□□ 0.15
GARNL3-220ENST00000496711 SURF6O75683 361 aaKnown RBP16.01■□□□□ 0.15
GARNL3-220ENST00000496711 CHRNA2Q15822 529 aa16.01■□□□□ 0.15
GARNL3-220ENST00000496711 ZNF790Q6PG37 636 aa16.01■□□□□ 0.15
GARNL3-220ENST00000496711 DDX21Q9NR30 783 aaKnown RBP eCLIP16.01■□□□□ 0.15
GARNL3-220ENST00000496711 HSP90AA1P07900 732 aaKnown RBP16.01■□□□□ 0.15
GARNL3-220ENST00000496711 GLI3P10071 1580 aa16■□□□□ 0.15
GARNL3-220ENST00000496711 DDX58O95786 925 aaKnown RBP16■□□□□ 0.15
GARNL3-220ENST00000496711 MCM4P33991 863 aa16■□□□□ 0.15
GARNL3-220ENST00000496711 MTX1Q13505 466 aa16■□□□□ 0.15
GARNL3-220ENST00000496711 HSP90AB4PQ58FF6 505 aa16■□□□□ 0.15
GARNL3-220ENST00000496711 KIF1BPQ96EK5 621 aa16■□□□□ 0.15
GARNL3-220ENST00000496711 IL1RAPL2Q9NP60 686 aa16■□□□□ 0.15
GARNL3-220ENST00000496711 HDAC5Q9UQL6 1122 aa16■□□□□ 0.15
GARNL3-220ENST00000496711 ARFGEF2Q9Y6D5 1785 aa16■□□□□ 0.15
GARNL3-220ENST00000496711 BRINP3Q76B58 766 aa15.99■□□□□ 0.15
GARNL3-220ENST00000496711 RHPN1Q8TCX5 695 aa15.99■□□□□ 0.15
GARNL3-220ENST00000496711 TRIM6-TRIM34B2RNG4 842 aa15.99■□□□□ 0.15
GARNL3-220ENST00000496711 DCAF5Q96JK2 942 aa15.99■□□□□ 0.15
GARNL3-220ENST00000496711 ESYT1Q9BSJ8 1104 aa15.99■□□□□ 0.15
GARNL3-220ENST00000496711 C9orf78Q9NZ63 289 aaPredicted RBP15.99■□□□□ 0.15
GARNL3-220ENST00000496711 UBR2Q8IWV8 1755 aa15.98■□□□□ 0.15
GARNL3-220ENST00000496711 SLC39A6Q13433 755 aa15.98■□□□□ 0.15
GARNL3-220ENST00000496711 PDIA6Q15084 440 aa15.97■□□□□ 0.15
GARNL3-220ENST00000496711 NFATC2IPQ8NCF5 419 aa15.97■□□□□ 0.15
GARNL3-220ENST00000496711 LINS1Q8NG48 757 aa15.97■□□□□ 0.15
GARNL3-220ENST00000496711 RILPL2Q969X0 211 aa15.97■□□□□ 0.15
GARNL3-220ENST00000496711 SHANK3Q9BYB0 1731 aa15.97■□□□□ 0.15
GARNL3-220ENST00000496711 PAPPAQ13219 1627 aa15.97■□□□□ 0.15
GARNL3-220ENST00000496711 NHSL1Q5SYE7 1610 aa15.97■□□□□ 0.15
GARNL3-220ENST00000496711 CYP27B1O15528 508 aa15.97■□□□□ 0.15
GARNL3-220ENST00000496711 CHMLP26374 656 aa15.97■□□□□ 0.15
GARNL3-220ENST00000496711 CWF19L2Q2TBE0 894 aaKnown RBP15.97■□□□□ 0.15
GARNL3-220ENST00000496711 NUTM1Q86Y26 1132 aa15.97■□□□□ 0.15
GARNL3-220ENST00000496711 DDX11L8A8MPP1 907 aa15.96■□□□□ 0.15
GARNL3-220ENST00000496711 ST18O60284 1047 aa15.96■□□□□ 0.15
GARNL3-220ENST00000496711 RAB3GAP1Q15042 981 aa15.96■□□□□ 0.15
GARNL3-220ENST00000496711 TTC5Q8N0Z6 440 aa15.96■□□□□ 0.15
GARNL3-220ENST00000496711 UTYO14607 1347 aa15.96■□□□□ 0.15
GARNL3-220ENST00000496711 COL5A2P05997 1499 aaPredicted RBP15.95■□□□□ 0.14
GARNL3-220ENST00000496711 GRM8O00222 908 aa15.95■□□□□ 0.14
GARNL3-220ENST00000496711 AIMP1Q12904 312 aaKnown RBP15.95■□□□□ 0.14
GARNL3-220ENST00000496711 OS9Q13438 667 aaPredicted RBP15.95■□□□□ 0.14
GARNL3-220ENST00000496711 PI4K2BQ8TCG2 481 aa15.95■□□□□ 0.14
GARNL3-220ENST00000496711 ZNF496Q96IT1 587 aaPredicted RBP15.95■□□□□ 0.14
GARNL3-220ENST00000496711 FOXD4L1Q9NU39 408 aa15.95■□□□□ 0.14
GARNL3-220ENST00000496711 SOS2Q07890 1332 aaPredicted RBP15.94■□□□□ 0.14
GARNL3-220ENST00000496711 WDR17Q8IZU2 1322 aa15.94■□□□□ 0.14
GARNL3-220ENST00000496711 USP42Q9H9J4 1324 aaKnown RBP15.94■□□□□ 0.14
GARNL3-220ENST00000496711 MCCP23508 829 aa15.94■□□□□ 0.14
GARNL3-220ENST00000496711 UNC5CLQ8IV45 518 aa15.94■□□□□ 0.14
GARNL3-220ENST00000496711 TNPO1Q92973 898 aaKnown RBP15.94■□□□□ 0.14
GARNL3-220ENST00000496711 SNRPA1P09661 255 aaKnown RBP15.93■□□□□ 0.14
GARNL3-220ENST00000496711 LARP1Q6PKG0 1096 aaKnown RBP15.93■□□□□ 0.14
GARNL3-220ENST00000496711 RIC3Q7Z5B4 369 aa15.93■□□□□ 0.14
GARNL3-220ENST00000496711 FMNL2Q96PY5 1086 aa15.93■□□□□ 0.14
GARNL3-220ENST00000496711 PRDM11Q9NQV5 511 aa15.93■□□□□ 0.14
GARNL3-220ENST00000496711 TTC41PQ6P2S7 1318 aa15.93■□□□□ 0.14
GARNL3-220ENST00000496711 NEXNQ0ZGT2 675 aa15.93■□□□□ 0.14
GARNL3-220ENST00000496711 ERC1Q8IUD2 1116 aa15.93■□□□□ 0.14
GARNL3-220ENST00000496711 GBP4Q96PP9 640 aa15.93■□□□□ 0.14
GARNL3-220ENST00000496711 NUP188Q5SRE5 1749 aa15.92■□□□□ 0.14
GARNL3-220ENST00000496711 PCDH11XQ9BZA7 1347 aa15.92■□□□□ 0.14
GARNL3-220ENST00000496711 PCDH11YQ9BZA8 1340 aa15.92■□□□□ 0.14
GARNL3-220ENST00000496711 MYL6BP14649 208 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms