RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 FMNL2Q96PY5 1086 aa33.18■■■□□ 2.9
HMGN1-217ENST00000489072 NEFMP07197 916 aa33.17■■■□□ 2.9
HMGN1-217ENST00000489072 FKBP8Q14318 412 aa33.17■■■□□ 2.9
HMGN1-217ENST00000489072 COL15A1P39059 1388 aa33.17■■■□□ 2.9
HMGN1-217ENST00000489072 STARD3NLO95772 234 aa33.16■■■□□ 2.9
HMGN1-217ENST00000489072 KIAA1551Q9HCM1 1747 aa33.14■■■□□ 2.9
HMGN1-217ENST00000489072 CANXP27824 592 aaKnown RBP33.14■■■□□ 2.9
HMGN1-217ENST00000489072 NFE2L2Q16236 605 aa33.14■■■□□ 2.9
HMGN1-217ENST00000489072 C10orf71Q711Q0 1435 aa33.13■■■□□ 2.89
HMGN1-217ENST00000489072 USPL1Q5W0Q7 1092 aa33.13■■■□□ 2.89
HMGN1-217ENST00000489072 TEX13AQ9BXU3 409 aaPredicted RBP33.13■■■□□ 2.89
HMGN1-217ENST00000489072 PNNQ9H307 717 aaKnown RBP33.12■■■□□ 2.89
HMGN1-217ENST00000489072 PARP3Q9Y6F1 533 aa33.12■■■□□ 2.89
HMGN1-217ENST00000489072 ZPR1O75312 459 aa33.11■■■□□ 2.89
HMGN1-217ENST00000489072 DDR1Q08345 913 aa33.11■■■□□ 2.89
HMGN1-217ENST00000489072 NARFQ9UHQ1 456 aa33.11■■■□□ 2.89
HMGN1-217ENST00000489072 MAPK8IP3Q9UPT6 1336 aa33.1■■■□□ 2.89
HMGN1-217ENST00000489072 EIF5P55010 431 aaKnown RBP33.1■■■□□ 2.89
HMGN1-217ENST00000489072 PRKRIP1Q9H875 184 aaPredicted RBP33.1■■■□□ 2.89
HMGN1-217ENST00000489072 N4BP2Q86UW6 1770 aaPredicted RBP33.1■■■□□ 2.89
HMGN1-217ENST00000489072 TAF7Q15545 349 aaPredicted RBP33.09■■■□□ 2.89
HMGN1-217ENST00000489072 PXDNLA1KZ92 1463 aa33.09■■■□□ 2.89
HMGN1-217ENST00000489072 WWC3Q9ULE0 1092 aa33.08■■■□□ 2.89
HMGN1-217ENST00000489072 PRAMEF22A3QJZ6 481 aa33.07■■■□□ 2.88
HMGN1-217ENST00000489072 A1BGP04217 495 aa33.07■■■□□ 2.88
HMGN1-217ENST00000489072 TM4SF1P30408 202 aa33.07■■■□□ 2.88
HMGN1-217ENST00000489072 THUMPD2Q9BTF0 503 aaKnown RBP33.07■■■□□ 2.88
HMGN1-217ENST00000489072 BCL2L12Q9HB09 334 aa33.07■■■□□ 2.88
HMGN1-217ENST00000489072 MIS18AQ9NYP9 233 aa33.07■■■□□ 2.88
HMGN1-217ENST00000489072 KDM3BQ7LBC6 1761 aa33.06■■■□□ 2.88
HMGN1-217ENST00000489072 GRIN3BO60391 1043 aa33.06■■■□□ 2.88
HMGN1-217ENST00000489072 USP16Q9Y5T5 823 aa33.06■■■□□ 2.88
HMGN1-217ENST00000489072 POLRMTO00411 1230 aaKnown RBP33.04■■■□□ 2.88
HMGN1-217ENST00000489072 AFDNP55196 1824 aaKnown RBP33.03■■■□□ 2.88
HMGN1-217ENST00000489072 SNRPA1P09661 255 aaKnown RBP33.03■■■□□ 2.88
HMGN1-217ENST00000489072 SCN7AQ01118 1682 aa33.02■■■□□ 2.88
HMGN1-217ENST00000489072 IL6STP40189 918 aaPredicted RBP33.02■■■□□ 2.88
HMGN1-217ENST00000489072 TGFB2P61812 414 aa33.02■■■□□ 2.88
HMGN1-217ENST00000489072 NFIXQ14938 502 aa33.02■■■□□ 2.88
HMGN1-217ENST00000489072 A0A087WZG4 1122 aa33.01■■■□□ 2.87
HMGN1-217ENST00000489072 A0A0G2JLW4 131 aa33.01■■■□□ 2.87
HMGN1-217ENST00000489072 ZNF330Q9Y3S2 320 aaPredicted RBP33.01■■■□□ 2.87
HMGN1-217ENST00000489072 NRXN2Q9P2S2 1712 aa32.99■■■□□ 2.87
HMGN1-217ENST00000489072 BRCA1P38398 1863 aaKnown RBP32.99■■■□□ 2.87
HMGN1-217ENST00000489072 PIP4K2AP48426 406 aaPredicted RBP32.99■■■□□ 2.87
HMGN1-217ENST00000489072 CCDC146Q8IYE0 955 aa32.99■■■□□ 2.87
HMGN1-217ENST00000489072 DPEP1P16444 411 aa32.98■■■□□ 2.87
HMGN1-217ENST00000489072 RIPK4P57078 832 aa32.98■■■□□ 2.87
HMGN1-217ENST00000489072 PNISRQ8TF01 805 aaKnown RBP32.98■■■□□ 2.87
HMGN1-217ENST00000489072 TBC1D2BQ9UPU7 963 aa32.98■■■□□ 2.87
HMGN1-217ENST00000489072 LAMB4A4D0S4 1761 aa32.98■■■□□ 2.87
HMGN1-217ENST00000489072 TMPOP42166 694 aaKnown RBP32.97■■■□□ 2.87
HMGN1-217ENST00000489072 WDR43Q15061 677 aaKnown RBP eCLIP32.97■■■□□ 2.87
HMGN1-217ENST00000489072 ZNF784Q8NCA9 323 aaPredicted RBP32.97■■■□□ 2.87
HMGN1-217ENST00000489072 ADAMTS8Q9UP79 889 aa32.95■■■□□ 2.87
HMGN1-217ENST00000489072 BCORQ6W2J9 1755 aa32.95■■■□□ 2.87
HMGN1-217ENST00000489072 RRP7AQ9Y3A4 280 aaKnown RBP32.94■■■□□ 2.86
HMGN1-217ENST00000489072 KCNA3P22001 575 aa32.93■■■□□ 2.86
HMGN1-217ENST00000489072 NBPF26B4DH59 902 aa32.92■■■□□ 2.86
HMGN1-217ENST00000489072 CAMTA2O94983 1202 aa32.92■■■□□ 2.86
HMGN1-217ENST00000489072 EIF4A1P60842 406 aaKnown RBP32.92■■■□□ 2.86
HMGN1-217ENST00000489072 TBC1D9BQ66K14 1250 aa32.92■■■□□ 2.86
HMGN1-217ENST00000489072 NBPF10Q6P3W6 841 aaKnown RBP32.92■■■□□ 2.86
HMGN1-217ENST00000489072 BICDL1Q6ZP65 573 aa32.92■■■□□ 2.86
HMGN1-217ENST00000489072 NBPF15Q8N660 670 aa32.92■■■□□ 2.86
HMGN1-217ENST00000489072 RUNDC1Q96C34 613 aa32.92■■■□□ 2.86
HMGN1-217ENST00000489072 SERPINB2P05120 415 aa32.91■■■□□ 2.86
HMGN1-217ENST00000489072 NPM2Q86SE8 214 aaKnown RBP32.9■■■□□ 2.86
HMGN1-217ENST00000489072 DZIP3Q86Y13 1208 aaKnown RBP32.9■■■□□ 2.86
HMGN1-217ENST00000489072 ZNF316A6NFI3 1004 aaPredicted RBP32.89■■■□□ 2.86
HMGN1-217ENST00000489072 GIGYF1O75420 1035 aaPredicted RBP32.89■■■□□ 2.86
HMGN1-217ENST00000489072 BCS1LQ9Y276 419 aa32.89■■■□□ 2.86
HMGN1-217ENST00000489072 CHRNA5P30532 468 aa32.88■■■□□ 2.85
HMGN1-217ENST00000489072 LMOD3Q0VAK6 560 aa32.88■■■□□ 2.85
HMGN1-217ENST00000489072 NEUROD2Q15784 382 aa32.88■■■□□ 2.85
HMGN1-217ENST00000489072 ARFGEF1Q9Y6D6 1849 aa32.86■■■□□ 2.85
HMGN1-217ENST00000489072 TSPYL4Q9UJ04 414 aa32.86■■■□□ 2.85
HMGN1-217ENST00000489072 CARMIL3Q8ND23 1372 aa32.85■■■□□ 2.85
HMGN1-217ENST00000489072 TRIM35Q9UPQ4 493 aa32.84■■■□□ 2.85
HMGN1-217ENST00000489072 ANKRD31Q8N7Z5 1873 aa32.83■■■□□ 2.85
HMGN1-217ENST00000489072 PIM2Q9P1W9 311 aa32.83■■■□□ 2.85
HMGN1-217ENST00000489072 DLEC1Q9Y238 1755 aa32.82■■■□□ 2.84
HMGN1-217ENST00000489072 CCDC184Q52MB2 194 aa32.8■■■□□ 2.84
HMGN1-217ENST00000489072 BABAM1Q9NWV8 329 aa32.8■■■□□ 2.84
HMGN1-217ENST00000489072 DALRD3Q5D0E6 543 aaKnown RBP32.78■■■□□ 2.84
HMGN1-217ENST00000489072 PRR5LQ6MZQ0 368 aa32.78■■■□□ 2.84
HMGN1-217ENST00000489072 CLEC4GQ6UXB4 293 aa32.78■■■□□ 2.84
HMGN1-217ENST00000489072 SETDB2Q96T68 719 aa32.78■■■□□ 2.84
HMGN1-217ENST00000489072 ADCY9O60503 1353 aa32.78■■■□□ 2.84
HMGN1-217ENST00000489072 CCDC24Q8N4L8 307 aa32.77■■■□□ 2.84
HMGN1-217ENST00000489072 ATP10DQ9P241 1426 aa32.76■■■□□ 2.83
HMGN1-217ENST00000489072 ARHGAP27Q6ZUM4 889 aa32.75■■■□□ 2.83
HMGN1-217ENST00000489072 CHL1O00533 1208 aa32.74■■■□□ 2.83
HMGN1-217ENST00000489072 NGEFQ8N5V2 710 aa32.74■■■□□ 2.83
HMGN1-217ENST00000489072 ZNF652Q9Y2D9 606 aa32.74■■■□□ 2.83
HMGN1-217ENST00000489072 COL11A2P13942 1736 aaPredicted RBP32.74■■■□□ 2.83
HMGN1-217ENST00000489072 RGL2O15211 777 aa32.73■■■□□ 2.83
HMGN1-217ENST00000489072 HLFQ16534 295 aa32.73■■■□□ 2.83
HMGN1-217ENST00000489072 C2CD5Q86YS7 1000 aa32.73■■■□□ 2.83
HMGN1-217ENST00000489072 NUP98P52948 1817 aa32.72■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms