RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 VIRMAQ69YN4 1812 aaKnown RBP19.63■□□□□ 0.73
PRPF40A-211ENST00000493468 NFATC2IPQ8NCF5 419 aa19.63■□□□□ 0.73
PRPF40A-211ENST00000493468 SOS1Q07889 1333 aaPredicted RBP19.62■□□□□ 0.73
PRPF40A-211ENST00000493468 ZPR1O75312 459 aa19.62■□□□□ 0.73
PRPF40A-211ENST00000493468 MRC1P22897 1456 aa19.61■□□□□ 0.73
PRPF40A-211ENST00000493468 TNNT2P45379 298 aaPredicted RBP19.61■□□□□ 0.73
PRPF40A-211ENST00000493468 USPL1Q5W0Q7 1092 aa19.61■□□□□ 0.73
PRPF40A-211ENST00000493468 TTLL6Q8N841 843 aa19.59■□□□□ 0.73
PRPF40A-211ENST00000493468 NARFQ9UHQ1 456 aa19.59■□□□□ 0.73
PRPF40A-211ENST00000493468 COL15A1P39059 1388 aa19.58■□□□□ 0.73
PRPF40A-211ENST00000493468 FER1L6Q2WGJ9 1857 aa19.58■□□□□ 0.73
PRPF40A-211ENST00000493468 NFIXQ14938 502 aa19.58■□□□□ 0.72
PRPF40A-211ENST00000493468 AEBP1Q8IUX7 1158 aa19.58■□□□□ 0.72
PRPF40A-211ENST00000493468 DNAJC10Q8IXB1 793 aa19.57■□□□□ 0.72
PRPF40A-211ENST00000493468 UBR2Q8IWV8 1755 aa19.57■□□□□ 0.72
PRPF40A-211ENST00000493468 ANKRD31Q8N7Z5 1873 aa19.56■□□□□ 0.72
PRPF40A-211ENST00000493468 NFKBIEO00221 500 aa19.56■□□□□ 0.72
PRPF40A-211ENST00000493468 CYP19A1P11511 503 aaPredicted RBP19.56■□□□□ 0.72
PRPF40A-211ENST00000493468 POTECB2RU33 542 aa19.55■□□□□ 0.72
PRPF40A-211ENST00000493468 SLC52A2Q9HAB3 445 aa19.55■□□□□ 0.72
PRPF40A-211ENST00000493468 SERPINB2P05120 415 aa19.54■□□□□ 0.72
PRPF40A-211ENST00000493468 AKAP4Q5JQC9 854 aa19.54■□□□□ 0.72
PRPF40A-211ENST00000493468 BCL2L12Q9HB09 334 aa19.54■□□□□ 0.72
PRPF40A-211ENST00000493468 COL11A2P13942 1736 aaPredicted RBP19.54■□□□□ 0.72
PRPF40A-211ENST00000493468 SCN7AQ01118 1682 aa19.53■□□□□ 0.72
PRPF40A-211ENST00000493468 SULT6B1Q6IMI4 303 aa19.53■□□□□ 0.72
PRPF40A-211ENST00000493468 DPY19L2Q6NUT2 758 aa19.53■□□□□ 0.72
PRPF40A-211ENST00000493468 C2CD5Q86YS7 1000 aa19.53■□□□□ 0.72
PRPF40A-211ENST00000493468 CREBZFQ9NS37 354 aa19.53■□□□□ 0.72
PRPF40A-211ENST00000493468 PDZRN3Q9UPQ7 1066 aa19.53■□□□□ 0.72
PRPF40A-211ENST00000493468 CARMIL3Q8ND23 1372 aa19.53■□□□□ 0.72
PRPF40A-211ENST00000493468 H0YIN7 160 aa19.52■□□□□ 0.72
PRPF40A-211ENST00000493468 VSIG10Q8N0Z9 540 aa19.52■□□□□ 0.72
PRPF40A-211ENST00000493468 ZBTB1Q9Y2K1 713 aa19.52■□□□□ 0.72
PRPF40A-211ENST00000493468 ARFGEF2Q9Y6D5 1785 aa19.52■□□□□ 0.71
PRPF40A-211ENST00000493468 LTBP3Q9NS15 1303 aa19.5■□□□□ 0.71
PRPF40A-211ENST00000493468 IL13P35225 146 aa19.49■□□□□ 0.71
PRPF40A-211ENST00000493468 CHADLQ6NUI6 762 aa19.49■□□□□ 0.71
PRPF40A-211ENST00000493468 SCN4AP35499 1836 aa19.48■□□□□ 0.71
PRPF40A-211ENST00000493468 TIMELESSQ9UNS1 1208 aa19.48■□□□□ 0.71
PRPF40A-211ENST00000493468 RNMTO43148 476 aaKnown RBP19.47■□□□□ 0.71
PRPF40A-211ENST00000493468 ERFEQ4G0M1 354 aa19.47■□□□□ 0.71
PRPF40A-211ENST00000493468 LGR6Q9HBX8 967 aa19.47■□□□□ 0.71
PRPF40A-211ENST00000493468 CACNA1SQ13698 1873 aa19.47■□□□□ 0.71
PRPF40A-211ENST00000493468 CNTNAP1P78357 1384 aa19.46■□□□□ 0.71
PRPF40A-211ENST00000493468 PDE6BP35913 854 aa19.46■□□□□ 0.71
PRPF40A-211ENST00000493468 SLC39A6Q13433 755 aa19.46■□□□□ 0.71
PRPF40A-211ENST00000493468 MORC1Q86VD1 984 aa19.46■□□□□ 0.71
PRPF40A-211ENST00000493468 POLR3GLQ9BT43 218 aa19.46■□□□□ 0.71
PRPF40A-211ENST00000493468 BRIP1Q9BX63 1249 aa19.46■□□□□ 0.71
PRPF40A-211ENST00000493468 PANK3Q9H999 370 aa19.46■□□□□ 0.71
PRPF40A-211ENST00000493468 PRDM10Q9NQV6 1147 aa19.46■□□□□ 0.71
PRPF40A-211ENST00000493468 A0A087WZG4 1122 aa19.45■□□□□ 0.7
PRPF40A-211ENST00000493468 EIF5P55010 431 aaKnown RBP19.45■□□□□ 0.7
PRPF40A-211ENST00000493468 MKRN1Q9UHC7 482 aaKnown RBP19.45■□□□□ 0.7
PRPF40A-211ENST00000493468 SLX4Q8IY92 1834 aa19.44■□□□□ 0.7
PRPF40A-211ENST00000493468 TAOK3Q9H2K8 898 aa19.44■□□□□ 0.7
PRPF40A-211ENST00000493468 C21orf2O43822 256 aa19.43■□□□□ 0.7
PRPF40A-211ENST00000493468 ZNF622Q969S3 477 aaKnown RBP eCLIP19.43■□□□□ 0.73e-9■■□□□ 12.1
PRPF40A-211ENST00000493468 PASKQ96RG2 1323 aa19.43■□□□□ 0.7
PRPF40A-211ENST00000493468 SIPA1L3O60292 1781 aaPredicted RBP19.42■□□□□ 0.7
PRPF40A-211ENST00000493468 BCORQ6W2J9 1755 aa19.42■□□□□ 0.7
PRPF40A-211ENST00000493468 FOXN1O15353 648 aa19.42■□□□□ 0.7
PRPF40A-211ENST00000493468 STARD3NLO95772 234 aa19.42■□□□□ 0.7
PRPF40A-211ENST00000493468 CANXP27824 592 aaKnown RBP19.42■□□□□ 0.7
PRPF40A-211ENST00000493468 PRR5LQ6MZQ0 368 aa19.42■□□□□ 0.7
PRPF40A-211ENST00000493468 IQCA1LA6NCM1 817 aa19.41■□□□□ 0.7
PRPF40A-211ENST00000493468 SOGA3Q5TF21 947 aa19.41■□□□□ 0.7
PRPF40A-211ENST00000493468 TBC1D9BQ66K14 1250 aa19.41■□□□□ 0.7
PRPF40A-211ENST00000493468 BICDL1Q6ZP65 573 aa19.41■□□□□ 0.7
PRPF40A-211ENST00000493468 ADAMTSL1Q8N6G6 1762 aa19.4■□□□□ 0.7
PRPF40A-211ENST00000493468 POTEIP0CG38 1075 aa19.4■□□□□ 0.7
PRPF40A-211ENST00000493468 POTEJP0CG39 1038 aa19.4■□□□□ 0.7
PRPF40A-211ENST00000493468 LDHDQ86WU2 507 aa19.4■□□□□ 0.7
PRPF40A-211ENST00000493468 CNKSR1Q969H4 720 aa19.4■□□□□ 0.7
PRPF40A-211ENST00000493468 L3MBTL3Q96JM7 780 aaPredicted RBP19.4■□□□□ 0.7
PRPF40A-211ENST00000493468 DDNO94850 711 aaPredicted RBP19.39■□□□□ 0.69
PRPF40A-211ENST00000493468 CTCFP49711 727 aaPredicted RBP19.39■□□□□ 0.69
PRPF40A-211ENST00000493468 STYK1Q6J9G0 422 aa19.39■□□□□ 0.69
PRPF40A-211ENST00000493468 TTC5Q8N0Z6 440 aa19.38■□□□□ 0.69
PRPF40A-211ENST00000493468 TEX13AQ9BXU3 409 aaPredicted RBP19.38■□□□□ 0.69
PRPF40A-211ENST00000493468 HEG1Q9ULI3 1381 aa19.37■□□□□ 0.69
PRPF40A-211ENST00000493468 IL6STP40189 918 aaPredicted RBP19.37■□□□□ 0.69
PRPF40A-211ENST00000493468 MTHFSDQ2M296 383 aaKnown RBP19.37■□□□□ 0.69
PRPF40A-211ENST00000493468 AIDAQ96BJ3 306 aa19.37■□□□□ 0.69
PRPF40A-211ENST00000493468 ZNF219Q9P2Y4 722 aaPredicted RBP19.37■□□□□ 0.69
PRPF40A-211ENST00000493468 SRGNP10124 158 aa19.36■□□□□ 0.69
PRPF40A-211ENST00000493468 PRPF40BQ6NWY9 871 aaKnown RBP19.36■□□□□ 0.69
PRPF40A-211ENST00000493468 CNBD1Q8NA66 436 aa19.36■□□□□ 0.69
PRPF40A-211ENST00000493468 TAF1DQ9H5J8 278 aaPredicted RBP19.36■□□□□ 0.69
PRPF40A-211ENST00000493468 TMEM88BA6NKF7 163 aa19.35■□□□□ 0.69
PRPF40A-211ENST00000493468 SLC34A2O95436 690 aa19.35■□□□□ 0.69
PRPF40A-211ENST00000493468 EIF4G2P78344 907 aaKnown RBP eCLIP19.35■□□□□ 0.69
PRPF40A-211ENST00000493468 MASTLQ96GX5 879 aa19.35■□□□□ 0.69
PRPF40A-211ENST00000493468 KNSTRNQ9Y448 316 aa19.35■□□□□ 0.69
PRPF40A-211ENST00000493468 ITGBL1O95965 494 aaPredicted RBP19.34■□□□□ 0.69
PRPF40A-211ENST00000493468 HMOX1P09601 288 aa19.34■□□□□ 0.69
PRPF40A-211ENST00000493468 VEGFBP49765 207 aa19.34■□□□□ 0.69
PRPF40A-211ENST00000493468 ST5P78524 1137 aa19.34■□□□□ 0.69
PRPF40A-211ENST00000493468 ZNF496Q96IT1 587 aaPredicted RBP19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms