RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 CDC5LQ99459 802 aaKnown RBP15.38■□□□□ 0.05
PTPRF-215ENST00000496447 DHX8Q14562 1220 aaKnown RBP15.37■□□□□ 0.05
PTPRF-215ENST00000496447 PDCL2Q8N4E4 241 aa15.37■□□□□ 0.05
PTPRF-215ENST00000496447 SCLT1Q96NL6 688 aa15.37■□□□□ 0.05
PTPRF-215ENST00000496447 DHX29Q7Z478 1369 aaKnown RBP15.37■□□□□ 0.05
PTPRF-215ENST00000496447 UBAP1LF5GYI3 381 aa15.37■□□□□ 0.05
PTPRF-215ENST00000496447 CBFA2T2O43439 604 aa15.37■□□□□ 0.05
PTPRF-215ENST00000496447 TOM1O60784 492 aa15.37■□□□□ 0.05
PTPRF-215ENST00000496447 SKIDA1Q1XH10 827 aa15.37■□□□□ 0.05
PTPRF-215ENST00000496447 C14orf93Q9H972 538 aaKnown RBP15.37■□□□□ 0.05
PTPRF-215ENST00000496447 CCDC196A0A1B0GTZ2 297 aa15.37■□□□□ 0.05
PTPRF-215ENST00000496447 PPP1R42Q7Z4L9 355 aa15.37■□□□□ 0.05
PTPRF-215ENST00000496447 IQCA1Q86XH1 822 aa15.37■□□□□ 0.05
PTPRF-215ENST00000496447 MAP3K2Q9Y2U5 619 aa15.36■□□□□ 0.05
PTPRF-215ENST00000496447 RARSP54136 660 aaKnown RBP15.36■□□□□ 0.05
PTPRF-215ENST00000496447 ZNF622Q969S3 477 aaKnown RBP eCLIP15.36■□□□□ 0.05
PTPRF-215ENST00000496447 CWC25Q9NXE8 425 aaPredicted RBP15.36■□□□□ 0.05
PTPRF-215ENST00000496447 SCAF11Q99590 1463 aaKnown RBP15.36■□□□□ 0.05
PTPRF-215ENST00000496447 FLIIQ13045 1269 aa15.36■□□□□ 0.05
PTPRF-215ENST00000496447 PDIA4P13667 645 aaKnown RBP15.35■□□□□ 0.05
PTPRF-215ENST00000496447 DESP17661 470 aa15.35■□□□□ 0.05
PTPRF-215ENST00000496447 ERLIN2O94905 339 aa15.35■□□□□ 0.05
PTPRF-215ENST00000496447 CUL5Q93034 780 aa15.35■□□□□ 0.05
PTPRF-215ENST00000496447 RNF41Q9H4P4 317 aaPredicted RBP15.35■□□□□ 0.05
PTPRF-215ENST00000496447 NSD2O96028 1365 aa15.35■□□□□ 0.05
PTPRF-215ENST00000496447 ZNF213O14771 459 aa15.35■□□□□ 0.05
PTPRF-215ENST00000496447 PPP4R3AQ6IN85 833 aa15.35■□□□□ 0.05
PTPRF-215ENST00000496447 TRIM21P19474 475 aaKnown RBP15.34■□□□□ 0.05
PTPRF-215ENST00000496447 CCDC181Q5TID7 509 aa15.34■□□□□ 0.05
PTPRF-215ENST00000496447 LDHAL6AQ6ZMR3 332 aa15.34■□□□□ 0.05
PTPRF-215ENST00000496447 NUP62CLQ9H1M0 184 aa15.34■□□□□ 0.05
PTPRF-215ENST00000496447 ATP5J2-PTCD1G3V325 749 aa15.34■□□□□ 0.05
PTPRF-215ENST00000496447 MCM4P33991 863 aa15.34■□□□□ 0.05
PTPRF-215ENST00000496447 ST5P78524 1137 aa15.34■□□□□ 0.05
PTPRF-215ENST00000496447 PTPRCP08575 1304 aa15.34■□□□□ 0.05
PTPRF-215ENST00000496447 SLC12A7Q9Y666 1083 aa15.34■□□□□ 0.05
PTPRF-215ENST00000496447 SNRPA1P09661 255 aaKnown RBP15.33■□□□□ 0.05
PTPRF-215ENST00000496447 CCDC83Q8IWF9 413 aa15.33■□□□□ 0.05
PTPRF-215ENST00000496447 LDHCP07864 332 aa15.33■□□□□ 0.04
PTPRF-215ENST00000496447 H0YHG0 523 aa15.33■□□□□ 0.04
PTPRF-215ENST00000496447 PPP1R12BO60237 982 aaPredicted RBP15.33■□□□□ 0.04
PTPRF-215ENST00000496447 ZNF608Q9ULD9 1512 aaPredicted RBP15.33■□□□□ 0.04
PTPRF-215ENST00000496447 HMGB1P09429 215 aaKnown RBP15.32■□□□□ 0.04
PTPRF-215ENST00000496447 NBPF6Q5VWK0 638 aa15.32■□□□□ 0.04
PTPRF-215ENST00000496447 NBPF5PQ86XG9 351 aaPredicted RBP15.32■□□□□ 0.04
PTPRF-215ENST00000496447 NBPF4Q96M43 638 aa15.32■□□□□ 0.04
PTPRF-215ENST00000496447 FEZ1Q99689 392 aa15.32■□□□□ 0.04
PTPRF-215ENST00000496447 UPF3BQ9BZI7 483 aaKnown RBP15.32■□□□□ 0.04
PTPRF-215ENST00000496447 NPHP3Q7Z494 1330 aa15.32■□□□□ 0.04
PTPRF-215ENST00000496447 NEFHP12036 1026 aa15.32■□□□□ 0.04
PTPRF-215ENST00000496447 TTF1Q15361 905 aaPredicted RBP15.32■□□□□ 0.04
PTPRF-215ENST00000496447 NEBLO76041 1014 aa15.32■□□□□ 0.04
PTPRF-215ENST00000496447 EIF5P55010 431 aaKnown RBP15.32■□□□□ 0.04
PTPRF-215ENST00000496447 NKTRP30414 1462 aaKnown RBP15.31■□□□□ 0.04
PTPRF-215ENST00000496447 USP8P40818 1118 aa15.31■□□□□ 0.04
PTPRF-215ENST00000496447 EHMT1Q9H9B1 1298 aa15.31■□□□□ 0.04
PTPRF-215ENST00000496447 TEX14Q8IWB6 1497 aa15.31■□□□□ 0.04
PTPRF-215ENST00000496447 MYCNP04198 464 aaPredicted RBP15.31■□□□□ 0.04
PTPRF-215ENST00000496447 CCDC82Q8N4S0 544 aa15.31■□□□□ 0.04
PTPRF-215ENST00000496447 URB2Q14146 1524 aaKnown RBP15.31■□□□□ 0.04
PTPRF-215ENST00000496447 UBE3BQ7Z3V4 1068 aa15.31■□□□□ 0.04
PTPRF-215ENST00000496447 IFIT3O14879 490 aaKnown RBP15.31■□□□□ 0.04
PTPRF-215ENST00000496447 FERMT3Q86UX7 667 aa15.31■□□□□ 0.04
PTPRF-215ENST00000496447 ZCRB1Q8TBF4 217 aaKnown RBP15.31■□□□□ 0.04
PTPRF-215ENST00000496447 KDM5BQ9UGL1 1544 aa15.3■□□□□ 0.04
PTPRF-215ENST00000496447 BAG3O95817 575 aa15.3■□□□□ 0.04
PTPRF-215ENST00000496447 CIZ1Q9ULV3 898 aaPredicted RBP15.3■□□□□ 0.04
PTPRF-215ENST00000496447 SMTNL1A8MU46 457 aa15.3■□□□□ 0.04
PTPRF-215ENST00000496447 RAB34Q9BZG1 259 aa15.3■□□□□ 0.04
PTPRF-215ENST00000496447 PIK3R4Q99570 1358 aa15.3■□□□□ 0.04
PTPRF-215ENST00000496447 SPTY2D1Q68D10 685 aaPredicted RBP15.3■□□□□ 0.04
PTPRF-215ENST00000496447 CATIPQ7Z7H3 387 aa15.3■□□□□ 0.04
PTPRF-215ENST00000496447 C8orf76Q96K31 380 aa15.3■□□□□ 0.04
PTPRF-215ENST00000496447 DNAI2Q9GZS0 605 aa15.3■□□□□ 0.04
PTPRF-215ENST00000496447 CALCOCO1Q9P1Z2 691 aa15.3■□□□□ 0.04
PTPRF-215ENST00000496447 C11orf95C9JLR9 678 aaPredicted RBP15.3■□□□□ 0.04
PTPRF-215ENST00000496447 CCDC112Q8NEF3 446 aa15.3■□□□□ 0.04
PTPRF-215ENST00000496447 ACSBG1Q96GR2 724 aa15.3■□□□□ 0.04
PTPRF-215ENST00000496447 C8orf37Q96NL8 207 aa15.3■□□□□ 0.04
PTPRF-215ENST00000496447 PHAXQ9H814 394 aaKnown RBP15.3■□□□□ 0.04
PTPRF-215ENST00000496447 GOLGA8AA7E2F4 631 aa15.29■□□□□ 0.04
PTPRF-215ENST00000496447 GOLGA8BA8MQT2 603 aa15.29■□□□□ 0.04
PTPRF-215ENST00000496447 POTEJP0CG39 1038 aa15.29■□□□□ 0.04
PTPRF-215ENST00000496447 CABP5Q9NP86 173 aa15.29■□□□□ 0.04
PTPRF-215ENST00000496447 GOLIM4O00461 696 aa15.29■□□□□ 0.04
PTPRF-215ENST00000496447 TMEM266Q2M3C6 531 aa15.29■□□□□ 0.04
PTPRF-215ENST00000496447 PRDM10Q9NQV6 1147 aa15.29■□□□□ 0.04
PTPRF-215ENST00000496447 TTC21AQ8NDW8 1320 aa15.29■□□□□ 0.04
PTPRF-215ENST00000496447 PI4KAP2A4QPH2 592 aa15.29■□□□□ 0.04
PTPRF-215ENST00000496447 SSRP1Q08945 709 aaKnown RBP15.29■□□□□ 0.04
PTPRF-215ENST00000496447 CCDC152Q4G0S7 254 aa15.29■□□□□ 0.04
PTPRF-215ENST00000496447 PI4KAP1Q8N8J0 262 aa15.29■□□□□ 0.04
PTPRF-215ENST00000496447 ANKRD36BQ8N2N9 1353 aa15.29■□□□□ 0.04
PTPRF-215ENST00000496447 CCDC194A0A1B0GVG4 234 aa15.28■□□□□ 0.04
PTPRF-215ENST00000496447 HLA-DOAP06340 250 aa15.28■□□□□ 0.04
PTPRF-215ENST00000496447 FAM83GA6ND36 823 aa15.28■□□□□ 0.04
PTPRF-215ENST00000496447 MYO1BO43795 1136 aa15.28■□□□□ 0.04
PTPRF-215ENST00000496447 ATP6V1AP38606 617 aa15.28■□□□□ 0.04
PTPRF-215ENST00000496447 EVI5LQ96CN4 794 aa15.28■□□□□ 0.04
PTPRF-215ENST00000496447 UHRF1BP1LA0JNW5 1464 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms