RNA–Protein interactions for RNA: ENST00000492602.5

SEC13-219, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, human

TSL 3

Gene SEC13, Length 393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEC13-219	ENST00000492602	C2CD5	Q86YS7	1000 aa		7.77	□□□□□ -1.17
SEC13-219	ENST00000492602	RBM42	Q9BTD8	480 aa	Known RBP	7.77	□□□□□ -1.17
SEC13-219	ENST00000492602	ATG3	Q9NT62	314 aa		7.77	□□□□□ -1.17
SEC13-219	ENST00000492602	HACL1	Q9UJ83	578 aa		7.77	□□□□□ -1.17
SEC13-219	ENST00000492602	MAP3K19	Q56UN5	1328 aa		7.77	□□□□□ -1.17
SEC13-219	ENST00000492602	ITGB4	P16144	1822 aa		7.76	□□□□□ -1.17
SEC13-219	ENST00000492602		H0YIN7	160 aa		7.76	□□□□□ -1.17
SEC13-219	ENST00000492602	FBLN1	P23142	703 aa		7.76	□□□□□ -1.17
SEC13-219	ENST00000492602	TM4SF1	P30408	202 aa		7.76	□□□□□ -1.17
SEC13-219	ENST00000492602	BRPF1	P55201	1214 aa	Predicted RBP	7.76	□□□□□ -1.17
SEC13-219	ENST00000492602	CIAPIN1	Q6FI81	312 aa		7.76	□□□□□ -1.17
SEC13-219	ENST00000492602	TAOK3	Q9H2K8	898 aa		7.76	□□□□□ -1.17
SEC13-219	ENST00000492602	RGPD2	P0DJD1	1756 aa		7.76	□□□□□ -1.17
SEC13-219	ENST00000492602	CNTNAP4	Q9C0A0	1308 aa		7.76	□□□□□ -1.17
SEC13-219	ENST00000492602	USP42	Q9H9J4	1324 aa	Known RBP	7.76	□□□□□ -1.17
SEC13-219	ENST00000492602	SBNO2	Q9Y2G9	1366 aa		7.75	□□□□□ -1.17
SEC13-219	ENST00000492602	KCNA4	P22459	653 aa		7.75	□□□□□ -1.17
SEC13-219	ENST00000492602	ZNF622	Q969S3	477 aa	Known RBP eCLIP	7.75	□□□□□ -1.17
SEC13-219	ENST00000492602	SLC4A9	Q96Q91	983 aa		7.75	□□□□□ -1.17
SEC13-219	ENST00000492602	TLL2	Q9Y6L7	1015 aa		7.75	□□□□□ -1.17
SEC13-219	ENST00000492602	SMG6	Q86US8	1419 aa	Known RBP	7.75	□□□□□ -1.17
SEC13-219	ENST00000492602	SCN4A	P35499	1836 aa		7.75	□□□□□ -1.17
SEC13-219	ENST00000492602	RNF123	Q5XPI4	1314 aa		7.75	□□□□□ -1.17
SEC13-219	ENST00000492602	NKX1-1	Q15270	411 aa	Predicted RBP	7.74	□□□□□ -1.17
SEC13-219	ENST00000492602	CST9	Q5W186	159 aa		7.74	□□□□□ -1.17
SEC13-219	ENST00000492602	ZPR1	O75312	459 aa		7.73	□□□□□ -1.17
SEC13-219	ENST00000492602	USPL1	Q5W0Q7	1092 aa		7.73	□□□□□ -1.17
SEC13-219	ENST00000492602	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	7.73	□□□□□ -1.17
SEC13-219	ENST00000492602	TMC1	Q8TDI8	760 aa		7.73	□□□□□ -1.17
SEC13-219	ENST00000492602	HPS5	Q9UPZ3	1129 aa		7.73	□□□□□ -1.17
SEC13-219	ENST00000492602	DICER1	Q9UPY3	1922 aa	Known RBP	7.73	□□□□□ -1.17
SEC13-219	ENST00000492602	ZNF541	Q9H0D2	1346 aa		7.73	□□□□□ -1.17
SEC13-219	ENST00000492602	LTBP3	Q9NS15	1303 aa		7.73	□□□□□ -1.17
SEC13-219	ENST00000492602	KDR	P35968	1356 aa		7.72	□□□□□ -1.17
SEC13-219	ENST00000492602	MON2	Q7Z3U7	1717 aa		7.72	□□□□□ -1.17
SEC13-219	ENST00000492602	ADAMTSL1	Q8N6G6	1762 aa		7.72	□□□□□ -1.17
SEC13-219	ENST00000492602	TRAF5	O00463	557 aa		7.72	□□□□□ -1.17
SEC13-219	ENST00000492602	SERPINB2	P05120	415 aa		7.72	□□□□□ -1.17
SEC13-219	ENST00000492602	SAPCD2	Q86UD0	394 aa		7.72	□□□□□ -1.17
SEC13-219	ENST00000492602	SZT2	Q5T011	3432 aa		7.71	□□□□□ -1.17
SEC13-219	ENST00000492602	CRKL	P46109	303 aa	Known RBP	7.71	□□□□□ -1.18
SEC13-219	ENST00000492602	NFIX	Q14938	502 aa		7.71	□□□□□ -1.18
SEC13-219	ENST00000492602	RRS1	Q15050	365 aa	Known RBP	7.71	□□□□□ -1.18
SEC13-219	ENST00000492602	BICDL1	Q6ZP65	573 aa		7.71	□□□□□ -1.18
SEC13-219	ENST00000492602	CTU1	Q7Z7A3	348 aa	Known RBP	7.71	□□□□□ -1.18
SEC13-219	ENST00000492602	COG3	Q96JB2	828 aa		7.71	□□□□□ -1.18
SEC13-219	ENST00000492602	SPG7	Q9UQ90	795 aa		7.71	□□□□□ -1.18
SEC13-219	ENST00000492602	CELF2	O95319	508 aa	Known RBP	7.7	□□□□□ -1.18
SEC13-219	ENST00000492602	ZIC5	Q96T25	663 aa		7.7	□□□□□ -1.18
SEC13-219	ENST00000492602	PITPNM2	Q9BZ72	1349 aa		7.7	□□□□□ -1.18
SEC13-219	ENST00000492602	CARMIL3	Q8ND23	1372 aa		7.7	□□□□□ -1.18
SEC13-219	ENST00000492602	EDC4	Q6P2E9	1401 aa	Known RBP	7.69	□□□□□ -1.18
SEC13-219	ENST00000492602	DLEC1	Q9Y238	1755 aa		7.69	□□□□□ -1.18
SEC13-219	ENST00000492602	FER1L6	Q2WGJ9	1857 aa		7.69	□□□□□ -1.18
SEC13-219	ENST00000492602	CUL9	Q8IWT3	2517 aa		7.69	□□□□□ -1.18
SEC13-219	ENST00000492602	NOG	Q13253	232 aa		7.69	□□□□□ -1.18
SEC13-219	ENST00000492602	AKAP4	Q5JQC9	854 aa		7.69	□□□□□ -1.18
SEC13-219	ENST00000492602	IFNL2	Q8IZJ0	200 aa		7.69	□□□□□ -1.18
SEC13-219	ENST00000492602	HHIPL1	Q96JK4	782 aa		7.69	□□□□□ -1.18
SEC13-219	ENST00000492602	SLC12A5	Q9H2X9	1139 aa		7.69	□□□□□ -1.18
SEC13-219	ENST00000492602	COLQ	Q9Y215	455 aa	Predicted RBP	7.69	□□□□□ -1.18
SEC13-219	ENST00000492602	RTL1	A6NKG5	1358 aa		7.69	□□□□□ -1.18
SEC13-219	ENST00000492602	MYH14	Q7Z406	1995 aa	Known RBP	7.68	□□□□□ -1.18
SEC13-219	ENST00000492602	ADAMTS7	Q9UKP4	1686 aa		7.68	□□□□□ -1.18
SEC13-219	ENST00000492602	PTCD1	O75127	700 aa	Known RBP	7.68	□□□□□ -1.18
SEC13-219	ENST00000492602	TRPA1	O75762	1119 aa		7.68	□□□□□ -1.18
SEC13-219	ENST00000492602	PHKG2	P15735	406 aa		7.68	□□□□□ -1.18
SEC13-219	ENST00000492602	LMOD1	P29536	600 aa	Predicted RBP	7.68	□□□□□ -1.18
SEC13-219	ENST00000492602	PDE6B	P35913	854 aa		7.68	□□□□□ -1.18
SEC13-219	ENST00000492602	HSP90AB2P	Q58FF8	381 aa		7.68	□□□□□ -1.18
SEC13-219	ENST00000492602	SOGA3	Q5TF21	947 aa		7.68	□□□□□ -1.18
SEC13-219	ENST00000492602	GPC2	Q8N158	579 aa		7.68	□□□□□ -1.18
SEC13-219	ENST00000492602	ZNF408	Q9H9D4	720 aa		7.68	□□□□□ -1.18
SEC13-219	ENST00000492602	ZNF277	Q9NRM2	450 aa	Predicted RBP	7.68	□□□□□ -1.18
SEC13-219	ENST00000492602	SAGE1	Q9NXZ1	904 aa		7.68	□□□□□ -1.18
SEC13-219	ENST00000492602	COL5A3	P25940	1745 aa	Predicted RBP	7.67	□□□□□ -1.18
SEC13-219	ENST00000492602	AFDN	P55196	1824 aa	Known RBP	7.67	□□□□□ -1.18
SEC13-219	ENST00000492602		A0A0C4DFX4	3053 aa		7.67	□□□□□ -1.18
SEC13-219	ENST00000492602	PRPF40B	Q6NWY9	871 aa	Known RBP	7.67	□□□□□ -1.18
SEC13-219	ENST00000492602	CCDC24	Q8N4L8	307 aa		7.67	□□□□□ -1.18
SEC13-219	ENST00000492602	CNKSR1	Q969H4	720 aa		7.67	□□□□□ -1.18
SEC13-219	ENST00000492602	TERF2IP	Q9NYB0	399 aa		7.67	□□□□□ -1.18
SEC13-219	ENST00000492602	PDZRN3	Q9UPQ7	1066 aa		7.67	□□□□□ -1.18
SEC13-219	ENST00000492602	GJA3	Q9Y6H8	435 aa		7.67	□□□□□ -1.18
SEC13-219	ENST00000492602	FZD9	O00144	591 aa		7.66	□□□□□ -1.18
SEC13-219	ENST00000492602	PKN2	Q16513	984 aa	Known RBP	7.66	□□□□□ -1.18
SEC13-219	ENST00000492602	INTS5	Q6P9B9	1019 aa	Known RBP	7.66	□□□□□ -1.18
SEC13-219	ENST00000492602	SYNE4	Q8N205	404 aa		7.66	□□□□□ -1.18
SEC13-219	ENST00000492602	BRIP1	Q9BX63	1249 aa		7.66	□□□□□ -1.18
SEC13-219	ENST00000492602	RNF186	Q9NXI6	227 aa		7.66	□□□□□ -1.18
SEC13-219	ENST00000492602	NARF	Q9UHQ1	456 aa		7.66	□□□□□ -1.18
SEC13-219	ENST00000492602		A0A1W2PP64	1363 aa		7.66	□□□□□ -1.18
SEC13-219	ENST00000492602	INSR	P06213	1382 aa		7.66	□□□□□ -1.18
SEC13-219	ENST00000492602	EPS15	P42566	896 aa		7.65	□□□□□ -1.18
SEC13-219	ENST00000492602	MKI67	P46013	3256 aa	Known RBP	7.65	□□□□□ -1.18
SEC13-219	ENST00000492602	MNX1	P50219	401 aa	Predicted RBP	7.65	□□□□□ -1.18
SEC13-219	ENST00000492602	FKBP4	Q02790	459 aa	Known RBP eCLIP	7.65	□□□□□ -1.18
SEC13-219	ENST00000492602	CCDC93	Q567U6	631 aa		7.65	□□□□□ -1.18
SEC13-219	ENST00000492602	ZNF831	Q5JPB2	1677 aa		7.65	□□□□□ -1.18
SEC13-219	ENST00000492602	USP50	Q70EL3	339 aa	Predicted RBP	7.65	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms