RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 SLC4A10Q6U841 1118 aa11.9□□□□□ -0.5
SF3B1-211ENST00000487698 SIRT2Q8IXJ6 389 aa11.9□□□□□ -0.5
SF3B1-211ENST00000487698 MEIS3Q99687 375 aa11.9□□□□□ -0.5
SF3B1-211ENST00000487698 DDX21Q9NR30 783 aaKnown RBP eCLIP11.9□□□□□ -0.5
SF3B1-211ENST00000487698 BARGINQ6ZT62 677 aa11.89□□□□□ -0.51
SF3B1-211ENST00000487698 UNC5CLQ8IV45 518 aa11.89□□□□□ -0.51
SF3B1-211ENST00000487698 HYPKQ9NX55 129 aa11.89□□□□□ -0.51
SF3B1-211ENST00000487698 ARFGEF2Q9Y6D5 1785 aa11.89□□□□□ -0.51
SF3B1-211ENST00000487698 EXOC5O00471 708 aa11.89□□□□□ -0.51
SF3B1-211ENST00000487698 BCL9O00512 1426 aa11.89□□□□□ -0.51
SF3B1-211ENST00000487698 KAT6BQ8WYB5 2073 aa11.88□□□□□ -0.51
SF3B1-211ENST00000487698 LRP10Q7Z4F1 713 aa11.88□□□□□ -0.51
SF3B1-211ENST00000487698 FNBP4Q8N3X1 1017 aaPredicted RBP11.88□□□□□ -0.51
SF3B1-211ENST00000487698 TMOD3Q9NYL9 352 aa11.88□□□□□ -0.51
SF3B1-211ENST00000487698 PDZRN3Q9UPQ7 1066 aa11.88□□□□□ -0.51
SF3B1-211ENST00000487698 USP16Q9Y5T5 823 aa11.88□□□□□ -0.51
SF3B1-211ENST00000487698 THSD7AQ9UPZ6 1657 aa11.87□□□□□ -0.51
SF3B1-211ENST00000487698 PI4KAP2A4QPH2 592 aa11.87□□□□□ -0.51
SF3B1-211ENST00000487698 PI4KAP1Q8N8J0 262 aa11.87□□□□□ -0.51
SF3B1-211ENST00000487698 DNAAF4Q8WXU2 420 aa11.87□□□□□ -0.51
SF3B1-211ENST00000487698 NUP188Q5SRE5 1749 aa11.87□□□□□ -0.51
SF3B1-211ENST00000487698 HSPA1LP34931 641 aa11.87□□□□□ -0.51
SF3B1-211ENST00000487698 VPS72Q15906 364 aa11.87□□□□□ -0.51
SF3B1-211ENST00000487698 ANKRD44Q8N8A2 993 aa11.87□□□□□ -0.51
SF3B1-211ENST00000487698 C8orf37Q96NL8 207 aa11.87□□□□□ -0.51
SF3B1-211ENST00000487698 ERBB4Q15303 1308 aa11.86□□□□□ -0.51
SF3B1-211ENST00000487698 BEND3Q5T5X7 828 aa11.86□□□□□ -0.51
SF3B1-211ENST00000487698 CEP85Q6P2H3 762 aa11.86□□□□□ -0.51
SF3B1-211ENST00000487698 KSR2Q6VAB6 950 aa11.86□□□□□ -0.51
SF3B1-211ENST00000487698 RPAP2Q8IXW5 612 aaPredicted RBP11.86□□□□□ -0.51
SF3B1-211ENST00000487698 PIGBQ92521 554 aa11.86□□□□□ -0.51
SF3B1-211ENST00000487698 CICQ96RK0 1608 aaPredicted RBP11.86□□□□□ -0.51
SF3B1-211ENST00000487698 TJP1Q07157 1748 aa11.86□□□□□ -0.51
SF3B1-211ENST00000487698 IBTKQ9P2D0 1353 aaPredicted RBP11.86□□□□□ -0.51
SF3B1-211ENST00000487698 RGS3P49796 1198 aa11.86□□□□□ -0.51
SF3B1-211ENST00000487698 DDB1Q16531 1140 aa11.86□□□□□ -0.51
SF3B1-211ENST00000487698 GCC1Q96CN9 775 aa11.86□□□□□ -0.51
SF3B1-211ENST00000487698 NGLY1Q96IV0 654 aa11.86□□□□□ -0.51
SF3B1-211ENST00000487698 RBM19Q9Y4C8 960 aaKnown RBP11.86□□□□□ -0.51
SF3B1-211ENST00000487698 AFDNP55196 1824 aaKnown RBP11.85□□□□□ -0.51
SF3B1-211ENST00000487698 GNAI3P08754 354 aa11.85□□□□□ -0.51
SF3B1-211ENST00000487698 SRCIN1Q9C0H9 1055 aa11.85□□□□□ -0.51
SF3B1-211ENST00000487698 USP44Q9H0E7 712 aa11.85□□□□□ -0.51
SF3B1-211ENST00000487698 NUCB1Q02818 461 aa11.84□□□□□ -0.51
SF3B1-211ENST00000487698 MAP3K2Q9Y2U5 619 aa11.84□□□□□ -0.51
SF3B1-211ENST00000487698 GNAI2P04899 355 aa11.84□□□□□ -0.51
SF3B1-211ENST00000487698 MARCH10Q8NA82 808 aaPredicted RBP11.84□□□□□ -0.51
SF3B1-211ENST00000487698 ATG3Q9NT62 314 aa11.84□□□□□ -0.51
SF3B1-211ENST00000487698 CCDC9Q9Y3X0 531 aaKnown RBP11.84□□□□□ -0.51
SF3B1-211ENST00000487698 DDX58O95786 925 aaKnown RBP11.83□□□□□ -0.52
SF3B1-211ENST00000487698 MYL6BP14649 208 aa11.83□□□□□ -0.52
SF3B1-211ENST00000487698 VSIG10Q8N0Z9 540 aa11.83□□□□□ -0.52
SF3B1-211ENST00000487698 XAGE3Q8WTP9 111 aa11.83□□□□□ -0.52
SF3B1-211ENST00000487698 ASAP1Q9ULH1 1129 aa11.83□□□□□ -0.52
SF3B1-211ENST00000487698 NBPF26B4DH59 902 aa11.83□□□□□ -0.52
SF3B1-211ENST00000487698 PTCD1O75127 700 aaKnown RBP11.83□□□□□ -0.52
SF3B1-211ENST00000487698 ALDH1L1O75891 902 aa11.83□□□□□ -0.52
SF3B1-211ENST00000487698 PDE4AP27815 886 aa11.83□□□□□ -0.52
SF3B1-211ENST00000487698 NBPF14Q5TI25 921 aa11.83□□□□□ -0.52
SF3B1-211ENST00000487698 NBPF10Q6P3W6 841 aaKnown RBP11.83□□□□□ -0.52
SF3B1-211ENST00000487698 NBPF15Q8N660 670 aa11.83□□□□□ -0.52
SF3B1-211ENST00000487698 BACH2Q9BYV9 841 aa11.83□□□□□ -0.52
SF3B1-211ENST00000487698 DCTPP1Q9H773 170 aa11.83□□□□□ -0.52
SF3B1-211ENST00000487698 COPS6Q7L5N1 327 aa11.82□□□□□ -0.52
SF3B1-211ENST00000487698 UBTFL1P0CB47 393 aaPredicted RBP11.81□□□□□ -0.52
SF3B1-211ENST00000487698 CHD1LQ86WJ1 897 aa11.81□□□□□ -0.52
SF3B1-211ENST00000487698 LINS1Q8NG48 757 aa11.81□□□□□ -0.52
SF3B1-211ENST00000487698 USP21Q9UK80 565 aa11.81□□□□□ -0.52
SF3B1-211ENST00000487698 ZNF831Q5JPB2 1677 aa11.81□□□□□ -0.52
SF3B1-211ENST00000487698 RREB1Q92766 1687 aa11.81□□□□□ -0.52
SF3B1-211ENST00000487698 PIP4K2AP48426 406 aaPredicted RBP11.81□□□□□ -0.52
SF3B1-211ENST00000487698 AIMP1Q12904 312 aaKnown RBP11.81□□□□□ -0.52
SF3B1-211ENST00000487698 FAM98CQ17RN3 349 aaKnown RBP11.81□□□□□ -0.52
SF3B1-211ENST00000487698 LRRFIP2Q9Y608 721 aaKnown RBP11.81□□□□□ -0.52
SF3B1-211ENST00000487698 HMMRO75330 724 aa11.8□□□□□ -0.52
SF3B1-211ENST00000487698 NBPF7P0C2Y1 421 aaPredicted RBP11.8□□□□□ -0.52
SF3B1-211ENST00000487698 PRIM1P49642 420 aaKnown RBP11.8□□□□□ -0.52
SF3B1-211ENST00000487698 C8orf34Q49A92 452 aa11.8□□□□□ -0.52
SF3B1-211ENST00000487698 TEX13AQ9BXU3 409 aaPredicted RBP11.8□□□□□ -0.52
SF3B1-211ENST00000487698 UTYO14607 1347 aa11.8□□□□□ -0.52
SF3B1-211ENST00000487698 ATRNO75882 1429 aa11.8□□□□□ -0.52
SF3B1-211ENST00000487698 ATP8B2P98198 1209 aa11.8□□□□□ -0.52
SF3B1-211ENST00000487698 FAM161AQ3B820 660 aa11.8□□□□□ -0.52
SF3B1-211ENST00000487698 ANKRD13DQ6ZTN6 518 aa11.8□□□□□ -0.52
SF3B1-211ENST00000487698 METTL22Q9BUU2 404 aaPredicted RBP11.8□□□□□ -0.52
SF3B1-211ENST00000487698 NHSQ6T4R5 1651 aa11.79□□□□□ -0.52
SF3B1-211ENST00000487698 COL5A3P25940 1745 aaPredicted RBP11.79□□□□□ -0.52
SF3B1-211ENST00000487698 A1BGP04217 495 aa11.79□□□□□ -0.52
SF3B1-211ENST00000487698 IGKV5-2P06315 115 aa11.79□□□□□ -0.52
SF3B1-211ENST00000487698 CWF19L2Q2TBE0 894 aaKnown RBP11.79□□□□□ -0.52
SF3B1-211ENST00000487698 RIC3Q7Z5B4 369 aa11.79□□□□□ -0.52
SF3B1-211ENST00000487698 DNAJC10Q8IXB1 793 aa11.79□□□□□ -0.52
SF3B1-211ENST00000487698 SLC4A9Q96Q91 983 aa11.79□□□□□ -0.52
SF3B1-211ENST00000487698 PNMA6EA0A0J9YXQ4 647 aa11.78□□□□□ -0.52
SF3B1-211ENST00000487698 ANKRD45Q5TZF3 282 aa11.78□□□□□ -0.52
SF3B1-211ENST00000487698 PLBD2Q8NHP8 589 aa11.78□□□□□ -0.52
SF3B1-211ENST00000487698 LNPKQ9C0E8 428 aa11.78□□□□□ -0.52
SF3B1-211ENST00000487698 AFF2P51816 1311 aa11.78□□□□□ -0.52
SF3B1-211ENST00000487698 SBF2Q86WG5 1849 aa11.78□□□□□ -0.52
SF3B1-211ENST00000487698 ANKRD36CQ5JPF3 1778 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms