RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 USP17L20D6RJB6 530 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 ZBTB7BO15156 539 aaPredicted RBP10.67□□□□□ -0.7
VIM-207ENST00000495528 GNRH1P01148 92 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 SRPK2P78362 688 aaKnown RBP10.67□□□□□ -0.7
VIM-207ENST00000495528 USP17L24Q0WX57 530 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 CCDC102BQ68D86 513 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 TPCN2Q8NHX9 752 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 ATP13A2Q9NQ11 1180 aa10.67□□□□□ -0.7
VIM-207ENST00000495528 CFAP43Q8NDM7 1665 aa10.66□□□□□ -0.7
VIM-207ENST00000495528 CTTNBP2Q8WZ74 1663 aa10.66□□□□□ -0.7
VIM-207ENST00000495528 RAPGEF3O95398 923 aa10.66□□□□□ -0.7
VIM-207ENST00000495528 GDF10P55107 478 aa10.66□□□□□ -0.7
VIM-207ENST00000495528 INSM2Q96T92 566 aaPredicted RBP10.66□□□□□ -0.7
VIM-207ENST00000495528 ETNK1Q9HBU6 452 aa10.66□□□□□ -0.7
VIM-207ENST00000495528 ARAP3Q8WWN8 1544 aa10.65□□□□□ -0.7
VIM-207ENST00000495528 SCNN1DP51172 638 aa10.65□□□□□ -0.7
VIM-207ENST00000495528 PTK7Q13308 1070 aa10.65□□□□□ -0.7
VIM-207ENST00000495528 LARGE2Q8N3Y3 721 aa10.65□□□□□ -0.7
VIM-207ENST00000495528 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.65□□□□□ -0.7
VIM-207ENST00000495528 ZFP42Q96MM3 310 aa10.65□□□□□ -0.7
VIM-207ENST00000495528 POLMQ9NP87 494 aaPredicted RBP10.65□□□□□ -0.7
VIM-207ENST00000495528 SERTAD1Q9UHV2 236 aa10.65□□□□□ -0.7
VIM-207ENST00000495528 FAM196BA6NMK8 535 aa10.64□□□□□ -0.71
VIM-207ENST00000495528 IL2RAP01589 272 aa10.64□□□□□ -0.71
VIM-207ENST00000495528 NLRP3Q96P20 1036 aa10.64□□□□□ -0.71
VIM-207ENST00000495528 RBM19Q9Y4C8 960 aaKnown RBP10.64□□□□□ -0.71
VIM-207ENST00000495528 SFI1A8K8P3 1242 aa10.63□□□□□ -0.71
VIM-207ENST00000495528 TMEM229AB2RXF0 380 aa10.63□□□□□ -0.71
VIM-207ENST00000495528 SPINT1O43278 529 aa10.63□□□□□ -0.71
VIM-207ENST00000495528 DPYDQ12882 1025 aa10.63□□□□□ -0.71
VIM-207ENST00000495528 ESCO1Q5FWF5 840 aa10.63□□□□□ -0.71
VIM-207ENST00000495528 CNKSR1Q969H4 720 aa10.63□□□□□ -0.71
VIM-207ENST00000495528 NOVA2Q9UNW9 492 aaKnown RBP10.63□□□□□ -0.71
VIM-207ENST00000495528 PHLDB1Q86UU1 1377 aa10.63□□□□□ -0.71
VIM-207ENST00000495528 CTSOP43234 321 aaPredicted RBP10.62□□□□□ -0.71
VIM-207ENST00000495528 RANGAP1P46060 587 aaPredicted RBP10.62□□□□□ -0.71
VIM-207ENST00000495528 ANKMY2Q8IV38 441 aa10.62□□□□□ -0.71
VIM-207ENST00000495528 KIF21BO75037 1637 aa10.62□□□□□ -0.71
VIM-207ENST00000495528 ACIN1Q9UKV3 1341 aaKnown RBP10.61□□□□□ -0.71
VIM-207ENST00000495528 LGR5O75473 907 aa10.61□□□□□ -0.71
VIM-207ENST00000495528 PPP1R15AO75807 674 aaPredicted RBP10.61□□□□□ -0.71
VIM-207ENST00000495528 INHAP05111 366 aa10.61□□□□□ -0.71
VIM-207ENST00000495528 CLN3Q13286 438 aa10.61□□□□□ -0.71
VIM-207ENST00000495528 SIX5Q8N196 739 aa10.61□□□□□ -0.71
VIM-207ENST00000495528 ZNF358Q9NW07 568 aa10.61□□□□□ -0.71
VIM-207ENST00000495528 GMPR2Q9P2T1 348 aaKnown RBP10.61□□□□□ -0.71
VIM-207ENST00000495528 FIGNL2A6NMB9 653 aa10.6□□□□□ -0.71
VIM-207ENST00000495528 ATG7O95352 703 aa10.6□□□□□ -0.71
VIM-207ENST00000495528 XAGE2Q96GT9 111 aa10.6□□□□□ -0.71
VIM-207ENST00000495528 ESYT1Q9BSJ8 1104 aa10.6□□□□□ -0.71
VIM-207ENST00000495528 DKK1O94907 266 aa10.59□□□□□ -0.71
VIM-207ENST00000495528 FAM200AQ8TCP9 573 aa10.59□□□□□ -0.71
VIM-207ENST00000495528 STK32AQ8WU08 396 aa10.59□□□□□ -0.71
VIM-207ENST00000495528 ZMIZ1Q9ULJ6 1067 aa10.59□□□□□ -0.71
VIM-207ENST00000495528 PTPRMP28827 1452 aa10.59□□□□□ -0.71
VIM-207ENST00000495528 ARID4BQ4LE39 1312 aaPredicted RBP10.58□□□□□ -0.71
VIM-207ENST00000495528 NEO1Q92859 1461 aa10.58□□□□□ -0.72
VIM-207ENST00000495528 TTLL8A6PVC2 850 aa10.58□□□□□ -0.72
VIM-207ENST00000495528 SEC13P55735 322 aa10.58□□□□□ -0.72
VIM-207ENST00000495528 CENPCQ03188 943 aa10.58□□□□□ -0.72
VIM-207ENST00000495528 TLR1Q15399 786 aa10.58□□□□□ -0.72
VIM-207ENST00000495528 SLC27A3Q5K4L6 730 aa10.58□□□□□ -0.72
VIM-207ENST00000495528 TSEN2Q8NCE0 465 aaKnown RBP10.58□□□□□ -0.72
VIM-207ENST00000495528 ARXQ96QS3 562 aa10.58□□□□□ -0.72
VIM-207ENST00000495528 ABCA9Q8IUA7 1624 aa10.58□□□□□ -0.72
VIM-207ENST00000495528 PLEKHD1A6NEE1 506 aa10.57□□□□□ -0.72
VIM-207ENST00000495528 SOBPA7XYQ1 873 aa10.57□□□□□ -0.72
VIM-207ENST00000495528 FOXD4L5Q5VV16 416 aaPredicted RBP10.57□□□□□ -0.72
VIM-207ENST00000495528 TNS4Q8IZW8 715 aa10.57□□□□□ -0.72
VIM-207ENST00000495528 FBXO41Q8TF61 875 aa10.57□□□□□ -0.72
VIM-207ENST00000495528 SAMD9Q5K651 1589 aa10.56□□□□□ -0.72
VIM-207ENST00000495528 NUP153P49790 1475 aaKnown RBP10.56□□□□□ -0.72
VIM-207ENST00000495528 BACH1O14867 736 aa10.56□□□□□ -0.72
VIM-207ENST00000495528 HINFPQ9BQA5 517 aa10.56□□□□□ -0.72
VIM-207ENST00000495528 SOS2Q07890 1332 aaPredicted RBP10.56□□□□□ -0.72
VIM-207ENST00000495528 RAPGEF6Q8TEU7 1601 aa10.55□□□□□ -0.72
VIM-207ENST00000495528 ADAMTSL3P82987 1691 aa10.55□□□□□ -0.72
VIM-207ENST00000495528 POTECB2RU33 542 aa10.55□□□□□ -0.72
VIM-207ENST00000495528 WASLO00401 505 aaPredicted RBP10.55□□□□□ -0.72
VIM-207ENST00000495528 RNF144AP50876 292 aaPredicted RBP10.55□□□□□ -0.72
VIM-207ENST00000495528 SMTNP53814 917 aa10.55□□□□□ -0.72
VIM-207ENST00000495528 PRICKLE2Q7Z3G6 844 aa10.55□□□□□ -0.72
VIM-207ENST00000495528 RNF217Q8TC41 542 aa10.55□□□□□ -0.72
VIM-207ENST00000495528 SENP2Q9HC62 589 aa10.55□□□□□ -0.72
VIM-207ENST00000495528 HRH3Q9Y5N1 445 aa10.55□□□□□ -0.72
VIM-207ENST00000495528 FHOD3Q2V2M9 1422 aa10.55□□□□□ -0.72
VIM-207ENST00000495528 CARNS1A5YM72 827 aa10.54□□□□□ -0.72
VIM-207ENST00000495528 MAN1A2O60476 641 aa10.54□□□□□ -0.72
VIM-207ENST00000495528 CSB-PGBD3P0DP91 1061 aa10.54□□□□□ -0.72
VIM-207ENST00000495528 ELOAQ14241 798 aaKnown RBP10.54□□□□□ -0.72
VIM-207ENST00000495528 TMEM164Q5U3C3 297 aa10.54□□□□□ -0.72
VIM-207ENST00000495528 ZSCAN10Q96SZ4 725 aaPredicted RBP10.54□□□□□ -0.72
VIM-207ENST00000495528 AKNAQ7Z591 1439 aa10.53□□□□□ -0.72
VIM-207ENST00000495528 A6NJY4 79 aa10.53□□□□□ -0.72
VIM-207ENST00000495528 C11orf95C9JLR9 678 aaPredicted RBP10.53□□□□□ -0.72
VIM-207ENST00000495528 TBCELQ5QJ74 424 aa10.53□□□□□ -0.72
VIM-207ENST00000495528 TMEM214Q6NUQ4 689 aaKnown RBP10.53□□□□□ -0.72
VIM-207ENST00000495528 SLC4A9Q96Q91 983 aa10.53□□□□□ -0.72
VIM-207ENST00000495528 FHDC1Q9C0D6 1143 aaPredicted RBP10.53□□□□□ -0.72
VIM-207ENST00000495528 DNMT3LQ9UJW3 386 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms