RNA–Protein interactions for RNA: ENST00000493682.6

COL9A1-210, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 1,117 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-210ENST00000493682 NARFQ9UHQ1 456 aa23.5■■□□□ 1.35
COL9A1-210ENST00000493682 ZBTB1Q9Y2K1 713 aa23.5■■□□□ 1.35
COL9A1-210ENST00000493682 VIRMAQ69YN4 1812 aaKnown RBP23.49■■□□□ 1.35
COL9A1-210ENST00000493682 VSIG10Q8N0Z9 540 aa23.49■■□□□ 1.35
COL9A1-210ENST00000493682 COL15A1P39059 1388 aa23.49■■□□□ 1.35
COL9A1-210ENST00000493682 TOMM70O94826 608 aa23.48■■□□□ 1.35
COL9A1-210ENST00000493682 NFIXQ14938 502 aa23.48■■□□□ 1.35
COL9A1-210ENST00000493682 COL3A1P02461 1466 aaPredicted RBP23.47■■□□□ 1.35
COL9A1-210ENST00000493682 BCL2L12Q9HB09 334 aa23.46■■□□□ 1.35
COL9A1-210ENST00000493682 NPC1L1Q9UHC9 1359 aa23.46■■□□□ 1.35
COL9A1-210ENST00000493682 CNGB1Q14028 1251 aaPredicted RBP23.45■■□□□ 1.34
COL9A1-210ENST00000493682 UBR2Q8IWV8 1755 aa23.45■■□□□ 1.34
COL9A1-210ENST00000493682 U2SURPO15042 1029 aaKnown RBP23.44■■□□□ 1.34
COL9A1-210ENST00000493682 CANXP27824 592 aaKnown RBP23.44■■□□□ 1.34
COL9A1-210ENST00000493682 RNF181Q9P0P0 153 aa23.44■■□□□ 1.34
COL9A1-210ENST00000493682 APLP1P51693 650 aa23.43■■□□□ 1.34
COL9A1-210ENST00000493682 TTC5Q8N0Z6 440 aa23.43■■□□□ 1.34
COL9A1-210ENST00000493682 IL17REQ8NFR9 667 aa23.43■■□□□ 1.34
COL9A1-210ENST00000493682 NRXN2Q9P2S2 1712 aa23.42■■□□□ 1.34
COL9A1-210ENST00000493682 STARD3NLO95772 234 aa23.42■■□□□ 1.34
COL9A1-210ENST00000493682 SERPINB2P05120 415 aa23.42■■□□□ 1.34
COL9A1-210ENST00000493682 IFFO2Q5TF58 517 aa23.42■■□□□ 1.34
COL9A1-210ENST00000493682 AFDNP55196 1824 aaKnown RBP23.42■■□□□ 1.34
COL9A1-210ENST00000493682 GNAT3A8MTJ3 354 aa23.41■■□□□ 1.34
COL9A1-210ENST00000493682 EIF5P55010 431 aaKnown RBP23.41■■□□□ 1.34
COL9A1-210ENST00000493682 TEFQ10587 303 aa23.41■■□□□ 1.34
COL9A1-210ENST00000493682 GAS2L2Q8NHY3 880 aa23.41■■□□□ 1.34
COL9A1-210ENST00000493682 ZNF496Q96IT1 587 aaPredicted RBP23.41■■□□□ 1.34
COL9A1-210ENST00000493682 KDM2BQ8NHM5 1336 aa23.39■■□□□ 1.34
COL9A1-210ENST00000493682 ZNF790Q6PG37 636 aa23.39■■□□□ 1.33
COL9A1-210ENST00000493682 RBM46Q8TBY0 533 aaKnown RBP23.39■■□□□ 1.33
COL9A1-210ENST00000493682 A0A087WZG4 1122 aa23.38■■□□□ 1.33
COL9A1-210ENST00000493682 C16orf71Q8IYS4 520 aaPredicted RBP23.38■■□□□ 1.33
COL9A1-210ENST00000493682 HEG1Q9ULI3 1381 aa23.38■■□□□ 1.33
COL9A1-210ENST00000493682 SBF1O95248 1867 aa23.37■■□□□ 1.33
COL9A1-210ENST00000493682 RASSF7Q02833 373 aa23.37■■□□□ 1.33
COL9A1-210ENST00000493682 BICDL1Q6ZP65 573 aa23.37■■□□□ 1.33
COL9A1-210ENST00000493682 C2CD5Q86YS7 1000 aa23.37■■□□□ 1.33
COL9A1-210ENST00000493682 TEX13AQ9BXU3 409 aaPredicted RBP23.37■■□□□ 1.33
COL9A1-210ENST00000493682 CARMIL3Q8ND23 1372 aa23.37■■□□□ 1.33
COL9A1-210ENST00000493682 DNAJC5GQ8N7S2 189 aa23.36■■□□□ 1.33
COL9A1-210ENST00000493682 TTLL6Q8N841 843 aa23.36■■□□□ 1.33
COL9A1-210ENST00000493682 SIPA1L3O60292 1781 aaPredicted RBP23.35■■□□□ 1.33
COL9A1-210ENST00000493682 DLEC1Q9Y238 1755 aa23.35■■□□□ 1.33
COL9A1-210ENST00000493682 PHACTR3Q96KR7 559 aa23.35■■□□□ 1.33
COL9A1-210ENST00000493682 RRAGCQ9HB90 399 aa23.35■■□□□ 1.33
COL9A1-210ENST00000493682 H0YIN7 160 aa23.34■■□□□ 1.33
COL9A1-210ENST00000493682 TBC1D9BQ66K14 1250 aa23.34■■□□□ 1.33
COL9A1-210ENST00000493682 CEMIPQ8WUJ3 1361 aa23.34■■□□□ 1.33
COL9A1-210ENST00000493682 PRELPP51888 382 aa23.33■■□□□ 1.33
COL9A1-210ENST00000493682 FSTL1Q12841 308 aa23.33■■□□□ 1.33
COL9A1-210ENST00000493682 FMNL2Q96PY5 1086 aa23.33■■□□□ 1.33
COL9A1-210ENST00000493682 TBC1D2BQ9UPU7 963 aa23.33■■□□□ 1.33
COL9A1-210ENST00000493682 ZNF330Q9Y3S2 320 aaPredicted RBP23.33■■□□□ 1.33
COL9A1-210ENST00000493682 ZC3H4Q9UPT8 1303 aaKnown RBP23.33■■□□□ 1.32
COL9A1-210ENST00000493682 LMNB1P20700 586 aa23.32■■□□□ 1.32
COL9A1-210ENST00000493682 PRKAR2BP31323 418 aa23.32■■□□□ 1.32
COL9A1-210ENST00000493682 IL6STP40189 918 aaPredicted RBP23.32■■□□□ 1.32
COL9A1-210ENST00000493682 CFAP53Q96M91 514 aa23.32■■□□□ 1.32
COL9A1-210ENST00000493682 RSPH6AQ9H0K4 717 aa23.32■■□□□ 1.32
COL9A1-210ENST00000493682 KCNQ3O43525 872 aa23.31■■□□□ 1.32
COL9A1-210ENST00000493682 A1BGP04217 495 aa23.31■■□□□ 1.32
COL9A1-210ENST00000493682 POTEDQ86YR6 584 aa23.31■■□□□ 1.32
COL9A1-210ENST00000493682 SCN7AQ01118 1682 aa23.31■■□□□ 1.32
COL9A1-210ENST00000493682 TNRC6CQ9HCJ0 1690 aaKnown RBP23.31■■□□□ 1.32
COL9A1-210ENST00000493682 BTBD11A6QL63 1104 aa23.3■■□□□ 1.32
COL9A1-210ENST00000493682 BRIP1Q9BX63 1249 aa23.3■■□□□ 1.32
COL9A1-210ENST00000493682 WDR90Q96KV7 1748 aa23.28■■□□□ 1.32
COL9A1-210ENST00000493682 NFKBIEO00221 500 aa23.28■■□□□ 1.32
COL9A1-210ENST00000493682 PDE6BP35913 854 aa23.28■■□□□ 1.32
COL9A1-210ENST00000493682 PRR5LQ6MZQ0 368 aa23.28■■□□□ 1.32
COL9A1-210ENST00000493682 CCDC24Q8N4L8 307 aa23.28■■□□□ 1.32
COL9A1-210ENST00000493682 ZNF622Q969S3 477 aaKnown RBP eCLIP23.28■■□□□ 1.32
COL9A1-210ENST00000493682 ANKRD31Q8N7Z5 1873 aa23.28■■□□□ 1.32
COL9A1-210ENST00000493682 GLTPD2A6NH11 291 aa23.27■■□□□ 1.32
COL9A1-210ENST00000493682 CAMTA2O94983 1202 aa23.27■■□□□ 1.32
COL9A1-210ENST00000493682 HTRA3P83110 453 aa23.27■■□□□ 1.32
COL9A1-210ENST00000493682 PDZRN3Q9UPQ7 1066 aa23.27■■□□□ 1.32
COL9A1-210ENST00000493682 NUDCQ9Y266 331 aa23.27■■□□□ 1.32
COL9A1-210ENST00000493682 NPM2Q86SE8 214 aaKnown RBP23.26■■□□□ 1.31
COL9A1-210ENST00000493682 SETDB2Q96T68 719 aa23.26■■□□□ 1.31
COL9A1-210ENST00000493682 SMC1BQ8NDV3 1235 aa23.25■■□□□ 1.31
COL9A1-210ENST00000493682 USP16Q9Y5T5 823 aa23.25■■□□□ 1.31
COL9A1-210ENST00000493682 U2AF1L5P0DN76 240 aaPredicted RBP23.24■■□□□ 1.31
COL9A1-210ENST00000493682 PPP2R1AP30153 589 aa23.24■■□□□ 1.31
COL9A1-210ENST00000493682 U2AF1Q01081 240 aaKnown RBP eCLIP23.24■■□□□ 1.31
COL9A1-210ENST00000493682 COL11A2P13942 1736 aaPredicted RBP23.23■■□□□ 1.31
COL9A1-210ENST00000493682 C21orf2O43822 256 aa23.23■■□□□ 1.31
COL9A1-210ENST00000493682 VEGFAP15692 232 aaPredicted RBP23.23■■□□□ 1.31
COL9A1-210ENST00000493682 MCM10Q7L590 875 aa23.23■■□□□ 1.31
COL9A1-210ENST00000493682 DZIP3Q86Y13 1208 aaKnown RBP23.23■■□□□ 1.31
COL9A1-210ENST00000493682 CNBD1Q8NA66 436 aa23.23■■□□□ 1.31
COL9A1-210ENST00000493682 ZNF219Q9P2Y4 722 aaPredicted RBP23.23■■□□□ 1.31
COL9A1-210ENST00000493682 TIAM2Q8IVF5 1701 aa23.22■■□□□ 1.31
COL9A1-210ENST00000493682 PRAMEF22A3QJZ6 481 aa23.22■■□□□ 1.31
COL9A1-210ENST00000493682 PIP4K2AP48426 406 aaPredicted RBP23.22■■□□□ 1.31
COL9A1-210ENST00000493682 RTF1Q92541 710 aaKnown RBP23.22■■□□□ 1.31
COL9A1-210ENST00000493682 KLRG1Q96E93 195 aa23.22■■□□□ 1.31
COL9A1-210ENST00000493682 NPHP1O15259 732 aa23.21■■□□□ 1.31
COL9A1-210ENST00000493682 CCDC88AQ3V6T2 1871 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms