RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 ZNF496Q96IT1 587 aaPredicted RBP30.19■■■□□ 2.42
PTPN4-211ENST00000488279 TEX13AQ9BXU3 409 aaPredicted RBP30.19■■■□□ 2.42
PTPN4-211ENST00000488279 CANXP27824 592 aaKnown RBP30.18■■■□□ 2.42
PTPN4-211ENST00000488279 COL15A1P39059 1388 aa30.16■■■□□ 2.42
PTPN4-211ENST00000488279 CEMIPQ8WUJ3 1361 aa30.16■■■□□ 2.42
PTPN4-211ENST00000488279 POLRMTO00411 1230 aaKnown RBP30.16■■■□□ 2.42
PTPN4-211ENST00000488279 VIRMAQ69YN4 1812 aaKnown RBP30.15■■■□□ 2.42
PTPN4-211ENST00000488279 KIF13BQ9NQT8 1826 aa30.15■■■□□ 2.42
PTPN4-211ENST00000488279 ATP10DQ9P241 1426 aa30.15■■■□□ 2.42
PTPN4-211ENST00000488279 BTBD11A6QL63 1104 aa30.15■■■□□ 2.42
PTPN4-211ENST00000488279 RTF1Q92541 710 aaKnown RBP30.15■■■□□ 2.42
PTPN4-211ENST00000488279 FMNL2Q96PY5 1086 aa30.15■■■□□ 2.42
PTPN4-211ENST00000488279 HEG1Q9ULI3 1381 aa30.15■■■□□ 2.42
PTPN4-211ENST00000488279 KCNA3P22001 575 aa30.14■■■□□ 2.42
PTPN4-211ENST00000488279 A0A087WZG4 1122 aa30.12■■■□□ 2.41
PTPN4-211ENST00000488279 EIF5P55010 431 aaKnown RBP30.12■■■□□ 2.41
PTPN4-211ENST00000488279 GPBP1L1Q9HC44 474 aaPredicted RBP30.12■■■□□ 2.41
PTPN4-211ENST00000488279 PIM2Q9P1W9 311 aa30.12■■■□□ 2.41
PTPN4-211ENST00000488279 NFIXQ14938 502 aa30.11■■■□□ 2.41
PTPN4-211ENST00000488279 ARHGAP27Q6ZUM4 889 aa30.11■■■□□ 2.41
PTPN4-211ENST00000488279 ADCY9O60503 1353 aa30.1■■■□□ 2.41
PTPN4-211ENST00000488279 KCNQ3O43525 872 aa30.09■■■□□ 2.41
PTPN4-211ENST00000488279 MCM10Q7L590 875 aa30.09■■■□□ 2.41
PTPN4-211ENST00000488279 N4BP2Q86UW6 1770 aaPredicted RBP30.09■■■□□ 2.41
PTPN4-211ENST00000488279 UBR2Q8IWV8 1755 aa30.09■■■□□ 2.41
PTPN4-211ENST00000488279 BCL2L12Q9HB09 334 aa30.09■■■□□ 2.41
PTPN4-211ENST00000488279 HTATSF1O43719 755 aaKnown RBP30.08■■■□□ 2.41
PTPN4-211ENST00000488279 DALRD3Q5D0E6 543 aaKnown RBP30.08■■■□□ 2.41
PTPN4-211ENST00000488279 ZNF526Q8TF50 670 aaPredicted RBP30.08■■■□□ 2.41
PTPN4-211ENST00000488279 KIAA1551Q9HCM1 1747 aa30.08■■■□□ 2.41
PTPN4-211ENST00000488279 NPM2Q86SE8 214 aaKnown RBP30.07■■■□□ 2.4
PTPN4-211ENST00000488279 SERPINB2P05120 415 aa30.06■■■□□ 2.4
PTPN4-211ENST00000488279 NEFMP07197 916 aa30.06■■■□□ 2.4
PTPN4-211ENST00000488279 CHRNA5P30532 468 aa30.06■■■□□ 2.4
PTPN4-211ENST00000488279 IL6STP40189 918 aaPredicted RBP30.06■■■□□ 2.4
PTPN4-211ENST00000488279 SENP3-EIF4A1A0A087X0R7 540 aa30.05■■■□□ 2.4
PTPN4-211ENST00000488279 ZNF330Q9Y3S2 320 aaPredicted RBP30.05■■■□□ 2.4
PTPN4-211ENST00000488279 A1BGP04217 495 aa30.04■■■□□ 2.4
PTPN4-211ENST00000488279 DCTN1Q14203 1278 aa30.03■■■□□ 2.4
PTPN4-211ENST00000488279 TBC1D2BQ9UPU7 963 aa30.03■■■□□ 2.4
PTPN4-211ENST00000488279 SIPA1L3O60292 1781 aaPredicted RBP30.03■■■□□ 2.4
PTPN4-211ENST00000488279 BICDL1Q6ZP65 573 aa30.02■■■□□ 2.4
PTPN4-211ENST00000488279 SNRPA1P09661 255 aaKnown RBP30■■■□□ 2.39
PTPN4-211ENST00000488279 TAF7Q15545 349 aaPredicted RBP30■■■□□ 2.39
PTPN4-211ENST00000488279 USP16Q9Y5T5 823 aa30■■■□□ 2.39
PTPN4-211ENST00000488279 TBC1D9BQ66K14 1250 aa29.98■■■□□ 2.39
PTPN4-211ENST00000488279 PNNQ9H307 717 aaKnown RBP29.98■■■□□ 2.39
PTPN4-211ENST00000488279 PLEKHF1Q96S99 279 aa29.96■■■□□ 2.39
PTPN4-211ENST00000488279 PRAMEF22A3QJZ6 481 aa29.95■■■□□ 2.39
PTPN4-211ENST00000488279 RALBP1Q15311 655 aa29.95■■■□□ 2.39
PTPN4-211ENST00000488279 BRCA1P38398 1863 aaKnown RBP29.94■■■□□ 2.38
PTPN4-211ENST00000488279 H0YIN7 160 aa29.94■■■□□ 2.38
PTPN4-211ENST00000488279 C9orf131Q5VYM1 1079 aa29.94■■■□□ 2.38
PTPN4-211ENST00000488279 CAMTA2O94983 1202 aa29.93■■■□□ 2.38
PTPN4-211ENST00000488279 DZIP3Q86Y13 1208 aaKnown RBP29.93■■■□□ 2.38
PTPN4-211ENST00000488279 C2CD5Q86YS7 1000 aa29.93■■■□□ 2.38
PTPN4-211ENST00000488279 SETDB2Q96T68 719 aa29.93■■■□□ 2.38
PTPN4-211ENST00000488279 MIS18AQ9NYP9 233 aa29.93■■■□□ 2.38
PTPN4-211ENST00000488279 PIP4K2AP48426 406 aaPredicted RBP29.92■■■□□ 2.38
PTPN4-211ENST00000488279 NFE2L2Q16236 605 aa29.91■■■□□ 2.38
PTPN4-211ENST00000488279 TTLL6Q8N841 843 aa29.91■■■□□ 2.38
PTPN4-211ENST00000488279 PNISRQ8TF01 805 aaKnown RBP29.91■■■□□ 2.38
PTPN4-211ENST00000488279 CARMIL3Q8ND23 1372 aa29.9■■■□□ 2.38
PTPN4-211ENST00000488279 CEP350Q5VT06 3117 aa29.9■■■□□ 2.38
PTPN4-211ENST00000488279 DDX10Q13206 875 aaKnown RBP29.9■■■□□ 2.38
PTPN4-211ENST00000488279 BRIP1Q9BX63 1249 aa29.9■■■□□ 2.38
PTPN4-211ENST00000488279 PDZRN3Q9UPQ7 1066 aa29.9■■■□□ 2.38
PTPN4-211ENST00000488279 NRXN2Q9P2S2 1712 aa29.9■■■□□ 2.38
PTPN4-211ENST00000488279 MAPK8IP3Q9UPT6 1336 aa29.9■■■□□ 2.38
PTPN4-211ENST00000488279 AFDNP55196 1824 aaKnown RBP29.89■■■□□ 2.38
PTPN4-211ENST00000488279 PDE6BP35913 854 aa29.89■■■□□ 2.38
PTPN4-211ENST00000488279 ARFGEF1Q9Y6D6 1849 aa29.88■■■□□ 2.37
PTPN4-211ENST00000488279 KIF3CO14782 793 aa29.88■■■□□ 2.37
PTPN4-211ENST00000488279 NPHP1O15259 732 aa29.88■■■□□ 2.37
PTPN4-211ENST00000488279 PRR5LQ6MZQ0 368 aa29.88■■■□□ 2.37
PTPN4-211ENST00000488279 CLEC4GQ6UXB4 293 aa29.87■■■□□ 2.37
PTPN4-211ENST00000488279 RNF181Q9P0P0 153 aa29.87■■■□□ 2.37
PTPN4-211ENST00000488279 ZNF652Q9Y2D9 606 aa29.86■■■□□ 2.37
PTPN4-211ENST00000488279 NBPF26B4DH59 902 aa29.85■■■□□ 2.37
PTPN4-211ENST00000488279 NBPF10Q6P3W6 841 aaKnown RBP29.85■■■□□ 2.37
PTPN4-211ENST00000488279 CCDC24Q8N4L8 307 aa29.85■■■□□ 2.37
PTPN4-211ENST00000488279 NBPF15Q8N660 670 aa29.85■■■□□ 2.37
PTPN4-211ENST00000488279 CNBD1Q8NA66 436 aa29.85■■■□□ 2.37
PTPN4-211ENST00000488279 ZNF622Q969S3 477 aaKnown RBP eCLIP29.84■■■□□ 2.37
PTPN4-211ENST00000488279 ST5P78524 1137 aa29.83■■■□□ 2.37
PTPN4-211ENST00000488279 THUMPD2Q9BTF0 503 aaKnown RBP29.83■■■□□ 2.37
PTPN4-211ENST00000488279 SCN7AQ01118 1682 aa29.82■■■□□ 2.36
PTPN4-211ENST00000488279 RGL2O15211 777 aa29.8■■■□□ 2.36
PTPN4-211ENST00000488279 EIF4A1P60842 406 aaKnown RBP29.8■■■□□ 2.36
PTPN4-211ENST00000488279 NBPF5PQ86XG9 351 aaPredicted RBP29.8■■■□□ 2.36
PTPN4-211ENST00000488279 NMRK2Q9NPI5 230 aa29.8■■■□□ 2.36
PTPN4-211ENST00000488279 LMNB1P20700 586 aa29.79■■■□□ 2.36
PTPN4-211ENST00000488279 RASSF7Q02833 373 aa29.79■■■□□ 2.36
PTPN4-211ENST00000488279 KDM2BQ8NHM5 1336 aa29.78■■■□□ 2.36
PTPN4-211ENST00000488279 TOMM70O94826 608 aa29.78■■■□□ 2.36
PTPN4-211ENST00000488279 HSPA6P17066 643 aa29.78■■■□□ 2.36
PTPN4-211ENST00000488279 RIPK4P57078 832 aa29.78■■■□□ 2.36
PTPN4-211ENST00000488279 MYBBP1AQ9BQG0 1328 aaKnown RBP29.77■■■□□ 2.36
PTPN4-211ENST00000488279 TPTE2Q6XPS3 522 aa29.76■■■□□ 2.35
PTPN4-211ENST00000488279 NIP7Q9Y221 180 aaKnown RBP eCLIP29.76■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms