RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-221ENST00000495755 SIPA1L3O60292 1781 aaPredicted RBP9.62□□□□□ -0.87
VPS52-221ENST00000495755 HEG1Q9ULI3 1381 aa9.62□□□□□ -0.87
VPS52-221ENST00000495755 BTBD11A6QL63 1104 aa9.61□□□□□ -0.87
VPS52-221ENST00000495755 ZPR1O75312 459 aa9.61□□□□□ -0.87
VPS52-221ENST00000495755 EIF5P55010 431 aaKnown RBP9.61□□□□□ -0.87
VPS52-221ENST00000495755 DDX10Q13206 875 aaKnown RBP9.61□□□□□ -0.87
VPS52-221ENST00000495755 RALBP1Q15311 655 aa9.61□□□□□ -0.87
VPS52-221ENST00000495755 FMNL2Q96PY5 1086 aa9.61□□□□□ -0.87
VPS52-221ENST00000495755 PLEKHF1Q96S99 279 aa9.61□□□□□ -0.87
VPS52-221ENST00000495755 KIF13BQ9NQT8 1826 aa9.61□□□□□ -0.87
VPS52-221ENST00000495755 PXDNLA1KZ92 1463 aa9.6□□□□□ -0.87
VPS52-221ENST00000495755 A0A0G2JLW4 131 aa9.6□□□□□ -0.87
VPS52-221ENST00000495755 POLRMTO00411 1230 aaKnown RBP9.6□□□□□ -0.87
VPS52-221ENST00000495755 KCNA3P22001 575 aa9.6□□□□□ -0.87
VPS52-221ENST00000495755 CANXP27824 592 aaKnown RBP9.6□□□□□ -0.87
VPS52-221ENST00000495755 DCTN1Q14203 1278 aa9.6□□□□□ -0.87
VPS52-221ENST00000495755 RTF1Q92541 710 aaKnown RBP9.6□□□□□ -0.87
VPS52-221ENST00000495755 BCL2L12Q9HB09 334 aa9.6□□□□□ -0.87
VPS52-221ENST00000495755 COL15A1P39059 1388 aa9.6□□□□□ -0.87
VPS52-221ENST00000495755 KIAA1551Q9HCM1 1747 aa9.59□□□□□ -0.87
VPS52-221ENST00000495755 DPEP1P16444 411 aa9.59□□□□□ -0.87
VPS52-221ENST00000495755 NFIXQ14938 502 aa9.59□□□□□ -0.87
VPS52-221ENST00000495755 WWC3Q9ULE0 1092 aa9.59□□□□□ -0.87
VPS52-221ENST00000495755 A0A087WZG4 1122 aa9.58□□□□□ -0.88
VPS52-221ENST00000495755 A1BGP04217 495 aa9.58□□□□□ -0.88
VPS52-221ENST00000495755 IL6STP40189 918 aaPredicted RBP9.58□□□□□ -0.88
VPS52-221ENST00000495755 TAF7Q15545 349 aaPredicted RBP9.58□□□□□ -0.88
VPS52-221ENST00000495755 USP16Q9Y5T5 823 aa9.58□□□□□ -0.88
VPS52-221ENST00000495755 PRAMEF22A3QJZ6 481 aa9.57□□□□□ -0.88
VPS52-221ENST00000495755 NEFMP07197 916 aa9.57□□□□□ -0.88
VPS52-221ENST00000495755 SNRPA1P09661 255 aaKnown RBP9.57□□□□□ -0.88
VPS52-221ENST00000495755 NFE2L2Q16236 605 aa9.57□□□□□ -0.88
VPS52-221ENST00000495755 PNNQ9H307 717 aaKnown RBP9.57□□□□□ -0.88
VPS52-221ENST00000495755 N4BP2Q86UW6 1770 aaPredicted RBP9.56□□□□□ -0.88
VPS52-221ENST00000495755 SERPINB2P05120 415 aa9.56□□□□□ -0.88
VPS52-221ENST00000495755 MIS18AQ9NYP9 233 aa9.56□□□□□ -0.88
VPS52-221ENST00000495755 TBC1D2BQ9UPU7 963 aa9.56□□□□□ -0.88
VPS52-221ENST00000495755 BCS1LQ9Y276 419 aa9.56□□□□□ -0.88
VPS52-221ENST00000495755 MYBBP1AQ9BQG0 1328 aaKnown RBP9.56□□□□□ -0.88
VPS52-221ENST00000495755 CEP350Q5VT06 3117 aa9.55□□□□□ -0.88
VPS52-221ENST00000495755 ADCY9O60503 1353 aa9.55□□□□□ -0.88
VPS52-221ENST00000495755 CAMTA2O94983 1202 aa9.55□□□□□ -0.88
VPS52-221ENST00000495755 CHRNA5P30532 468 aa9.55□□□□□ -0.88
VPS52-221ENST00000495755 TBC1D9BQ66K14 1250 aa9.55□□□□□ -0.88
VPS52-221ENST00000495755 PNISRQ8TF01 805 aaKnown RBP9.55□□□□□ -0.88
VPS52-221ENST00000495755 THUMPD2Q9BTF0 503 aaKnown RBP9.55□□□□□ -0.88
VPS52-221ENST00000495755 PIM2Q9P1W9 311 aa9.55□□□□□ -0.88
VPS52-221ENST00000495755 ATP10DQ9P241 1426 aa9.55□□□□□ -0.88
VPS52-221ENST00000495755 MAPK8IP3Q9UPT6 1336 aa9.55□□□□□ -0.88
VPS52-221ENST00000495755 NRXN2Q9P2S2 1712 aa9.54□□□□□ -0.88
VPS52-221ENST00000495755 NBPF26B4DH59 902 aa9.54□□□□□ -0.88
VPS52-221ENST00000495755 DALRD3Q5D0E6 543 aaKnown RBP9.54□□□□□ -0.88
VPS52-221ENST00000495755 NBPF10Q6P3W6 841 aaKnown RBP9.54□□□□□ -0.88
VPS52-221ENST00000495755 BICDL1Q6ZP65 573 aa9.54□□□□□ -0.88
VPS52-221ENST00000495755 ARHGAP27Q6ZUM4 889 aa9.54□□□□□ -0.88
VPS52-221ENST00000495755 NBPF15Q8N660 670 aa9.54□□□□□ -0.88
VPS52-221ENST00000495755 ZNF330Q9Y3S2 320 aaPredicted RBP9.54□□□□□ -0.88
VPS52-221ENST00000495755 BRCA1P38398 1863 aaKnown RBP9.53□□□□□ -0.88
VPS52-221ENST00000495755 GIGYF1O75420 1035 aaPredicted RBP9.53□□□□□ -0.88
VPS52-221ENST00000495755 PIP4K2AP48426 406 aaPredicted RBP9.53□□□□□ -0.88
VPS52-221ENST00000495755 EIF4A1P60842 406 aaKnown RBP9.53□□□□□ -0.88
VPS52-221ENST00000495755 NPM2Q86SE8 214 aaKnown RBP9.53□□□□□ -0.88
VPS52-221ENST00000495755 DZIP3Q86Y13 1208 aaKnown RBP9.53□□□□□ -0.88
VPS52-221ENST00000495755 AFDNP55196 1824 aaKnown RBP9.53□□□□□ -0.88
VPS52-221ENST00000495755 DLG5Q8TDM6 1919 aa9.52□□□□□ -0.88
VPS52-221ENST00000495755 RGL2O15211 777 aa9.52□□□□□ -0.89
VPS52-221ENST00000495755 TMPOP42166 694 aaKnown RBP9.52□□□□□ -0.89
VPS52-221ENST00000495755 RIPK4P57078 832 aa9.52□□□□□ -0.89
VPS52-221ENST00000495755 C1QTNF8P60827 252 aa9.52□□□□□ -0.89
VPS52-221ENST00000495755 CLEC4GQ6UXB4 293 aa9.52□□□□□ -0.89
VPS52-221ENST00000495755 SETDB2Q96T68 719 aa9.52□□□□□ -0.89
VPS52-221ENST00000495755 PRKRIP1Q9H875 184 aaPredicted RBP9.52□□□□□ -0.89
VPS52-221ENST00000495755 SCN7AQ01118 1682 aa9.51□□□□□ -0.89
VPS52-221ENST00000495755 CARMIL3Q8ND23 1372 aa9.51□□□□□ -0.89
VPS52-221ENST00000495755 PRR5LQ6MZQ0 368 aa9.51□□□□□ -0.89
VPS52-221ENST00000495755 C2CD5Q86YS7 1000 aa9.51□□□□□ -0.89
VPS52-221ENST00000495755 BRIP1Q9BX63 1249 aa9.51□□□□□ -0.89
VPS52-221ENST00000495755 GPBP1L1Q9HC44 474 aaPredicted RBP9.51□□□□□ -0.89
VPS52-221ENST00000495755 BABAM1Q9NWV8 329 aa9.51□□□□□ -0.89
VPS52-221ENST00000495755 KDM3BQ7LBC6 1761 aa9.5□□□□□ -0.89
VPS52-221ENST00000495755 ARFGEF1Q9Y6D6 1849 aa9.5□□□□□ -0.89
VPS52-221ENST00000495755 H0YIN7 160 aa9.5□□□□□ -0.89
VPS52-221ENST00000495755 LMOD3Q0VAK6 560 aa9.5□□□□□ -0.89
VPS52-221ENST00000495755 CCDC146Q8IYE0 955 aa9.5□□□□□ -0.89
VPS52-221ENST00000495755 CCDC24Q8N4L8 307 aa9.5□□□□□ -0.89
VPS52-221ENST00000495755 TTLL6Q8N841 843 aa9.5□□□□□ -0.89
VPS52-221ENST00000495755 RUNDC1Q96C34 613 aa9.5□□□□□ -0.89
VPS52-221ENST00000495755 ADAMTS8Q9UP79 889 aa9.5□□□□□ -0.89
VPS52-221ENST00000495755 PDZRN3Q9UPQ7 1066 aa9.5□□□□□ -0.89
VPS52-221ENST00000495755 PDE6BP35913 854 aa9.49□□□□□ -0.89
VPS52-221ENST00000495755 ZEB1P37275 1124 aaPredicted RBP9.49□□□□□ -0.89
VPS52-221ENST00000495755 WDR43Q15061 677 aaKnown RBP eCLIP9.49□□□□□ -0.89
VPS52-221ENST00000495755 HLFQ16534 295 aa9.49□□□□□ -0.89
VPS52-221ENST00000495755 C9orf131Q5VYM1 1079 aa9.49□□□□□ -0.89
VPS52-221ENST00000495755 CNBD1Q8NA66 436 aa9.49□□□□□ -0.89
VPS52-221ENST00000495755 ZNF526Q8TF50 670 aaPredicted RBP9.49□□□□□ -0.89
VPS52-221ENST00000495755 TSPYL4Q9UJ04 414 aa9.49□□□□□ -0.89
VPS52-221ENST00000495755 TRIM35Q9UPQ4 493 aa9.49□□□□□ -0.89
VPS52-221ENST00000495755 ZNF652Q9Y2D9 606 aa9.49□□□□□ -0.89
VPS52-221ENST00000495755 RRP7AQ9Y3A4 280 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms