RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 PDE1AP54750 535 aa26.09■■□□□ 1.77
CCDC88B-208ENST00000492980 SSH3Q8TE77 659 aa26.09■■□□□ 1.77
CCDC88B-208ENST00000492980 KIF2CQ99661 725 aa26.09■■□□□ 1.77
CCDC88B-208ENST00000492980 EIF5BO60841 1220 aaKnown RBP26.08■■□□□ 1.77
CCDC88B-208ENST00000492980 ZNF790Q6PG37 636 aa26.08■■□□□ 1.77
CCDC88B-208ENST00000492980 TUBGCP6Q96RT7 1819 aa26.08■■□□□ 1.77
CCDC88B-208ENST00000492980 SOS2Q07890 1332 aaPredicted RBP26.08■■□□□ 1.77
CCDC88B-208ENST00000492980 SLAIN2Q9P270 581 aa26.08■■□□□ 1.76
CCDC88B-208ENST00000492980 NBPF7P0C2Y1 421 aaPredicted RBP26.07■■□□□ 1.76
CCDC88B-208ENST00000492980 SLC39A6Q13433 755 aa26.06■■□□□ 1.76
CCDC88B-208ENST00000492980 POLA2Q14181 598 aa26.06■■□□□ 1.76
CCDC88B-208ENST00000492980 HYPKQ9NX55 129 aa26.06■■□□□ 1.76
CCDC88B-208ENST00000492980 CYP27B1O15528 508 aa26.06■■□□□ 1.76
CCDC88B-208ENST00000492980 HSCBQ8IWL3 235 aa26.06■■□□□ 1.76
CCDC88B-208ENST00000492980 SNX21Q969T3 373 aa26.06■■□□□ 1.76
CCDC88B-208ENST00000492980 ABCA3Q99758 1704 aa26.05■■□□□ 1.76
CCDC88B-208ENST00000492980 KSR2Q6VAB6 950 aa26.05■■□□□ 1.76
CCDC88B-208ENST00000492980 PPP1R42Q7Z4L9 355 aa26.05■■□□□ 1.76
CCDC88B-208ENST00000492980 NFATC2IPQ8NCF5 419 aa26.05■■□□□ 1.76
CCDC88B-208ENST00000492980 MAP3K2Q9Y2U5 619 aa26.05■■□□□ 1.76
CCDC88B-208ENST00000492980 PARP4Q9UKK3 1724 aaKnown RBP26.04■■□□□ 1.76
CCDC88B-208ENST00000492980 DCAF5Q96JK2 942 aa26.04■■□□□ 1.76
CCDC88B-208ENST00000492980 DDX21Q9NR30 783 aaKnown RBP eCLIP26.04■■□□□ 1.76
CCDC88B-208ENST00000492980 FRAT2O75474 233 aaPredicted RBP26.03■■□□□ 1.76
CCDC88B-208ENST00000492980 PDIA6Q15084 440 aa26.03■■□□□ 1.76
CCDC88B-208ENST00000492980 ALDH1L1O75891 902 aa26.02■■□□□ 1.76
CCDC88B-208ENST00000492980 MX1P20591 662 aa26.02■■□□□ 1.76
CCDC88B-208ENST00000492980 CASC1Q6TDU7 716 aa26.02■■□□□ 1.76
CCDC88B-208ENST00000492980 PRDM11Q9NQV5 511 aa26.02■■□□□ 1.76
CCDC88B-208ENST00000492980 WDR17Q8IZU2 1322 aa26■■□□□ 1.75
CCDC88B-208ENST00000492980 HSP90AB1P08238 724 aaKnown RBP26■■□□□ 1.75
CCDC88B-208ENST00000492980 SPRYD3Q8NCJ5 442 aa26■■□□□ 1.75
CCDC88B-208ENST00000492980 SRGAP3O43295 1099 aa26■■□□□ 1.75
CCDC88B-208ENST00000492980 RAB11FIP3O75154 756 aa26■■□□□ 1.75
CCDC88B-208ENST00000492980 COL5A2P05997 1499 aaPredicted RBP25.99■■□□□ 1.75
CCDC88B-208ENST00000492980 TSHZ3Q63HK5 1081 aa25.99■■□□□ 1.75
CCDC88B-208ENST00000492980 STAP2Q9UGK3 403 aa25.99■■□□□ 1.75
CCDC88B-208ENST00000492980 ZNF496Q96IT1 587 aaPredicted RBP25.99■■□□□ 1.75
CCDC88B-208ENST00000492980 USP26Q9BXU7 913 aa25.99■■□□□ 1.75
CCDC88B-208ENST00000492980 SURF6O75683 361 aaKnown RBP25.98■■□□□ 1.75
CCDC88B-208ENST00000492980 NHSL1Q5SYE7 1610 aa25.98■■□□□ 1.75
CCDC88B-208ENST00000492980 DDX58O95786 925 aaKnown RBP25.97■■□□□ 1.75
CCDC88B-208ENST00000492980 MTX1Q13505 466 aa25.96■■□□□ 1.75
CCDC88B-208ENST00000492980 CWF19L2Q2TBE0 894 aaKnown RBP25.96■■□□□ 1.75
CCDC88B-208ENST00000492980 LINS1Q8NG48 757 aa25.96■■□□□ 1.75
CCDC88B-208ENST00000492980 AOX1Q06278 1338 aa25.96■■□□□ 1.75
CCDC88B-208ENST00000492980 GLI3P10071 1580 aa25.96■■□□□ 1.75
CCDC88B-208ENST00000492980 C9orf78Q9NZ63 289 aaPredicted RBP25.96■■□□□ 1.75
CCDC88B-208ENST00000492980 AIMP1Q12904 312 aaKnown RBP25.95■■□□□ 1.74
CCDC88B-208ENST00000492980 TTC5Q8N0Z6 440 aa25.95■■□□□ 1.74
CCDC88B-208ENST00000492980 IL1RAPL2Q9NP60 686 aa25.95■■□□□ 1.74
CCDC88B-208ENST00000492980 TOM1L2Q6ZVM7 507 aa25.94■■□□□ 1.74
CCDC88B-208ENST00000492980 RHPN1Q8TCX5 695 aa25.94■■□□□ 1.74
CCDC88B-208ENST00000492980 RBM42Q9BTD8 480 aaKnown RBP25.94■■□□□ 1.74
CCDC88B-208ENST00000492980 CD2BP2O95400 341 aaKnown RBP25.93■■□□□ 1.74
CCDC88B-208ENST00000492980 SNRPA1P09661 255 aaKnown RBP25.93■■□□□ 1.74
CCDC88B-208ENST00000492980 CABP4P57796 275 aa25.93■■□□□ 1.74
CCDC88B-208ENST00000492980 LAMB4A4D0S4 1761 aa25.93■■□□□ 1.74
CCDC88B-208ENST00000492980 ERC2O15083 957 aa25.93■■□□□ 1.74
CCDC88B-208ENST00000492980 KIF1BPQ96EK5 621 aa25.93■■□□□ 1.74
CCDC88B-208ENST00000492980 FMNL2Q96PY5 1086 aa25.93■■□□□ 1.74
CCDC88B-208ENST00000492980 UTYO14607 1347 aa25.92■■□□□ 1.74
CCDC88B-208ENST00000492980 REC8O95072 547 aa25.92■■□□□ 1.74
CCDC88B-208ENST00000492980 MYL6BP14649 208 aa25.92■■□□□ 1.74
CCDC88B-208ENST00000492980 CHMP5Q9NZZ3 219 aa25.92■■□□□ 1.74
CCDC88B-208ENST00000492980 PCDH11XQ9BZA7 1347 aa25.92■■□□□ 1.74
CCDC88B-208ENST00000492980 PCDH11YQ9BZA8 1340 aa25.92■■□□□ 1.74
CCDC88B-208ENST00000492980 HDAC5Q9UQL6 1122 aa25.91■■□□□ 1.74
CCDC88B-208ENST00000492980 HSP90AB4PQ58FF6 505 aa25.91■■□□□ 1.74
CCDC88B-208ENST00000492980 LRP10Q7Z4F1 713 aa25.91■■□□□ 1.74
CCDC88B-208ENST00000492980 XAGE3Q8WTP9 111 aa25.91■■□□□ 1.74
CCDC88B-208ENST00000492980 USP16Q9Y5T5 823 aa25.91■■□□□ 1.74
CCDC88B-208ENST00000492980 SHANK3Q9BYB0 1731 aa25.9■■□□□ 1.74
CCDC88B-208ENST00000492980 GRM8O00222 908 aa25.9■■□□□ 1.74
CCDC88B-208ENST00000492980 RIC3Q7Z5B4 369 aa25.9■■□□□ 1.74
CCDC88B-208ENST00000492980 NUTM1Q86Y26 1132 aa25.9■■□□□ 1.74
CCDC88B-208ENST00000492980 ZCRB1Q8TBF4 217 aaKnown RBP25.9■■□□□ 1.74
CCDC88B-208ENST00000492980 DDIT3P35638 169 aa25.9■■□□□ 1.74
CCDC88B-208ENST00000492980 RABEP1Q15276 862 aa25.9■■□□□ 1.74
CCDC88B-208ENST00000492980 LARP1Q6PKG0 1096 aaKnown RBP25.9■■□□□ 1.74
CCDC88B-208ENST00000492980 IGKV5-2P06315 115 aa25.89■■□□□ 1.74
CCDC88B-208ENST00000492980 CARD10Q9BWT7 1032 aa25.89■■□□□ 1.74
CCDC88B-208ENST00000492980 COPS6Q7L5N1 327 aa25.88■■□□□ 1.73
CCDC88B-208ENST00000492980 K7ELQ4 463 aaPredicted RBP25.88■■□□□ 1.73
CCDC88B-208ENST00000492980 SUCLG2Q96I99 432 aa25.88■■□□□ 1.73
CCDC88B-208ENST00000492980 TRIM6-TRIM34B2RNG4 842 aa25.87■■□□□ 1.73
CCDC88B-208ENST00000492980 KAZALD1Q96I82 304 aa25.87■■□□□ 1.73
CCDC88B-208ENST00000492980 UBR2Q8IWV8 1755 aa25.87■■□□□ 1.73
CCDC88B-208ENST00000492980 RILPL2Q969X0 211 aa25.87■■□□□ 1.73
CCDC88B-208ENST00000492980 IL2RBP14784 551 aa25.86■■□□□ 1.73
CCDC88B-208ENST00000492980 UNC5CLQ8IV45 518 aa25.86■■□□□ 1.73
CCDC88B-208ENST00000492980 ESYT1Q9BSJ8 1104 aa25.86■■□□□ 1.73
CCDC88B-208ENST00000492980 PAPPAQ13219 1627 aa25.85■■□□□ 1.73
CCDC88B-208ENST00000492980 CHMLP26374 656 aa25.85■■□□□ 1.73
CCDC88B-208ENST00000492980 PI4K2BQ8TCG2 481 aa25.85■■□□□ 1.73
CCDC88B-208ENST00000492980 METTL22Q9BUU2 404 aaPredicted RBP25.85■■□□□ 1.73
CCDC88B-208ENST00000492980 NEURL1BA8MQ27 555 aa25.85■■□□□ 1.73
CCDC88B-208ENST00000492980 NEXNQ0ZGT2 675 aa25.85■■□□□ 1.73
CCDC88B-208ENST00000492980 AK9Q5TCS8 1911 aa25.85■■□□□ 1.73
CCDC88B-208ENST00000492980 NKX1-1Q15270 411 aaPredicted RBP25.84■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms