RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 FAM200AQ8TCP9 573 aa11.58□□□□□ -0.55
SYNE1-230ENST00000495090 RILPL2Q969X0 211 aa11.58□□□□□ -0.55
SYNE1-230ENST00000495090 SPATA31D1Q6ZQQ2 1576 aa11.58□□□□□ -0.56
SYNE1-230ENST00000495090 XRN1Q8IZH2 1706 aaKnown RBP11.58□□□□□ -0.56
SYNE1-230ENST00000495090 CRYBG1Q9Y4K1 1723 aa11.58□□□□□ -0.56
SYNE1-230ENST00000495090 AP5Z1O43299 807 aa11.58□□□□□ -0.56
SYNE1-230ENST00000495090 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.58□□□□□ -0.56
SYNE1-230ENST00000495090 MPNDQ8N594 471 aa11.58□□□□□ -0.56
SYNE1-230ENST00000495090 RTF1Q92541 710 aaKnown RBP11.58□□□□□ -0.56
SYNE1-230ENST00000495090 SMC3Q9UQE7 1217 aa11.58□□□□□ -0.56
SYNE1-230ENST00000495090 SOS1Q07889 1333 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-230ENST00000495090 CPS1P31327 1500 aa11.57□□□□□ -0.56
SYNE1-230ENST00000495090 SGSM2O43147 1006 aa11.57□□□□□ -0.56
SYNE1-230ENST00000495090 U2AF2P26368 475 aaKnown RBP eCLIP11.57□□□□□ -0.56
SYNE1-230ENST00000495090 NCBP1Q09161 790 aaKnown RBP11.57□□□□□ -0.56
SYNE1-230ENST00000495090 FOXD4L6Q3SYB3 417 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-230ENST00000495090 GIMAP6Q6P9H5 292 aa11.57□□□□□ -0.56
SYNE1-230ENST00000495090 FOXD4L3Q6VB84 417 aaPredicted RBP11.57□□□□□ -0.56
SYNE1-230ENST00000495090 CGNQ9P2M7 1197 aaKnown RBP11.57□□□□□ -0.56
SYNE1-230ENST00000495090 PAXBP1Q9Y5B6 917 aa11.57□□□□□ -0.56
SYNE1-230ENST00000495090 SNX14Q9Y5W7 946 aa11.57□□□□□ -0.56
SYNE1-230ENST00000495090 ELP1O95163 1332 aa11.57□□□□□ -0.56
SYNE1-230ENST00000495090 FIBPO43427 364 aa11.56□□□□□ -0.56
SYNE1-230ENST00000495090 TSHZ3Q63HK5 1081 aa11.56□□□□□ -0.56
SYNE1-230ENST00000495090 ZSCAN31Q96LW9 406 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-230ENST00000495090 SH2B1Q9NRF2 756 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-230ENST00000495090 WASLO00401 505 aaPredicted RBP11.56□□□□□ -0.56
SYNE1-230ENST00000495090 RAB11FIP3O75154 756 aa11.56□□□□□ -0.56
SYNE1-230ENST00000495090 AK2P54819 239 aa11.56□□□□□ -0.56
SYNE1-230ENST00000495090 EIF4A2Q14240 407 aaKnown RBP11.56□□□□□ -0.56
SYNE1-230ENST00000495090 RUFY3Q7L099 469 aa11.56□□□□□ -0.56
SYNE1-230ENST00000495090 CTNNA3Q9UI47 895 aa11.56□□□□□ -0.56
SYNE1-230ENST00000495090 MTMR6Q9Y217 621 aa11.56□□□□□ -0.56
SYNE1-230ENST00000495090 FAM208AQ9UK61 1670 aaKnown RBP11.56□□□□□ -0.56
SYNE1-230ENST00000495090 ZBTB7CA1YPR0 619 aa11.55□□□□□ -0.56
SYNE1-230ENST00000495090 SPDYE4A6NLX3 237 aa11.55□□□□□ -0.56
SYNE1-230ENST00000495090 FAM177BA6PVY3 158 aa11.55□□□□□ -0.56
SYNE1-230ENST00000495090 RRS1Q15050 365 aaKnown RBP11.55□□□□□ -0.56
SYNE1-230ENST00000495090 SULT6B1Q6IMI4 303 aa11.55□□□□□ -0.56
SYNE1-230ENST00000495090 SLC4A10Q6U841 1118 aa11.55□□□□□ -0.56
SYNE1-230ENST00000495090 UNC5CLQ8IV45 518 aa11.55□□□□□ -0.56
SYNE1-230ENST00000495090 HOMEZQ8IX15 550 aa11.55□□□□□ -0.56
SYNE1-230ENST00000495090 LSG1Q9H089 658 aaKnown RBP11.55□□□□□ -0.56
SYNE1-230ENST00000495090 DDX41Q9UJV9 622 aaKnown RBP11.55□□□□□ -0.56
SYNE1-230ENST00000495090 ADGRL3Q9HAR2 1447 aa11.55□□□□□ -0.56
SYNE1-230ENST00000495090 CACNA1FO60840 1977 aa11.54□□□□□ -0.56
SYNE1-230ENST00000495090 PNMA6EA0A0J9YXQ4 647 aa11.54□□□□□ -0.56
SYNE1-230ENST00000495090 FAM193AP78312 1265 aa11.54□□□□□ -0.56
SYNE1-230ENST00000495090 MAP3K11Q16584 847 aa11.54□□□□□ -0.56
SYNE1-230ENST00000495090 VPS53Q5VIR6 699 aa11.54□□□□□ -0.56
SYNE1-230ENST00000495090 MCM10Q7L590 875 aa11.54□□□□□ -0.56
SYNE1-230ENST00000495090 G2E3Q7L622 706 aa11.54□□□□□ -0.56
SYNE1-230ENST00000495090 TM6SF1Q9BZW5 370 aa11.54□□□□□ -0.56
SYNE1-230ENST00000495090 IL25Q9H293 177 aa11.54□□□□□ -0.56
SYNE1-230ENST00000495090 CHD2O14647 1828 aaKnown RBP11.54□□□□□ -0.56
SYNE1-230ENST00000495090 F6X3S4 739 aa11.54□□□□□ -0.56
SYNE1-230ENST00000495090 PLCB2Q00722 1185 aa11.54□□□□□ -0.56
SYNE1-230ENST00000495090 RBM43Q6ZSC3 357 aaKnown RBP11.54□□□□□ -0.56
SYNE1-230ENST00000495090 KCNB2Q92953 911 aa11.54□□□□□ -0.56
SYNE1-230ENST00000495090 STK31Q9BXU1 1019 aa11.54□□□□□ -0.56
SYNE1-230ENST00000495090 HYPKQ9NX55 129 aa11.54□□□□□ -0.56
SYNE1-230ENST00000495090 MORC2Q9Y6X9 1032 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-230ENST00000495090 TTC21BQ7Z4L5 1316 aa11.54□□□□□ -0.56
SYNE1-230ENST00000495090 NALCNQ8IZF0 1738 aa11.53□□□□□ -0.56
SYNE1-230ENST00000495090 LRRC37A3O60309 1634 aa11.53□□□□□ -0.56
SYNE1-230ENST00000495090 CAVIN2O95810 425 aa11.53□□□□□ -0.56
SYNE1-230ENST00000495090 PTGS1P23219 599 aa11.53□□□□□ -0.56
SYNE1-230ENST00000495090 CDC25BP30305 580 aa11.53□□□□□ -0.56
SYNE1-230ENST00000495090 DNM1Q05193 864 aaKnown RBP11.53□□□□□ -0.56
SYNE1-230ENST00000495090 PLA2G4DQ86XP0 818 aa11.53□□□□□ -0.56
SYNE1-230ENST00000495090 CNTROBQ8N137 903 aa11.53□□□□□ -0.56
SYNE1-230ENST00000495090 PI4K2BQ8TCG2 481 aa11.53□□□□□ -0.56
SYNE1-230ENST00000495090 SSH3Q8TE77 659 aa11.53□□□□□ -0.56
SYNE1-230ENST00000495090 NUP62CLQ9H1M0 184 aa11.53□□□□□ -0.56
SYNE1-230ENST00000495090 ZRANB1Q9UGI0 708 aa11.53□□□□□ -0.56
SYNE1-230ENST00000495090 MRVI1Q9Y6F6 885 aa11.53□□□□□ -0.56
SYNE1-230ENST00000495090 USP42Q9H9J4 1324 aaKnown RBP11.53□□□□□ -0.56
SYNE1-230ENST00000495090 MAP3K5Q99683 1374 aa11.53□□□□□ -0.56
SYNE1-230ENST00000495090 GJB2P29033 226 aa11.52□□□□□ -0.56
SYNE1-230ENST00000495090 TYRO3Q06418 890 aa11.52□□□□□ -0.56
SYNE1-230ENST00000495090 CREBRFQ8IUR6 639 aa11.52□□□□□ -0.56
SYNE1-230ENST00000495090 SPC24Q8NBT2 197 aa11.52□□□□□ -0.56
SYNE1-230ENST00000495090 TDRD7Q8NHU6 1098 aaKnown RBP11.52□□□□□ -0.56
SYNE1-230ENST00000495090 SIRT1Q96EB6 747 aa11.52□□□□□ -0.56
SYNE1-230ENST00000495090 TSPYL4Q9UJ04 414 aa11.52□□□□□ -0.56
SYNE1-230ENST00000495090 CCDC61Q9Y6R9 512 aa11.52□□□□□ -0.56
SYNE1-230ENST00000495090 OVOS2A0A0J9YW53 1432 aa11.52□□□□□ -0.57
SYNE1-230ENST00000495090 OVOS2Q6IE36 1432 aa11.52□□□□□ -0.57
SYNE1-230ENST00000495090 KRT85P78386 507 aa11.52□□□□□ -0.57
SYNE1-230ENST00000495090 FLIIQ13045 1269 aa11.52□□□□□ -0.57
SYNE1-230ENST00000495090 WAPLQ7Z5K2 1190 aa11.52□□□□□ -0.57
SYNE1-230ENST00000495090 RASEFQ8IZ41 740 aa11.52□□□□□ -0.57
SYNE1-230ENST00000495090 DDX19AQ9NUU7 478 aaKnown RBP11.52□□□□□ -0.57
SYNE1-230ENST00000495090 TTC21AQ8NDW8 1320 aa11.52□□□□□ -0.57
SYNE1-230ENST00000495090 RICTORQ6R327 1708 aa11.51□□□□□ -0.57
SYNE1-230ENST00000495090 NEMFO60524 1076 aa11.51□□□□□ -0.57
SYNE1-230ENST00000495090 TNNT1P13805 278 aa11.51□□□□□ -0.57
SYNE1-230ENST00000495090 POLA2Q14181 598 aa11.51□□□□□ -0.57
SYNE1-230ENST00000495090 CCDC30Q5VVM6 783 aa11.51□□□□□ -0.57
SYNE1-230ENST00000495090 ZSCAN25Q6NSZ9 544 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms