RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 CANXP27824 592 aaKnown RBP12.02□□□□□ -0.49
HDAC3-211ENST00000491581 C1QTNF8P60827 252 aa12.02□□□□□ -0.49
HDAC3-211ENST00000491581 CCDC24Q8N4L8 307 aa12.02□□□□□ -0.49
HDAC3-211ENST00000491581 ZNF496Q96IT1 587 aaPredicted RBP12.02□□□□□ -0.49
HDAC3-211ENST00000491581 RSPH6AQ9H0K4 717 aa12.02□□□□□ -0.49
HDAC3-211ENST00000491581 BCL2L12Q9HB09 334 aa12.02□□□□□ -0.49
HDAC3-211ENST00000491581 CCDC87Q9NVE4 849 aa12.02□□□□□ -0.49
HDAC3-211ENST00000491581 BCS1LQ9Y276 419 aa12.02□□□□□ -0.49
HDAC3-211ENST00000491581 SOS1Q07889 1333 aaPredicted RBP12.02□□□□□ -0.49
HDAC3-211ENST00000491581 ADCY9O60503 1353 aa12.02□□□□□ -0.49
HDAC3-211ENST00000491581 NPC1L1Q9UHC9 1359 aa12.02□□□□□ -0.49
HDAC3-211ENST00000491581 SENP3-EIF4A1A0A087X0R7 540 aa12.01□□□□□ -0.49
HDAC3-211ENST00000491581 GRIN3BO60391 1043 aa12.01□□□□□ -0.49
HDAC3-211ENST00000491581 NLGN1Q8N2Q7 840 aa12.01□□□□□ -0.49
HDAC3-211ENST00000491581 CACNA1SQ13698 1873 aa12.01□□□□□ -0.49
HDAC3-211ENST00000491581 ANKRD31Q8N7Z5 1873 aa12.01□□□□□ -0.49
HDAC3-211ENST00000491581 CARMIL3Q8ND23 1372 aa12.01□□□□□ -0.49
HDAC3-211ENST00000491581 ARFGEF1Q9Y6D6 1849 aa12□□□□□ -0.49
HDAC3-211ENST00000491581 MCM10Q7L590 875 aa12□□□□□ -0.49
HDAC3-211ENST00000491581 PARP3Q9Y6F1 533 aa12□□□□□ -0.49
HDAC3-211ENST00000491581 COL15A1P39059 1388 aa12□□□□□ -0.49
HDAC3-211ENST00000491581 SCN7AQ01118 1682 aa12□□□□□ -0.49
HDAC3-211ENST00000491581 COL11A2P13942 1736 aaPredicted RBP12□□□□□ -0.49
HDAC3-211ENST00000491581 NRXN2Q9P2S2 1712 aa12□□□□□ -0.49
HDAC3-211ENST00000491581 POLRMTO00411 1230 aaKnown RBP11.99□□□□□ -0.49
HDAC3-211ENST00000491581 GIGYF1O75420 1035 aaPredicted RBP11.99□□□□□ -0.49
HDAC3-211ENST00000491581 TM4SF1P30408 202 aa11.99□□□□□ -0.49
HDAC3-211ENST00000491581 NFIXQ14938 502 aa11.99□□□□□ -0.49
HDAC3-211ENST00000491581 BICDL1Q6ZP65 573 aa11.99□□□□□ -0.49
HDAC3-211ENST00000491581 ZNF330Q9Y3S2 320 aaPredicted RBP11.99□□□□□ -0.49
HDAC3-211ENST00000491581 DLEC1Q9Y238 1755 aa11.98□□□□□ -0.49
HDAC3-211ENST00000491581 GNAT3A8MTJ3 354 aa11.98□□□□□ -0.49
HDAC3-211ENST00000491581 A1BGP04217 495 aa11.98□□□□□ -0.49
HDAC3-211ENST00000491581 U2AF1L5P0DN76 240 aaPredicted RBP11.98□□□□□ -0.49
HDAC3-211ENST00000491581 U2AF1Q01081 240 aaKnown RBP eCLIP11.98□□□□□ -0.49
HDAC3-211ENST00000491581 MIS18AQ9NYP9 233 aa11.98□□□□□ -0.49
HDAC3-211ENST00000491581 SBF1O95248 1867 aa11.97□□□□□ -0.49
HDAC3-211ENST00000491581 CCDC88AQ3V6T2 1871 aa11.97□□□□□ -0.49
HDAC3-211ENST00000491581 BCORQ6W2J9 1755 aa11.97□□□□□ -0.49
HDAC3-211ENST00000491581 HEG1Q9ULI3 1381 aa11.97□□□□□ -0.49
HDAC3-211ENST00000491581 FCHSD2O94868 740 aa11.97□□□□□ -0.49
HDAC3-211ENST00000491581 ZNF790Q6PG37 636 aa11.97□□□□□ -0.49
HDAC3-211ENST00000491581 ARHGAP27Q6ZUM4 889 aa11.97□□□□□ -0.49
HDAC3-211ENST00000491581 TBC1D2BQ9UPU7 963 aa11.97□□□□□ -0.49
HDAC3-211ENST00000491581 CEMIPQ8WUJ3 1361 aa11.96□□□□□ -0.49
HDAC3-211ENST00000491581 TEFQ10587 303 aa11.96□□□□□ -0.49
HDAC3-211ENST00000491581 THUMPD2Q9BTF0 503 aaKnown RBP11.96□□□□□ -0.49
HDAC3-211ENST00000491581 USP16Q9Y5T5 823 aa11.96□□□□□ -0.49
HDAC3-211ENST00000491581 ZPR1O75312 459 aa11.95□□□□□ -0.5
HDAC3-211ENST00000491581 PRELPP51888 382 aa11.95□□□□□ -0.5
HDAC3-211ENST00000491581 TGFB2P61812 414 aa11.95□□□□□ -0.5
HDAC3-211ENST00000491581 RASSF7Q02833 373 aa11.95□□□□□ -0.5
HDAC3-211ENST00000491581 TBC1D9BQ66K14 1250 aa11.95□□□□□ -0.5
HDAC3-211ENST00000491581 TTC5Q8N0Z6 440 aa11.95□□□□□ -0.5
HDAC3-211ENST00000491581 GAS2L2Q8NHY3 880 aa11.95□□□□□ -0.5
HDAC3-211ENST00000491581 NARFQ9UHQ1 456 aa11.95□□□□□ -0.5
HDAC3-211ENST00000491581 BTBD11A6QL63 1104 aa11.94□□□□□ -0.5
HDAC3-211ENST00000491581 EIF5P55010 431 aaKnown RBP11.94□□□□□ -0.5
HDAC3-211ENST00000491581 CFAP53Q96M91 514 aa11.94□□□□□ -0.5
HDAC3-211ENST00000491581 GPBP1L1Q9HC44 474 aaPredicted RBP11.94□□□□□ -0.5
HDAC3-211ENST00000491581 KDM3BQ7LBC6 1761 aa11.94□□□□□ -0.5
HDAC3-211ENST00000491581 KIF3CO14782 793 aa11.93□□□□□ -0.5
HDAC3-211ENST00000491581 SERPINB2P05120 415 aa11.93□□□□□ -0.5
HDAC3-211ENST00000491581 HMGB2P26583 209 aaKnown RBP11.93□□□□□ -0.5
HDAC3-211ENST00000491581 NMRK2Q9NPI5 230 aa11.93□□□□□ -0.5
HDAC3-211ENST00000491581 ZNF219Q9P2Y4 722 aaPredicted RBP11.93□□□□□ -0.5
HDAC3-211ENST00000491581 TIAM2Q8IVF5 1701 aa11.92□□□□□ -0.5
HDAC3-211ENST00000491581 POTEHQ6S545 545 aa11.92□□□□□ -0.5
HDAC3-211ENST00000491581 VSIG10Q8N0Z9 540 aa11.92□□□□□ -0.5
HDAC3-211ENST00000491581 LAMB4A4D0S4 1761 aa11.92□□□□□ -0.5
HDAC3-211ENST00000491581 NBPF26B4DH59 902 aa11.91□□□□□ -0.5
HDAC3-211ENST00000491581 C9orf131Q5VYM1 1079 aa11.91□□□□□ -0.5
HDAC3-211ENST00000491581 NBPF10Q6P3W6 841 aaKnown RBP11.91□□□□□ -0.5
HDAC3-211ENST00000491581 NBPF15Q8N660 670 aa11.91□□□□□ -0.5
HDAC3-211ENST00000491581 PIM2Q9P1W9 311 aa11.91□□□□□ -0.5
HDAC3-211ENST00000491581 SLX4Q8IY92 1834 aa11.9□□□□□ -0.5
HDAC3-211ENST00000491581 CAMTA2O94983 1202 aa11.9□□□□□ -0.5
HDAC3-211ENST00000491581 DALRD3Q5D0E6 543 aaKnown RBP11.9□□□□□ -0.5
HDAC3-211ENST00000491581 SLC51AQ86UW1 340 aa11.9□□□□□ -0.5
HDAC3-211ENST00000491581 C2CD5Q86YS7 1000 aa11.9□□□□□ -0.5
HDAC3-211ENST00000491581 FMNL2Q96PY5 1086 aa11.9□□□□□ -0.5
HDAC3-211ENST00000491581 PLEKHF1Q96S99 279 aa11.9□□□□□ -0.5
HDAC3-211ENST00000491581 TNRC6CQ9HCJ0 1690 aaKnown RBP11.9□□□□□ -0.5
HDAC3-211ENST00000491581 FAM177BA6PVY3 158 aa11.89□□□□□ -0.51
HDAC3-211ENST00000491581 STARD3NLO95772 234 aa11.89□□□□□ -0.51
HDAC3-211ENST00000491581 DDX10Q13206 875 aaKnown RBP11.89□□□□□ -0.51
HDAC3-211ENST00000491581 PRR5LQ6MZQ0 368 aa11.89□□□□□ -0.51
HDAC3-211ENST00000491581 NGEFQ8N5V2 710 aa11.89□□□□□ -0.51
HDAC3-211ENST00000491581 NUDCQ9Y266 331 aa11.89□□□□□ -0.51
HDAC3-211ENST00000491581 HTRA3P83110 453 aa11.88□□□□□ -0.51
HDAC3-211ENST00000491581 RNF181Q9P0P0 153 aa11.88□□□□□ -0.51
HDAC3-211ENST00000491581 IL6STP40189 918 aaPredicted RBP11.87□□□□□ -0.51
HDAC3-211ENST00000491581 HLFQ16534 295 aa11.87□□□□□ -0.51
HDAC3-211ENST00000491581 OLFM4Q6UX06 510 aa11.87□□□□□ -0.51
HDAC3-211ENST00000491581 DZIP3Q86Y13 1208 aaKnown RBP11.87□□□□□ -0.51
HDAC3-211ENST00000491581 RTF1Q92541 710 aaKnown RBP11.87□□□□□ -0.51
HDAC3-211ENST00000491581 RRP7AQ9Y3A4 280 aaKnown RBP11.87□□□□□ -0.51
HDAC3-211ENST00000491581 NUP98P52948 1817 aa11.87□□□□□ -0.51
HDAC3-211ENST00000491581 FER1L6Q2WGJ9 1857 aa11.87□□□□□ -0.51
HDAC3-211ENST00000491581 NFKBIEO00221 500 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms