RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 BRWD3Q6RI45 1802 aa13.44□□□□□ -0.26
SKA1-204ENST00000488454 POTEFA5A3E0 1075 aa13.44□□□□□ -0.26
SKA1-204ENST00000488454 WWC1Q8IX03 1113 aa13.44□□□□□ -0.26
SKA1-204ENST00000488454 THUMPD2Q9BTF0 503 aaKnown RBP13.44□□□□□ -0.26
SKA1-204ENST00000488454 LAS1LQ9Y4W2 734 aaKnown RBP13.44□□□□□ -0.26
SKA1-204ENST00000488454 KDM6AO15550 1401 aaPredicted RBP13.44□□□□□ -0.26
SKA1-204ENST00000488454 BTBD11A6QL63 1104 aa13.43□□□□□ -0.26
SKA1-204ENST00000488454 HNRNPUQ00839 825 aaKnown RBP eCLIP13.43□□□□□ -0.26
SKA1-204ENST00000488454 GOLGA2Q08379 1002 aa13.43□□□□□ -0.26
SKA1-204ENST00000488454 LHX8Q68G74 356 aa13.43□□□□□ -0.26
SKA1-204ENST00000488454 SMARCC1Q92922 1105 aaPredicted RBP13.43□□□□□ -0.26
SKA1-204ENST00000488454 CEMIPQ8WUJ3 1361 aa13.43□□□□□ -0.26
SKA1-204ENST00000488454 PTF1AQ7RTS3 328 aa13.42□□□□□ -0.26
SKA1-204ENST00000488454 WDR63Q8IWG1 891 aa13.42□□□□□ -0.26
SKA1-204ENST00000488454 TTC5Q8N0Z6 440 aa13.42□□□□□ -0.26
SKA1-204ENST00000488454 COLQQ9Y215 455 aaPredicted RBP13.42□□□□□ -0.26
SKA1-204ENST00000488454 BAG6P46379 1132 aa13.41□□□□□ -0.26
SKA1-204ENST00000488454 UPF1Q92900 1129 aaKnown RBP eCLIP13.41□□□□□ -0.26
SKA1-204ENST00000488454 BABAM1Q9NWV8 329 aa13.41□□□□□ -0.26
SKA1-204ENST00000488454 SHANK3Q9BYB0 1731 aa13.41□□□□□ -0.26
SKA1-204ENST00000488454 POTEB2H3BUK9 544 aa13.4□□□□□ -0.26
SKA1-204ENST00000488454 SEC24BO95487 1268 aa13.4□□□□□ -0.26
SKA1-204ENST00000488454 GNAI1P63096 354 aa13.4□□□□□ -0.26
SKA1-204ENST00000488454 MKRN3Q13064 507 aaKnown RBP13.4□□□□□ -0.26
SKA1-204ENST00000488454 ATG3Q9NT62 314 aa13.4□□□□□ -0.26
SKA1-204ENST00000488454 TSPYL4Q9UJ04 414 aa13.4□□□□□ -0.26
SKA1-204ENST00000488454 ASAP1Q9ULH1 1129 aa13.4□□□□□ -0.26
SKA1-204ENST00000488454 KAT6BQ8WYB5 2073 aa13.4□□□□□ -0.27
SKA1-204ENST00000488454 PLSCR1O15162 318 aa13.39□□□□□ -0.27
SKA1-204ENST00000488454 HMGB2P26583 209 aaKnown RBP13.39□□□□□ -0.27
SKA1-204ENST00000488454 IRX5P78411 483 aaPredicted RBP13.39□□□□□ -0.27
SKA1-204ENST00000488454 SLC39A6Q13433 755 aa13.39□□□□□ -0.27
SKA1-204ENST00000488454 ZNF790Q6PG37 636 aa13.39□□□□□ -0.27
SKA1-204ENST00000488454 CFAP44Q96MT7 982 aa13.39□□□□□ -0.27
SKA1-204ENST00000488454 IFT57Q9NWB7 429 aa13.39□□□□□ -0.27
SKA1-204ENST00000488454 MIS18AQ9NYP9 233 aa13.39□□□□□ -0.27
SKA1-204ENST00000488454 PTCD1O75127 700 aaKnown RBP13.38□□□□□ -0.27
SKA1-204ENST00000488454 IL16Q14005 1332 aa13.38□□□□□ -0.27
SKA1-204ENST00000488454 PALLDQ8WX93 1383 aa13.37□□□□□ -0.27
SKA1-204ENST00000488454 CHL1O00533 1208 aa13.37□□□□□ -0.27
SKA1-204ENST00000488454 EN1Q05925 392 aaPredicted RBP13.37□□□□□ -0.27
SKA1-204ENST00000488454 FMNL2Q96PY5 1086 aa13.37□□□□□ -0.27
SKA1-204ENST00000488454 SLC27A3Q5K4L6 730 aa13.36□□□□□ -0.27
SKA1-204ENST00000488454 DEFB132Q7Z7B7 95 aa13.36□□□□□ -0.27
SKA1-204ENST00000488454 MYH16Q9H6N6 1097 aa13.36□□□□□ -0.27
SKA1-204ENST00000488454 LOC102724428A0A0B4J2F2 783 aa13.35□□□□□ -0.27
SKA1-204ENST00000488454 KCNQ3O43525 872 aa13.35□□□□□ -0.27
SKA1-204ENST00000488454 PLCG2P16885 1265 aa13.35□□□□□ -0.27
SKA1-204ENST00000488454 ATP6V1AP38606 617 aa13.35□□□□□ -0.27
SKA1-204ENST00000488454 SIK1P57059 783 aa13.35□□□□□ -0.27
SKA1-204ENST00000488454 TXNRD1Q16881 649 aa13.35□□□□□ -0.27
SKA1-204ENST00000488454 YTHDC1Q96MU7 727 aaKnown RBP13.35□□□□□ -0.27
SKA1-204ENST00000488454 RTN4Q9NQC3 1192 aaKnown RBP13.35□□□□□ -0.27
SKA1-204ENST00000488454 CCNL1Q9UK58 526 aaPredicted RBP13.35□□□□□ -0.27
SKA1-204ENST00000488454 DOT1LQ8TEK3 1739 aa13.35□□□□□ -0.27
SKA1-204ENST00000488454 MRC1P22897 1456 aa13.35□□□□□ -0.27
SKA1-204ENST00000488454 SCN11AQ9UI33 1791 aa13.35□□□□□ -0.27
SKA1-204ENST00000488454 NHSQ6T4R5 1651 aa13.34□□□□□ -0.27
SKA1-204ENST00000488454 E9PSI1 815 aa13.34□□□□□ -0.27
SKA1-204ENST00000488454 STK25O00506 426 aa13.34□□□□□ -0.27
SKA1-204ENST00000488454 ZNF853P0CG23 659 aa13.34□□□□□ -0.27
SKA1-204ENST00000488454 EZH2Q15910 746 aaKnown RBP13.34□□□□□ -0.27
SKA1-204ENST00000488454 EFCAB3Q8N7B9 438 aa13.34□□□□□ -0.27
SKA1-204ENST00000488454 CAMKK2Q96RR4 588 aa13.34□□□□□ -0.27
SKA1-204ENST00000488454 TEX13AQ9BXU3 409 aaPredicted RBP13.34□□□□□ -0.27
SKA1-204ENST00000488454 OCEL1Q9H607 264 aa13.34□□□□□ -0.27
SKA1-204ENST00000488454 MBIPQ9NS73 344 aa13.34□□□□□ -0.27
SKA1-204ENST00000488454 STK24Q9Y6E0 443 aa13.34□□□□□ -0.27
SKA1-204ENST00000488454 ZNF521Q96K83 1311 aa13.34□□□□□ -0.27
SKA1-204ENST00000488454 EP400Q96L91 3159 aa13.33□□□□□ -0.28
SKA1-204ENST00000488454 SNRPA1P09661 255 aaKnown RBP13.33□□□□□ -0.28
SKA1-204ENST00000488454 EIF4A1P60842 406 aaKnown RBP13.33□□□□□ -0.28
SKA1-204ENST00000488454 VSIG10Q8N0Z9 540 aa13.33□□□□□ -0.28
SKA1-204ENST00000488454 ZNF496Q96IT1 587 aaPredicted RBP13.33□□□□□ -0.28
SKA1-204ENST00000488454 ADAMTS7Q9UKP4 1686 aa13.33□□□□□ -0.28
SKA1-204ENST00000488454 ZBED9Q6R2W3 1325 aa13.33□□□□□ -0.28
SKA1-204ENST00000488454 TOGARAM1Q9Y4F4 1720 aa13.33□□□□□ -0.28
SKA1-204ENST00000488454 DLG5Q8TDM6 1919 aa13.33□□□□□ -0.28
SKA1-204ENST00000488454 STARD3NLO95772 234 aa13.32□□□□□ -0.28
SKA1-204ENST00000488454 TSR2Q969E8 191 aaKnown RBP13.32□□□□□ -0.28
SKA1-204ENST00000488454 SBF2Q86WG5 1849 aa13.32□□□□□ -0.28
SKA1-204ENST00000488454 POTEJP0CG39 1038 aa13.31□□□□□ -0.28
SKA1-204ENST00000488454 KCNQ4P56696 695 aa13.31□□□□□ -0.28
SKA1-204ENST00000488454 SLFN5Q08AF3 891 aa13.31□□□□□ -0.28
SKA1-204ENST00000488454 CHMP4AQ9BY43 222 aa13.31□□□□□ -0.28
SKA1-204ENST00000488454 HEG1Q9ULI3 1381 aa13.31□□□□□ -0.28
SKA1-204ENST00000488454 ITGB4P16144 1822 aa13.3□□□□□ -0.28
SKA1-204ENST00000488454 GIGYF1O75420 1035 aaPredicted RBP13.3□□□□□ -0.28
SKA1-204ENST00000488454 NBPF14Q5TI25 921 aa13.3□□□□□ -0.28
SKA1-204ENST00000488454 CDCA7LQ96GN5 454 aa13.3□□□□□ -0.28
SKA1-204ENST00000488454 BTAF1O14981 1849 aa13.29□□□□□ -0.28
SKA1-204ENST00000488454 DUSP27Q5VZP5 1158 aa13.29□□□□□ -0.28
SKA1-204ENST00000488454 DNAJC10Q8IXB1 793 aa13.29□□□□□ -0.28
SKA1-204ENST00000488454 PDCD7Q8N8D1 485 aaKnown RBP13.29□□□□□ -0.28
SKA1-204ENST00000488454 SLC4A9Q96Q91 983 aa13.29□□□□□ -0.28
SKA1-204ENST00000488454 LRRC4BQ9NT99 713 aa13.29□□□□□ -0.28
SKA1-204ENST00000488454 FANCIQ9NVI1 1328 aa13.29□□□□□ -0.28
SKA1-204ENST00000488454 ELL2O00472 640 aaPredicted RBP13.28□□□□□ -0.28
SKA1-204ENST00000488454 EIF2S2P20042 333 aaKnown RBP13.28□□□□□ -0.28
SKA1-204ENST00000488454 ITPK1Q13572 414 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms