RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 DNMT3AQ9Y6K1 912 aaPredicted RBP6.7□□□□□ -1.34
PTCD3-216ENST00000487043 SFI1A8K8P3 1242 aa6.69□□□□□ -1.34
PTCD3-216ENST00000487043 PRMT3O60678 531 aa6.69□□□□□ -1.34
PTCD3-216ENST00000487043 SERPINB4P48594 390 aa6.69□□□□□ -1.34
PTCD3-216ENST00000487043 SEC13P55735 322 aa6.69□□□□□ -1.34
PTCD3-216ENST00000487043 SRSF11Q05519 484 aaKnown RBP6.69□□□□□ -1.34
PTCD3-216ENST00000487043 CCDC102BQ68D86 513 aa6.69□□□□□ -1.34
PTCD3-216ENST00000487043 KANK3Q6NY19 840 aa6.69□□□□□ -1.34
PTCD3-216ENST00000487043 LYPD4Q6UWN0 246 aa6.69□□□□□ -1.34
PTCD3-216ENST00000487043 CUEDC1Q9NWM3 386 aaPredicted RBP6.69□□□□□ -1.34
PTCD3-216ENST00000487043 MEN1O00255 615 aa6.68□□□□□ -1.34
PTCD3-216ENST00000487043 LGR5O75473 907 aa6.68□□□□□ -1.34
PTCD3-216ENST00000487043 DKK1O94907 266 aa6.68□□□□□ -1.34
PTCD3-216ENST00000487043 FOXR1Q6PIV2 292 aa6.68□□□□□ -1.34
PTCD3-216ENST00000487043 RIPOR1Q6ZS17 1223 aa6.68□□□□□ -1.34
PTCD3-216ENST00000487043 SEPT12Q8IYM1 358 aa6.68□□□□□ -1.34
PTCD3-216ENST00000487043 TPCN2Q8NHX9 752 aa6.68□□□□□ -1.34
PTCD3-216ENST00000487043 PRIMPOLQ96LW4 560 aa6.68□□□□□ -1.34
PTCD3-216ENST00000487043 ENAMQ9NRM1 1142 aa6.68□□□□□ -1.34
PTCD3-216ENST00000487043 SOWAHDA6NJG2 315 aa6.67□□□□□ -1.34
PTCD3-216ENST00000487043 CELA2BP08218 269 aaPredicted RBP6.67□□□□□ -1.34
PTCD3-216ENST00000487043 RNF144AP50876 292 aaPredicted RBP6.67□□□□□ -1.34
PTCD3-216ENST00000487043 USP4Q13107 963 aa6.67□□□□□ -1.34
PTCD3-216ENST00000487043 SIRT1Q96EB6 747 aa6.67□□□□□ -1.34
PTCD3-216ENST00000487043 HINFPQ9BQA5 517 aa6.67□□□□□ -1.34
PTCD3-216ENST00000487043 AMOTL2Q9Y2J4 779 aa6.67□□□□□ -1.34
PTCD3-216ENST00000487043 PCDHGA11Q9Y5H2 935 aa6.67□□□□□ -1.34
PTCD3-216ENST00000487043 CCDC180Q9P1Z9 1646 aa6.67□□□□□ -1.34
PTCD3-216ENST00000487043 E9PSI1 815 aa6.66□□□□□ -1.34
PTCD3-216ENST00000487043 GPR25O00155 361 aa6.66□□□□□ -1.34
PTCD3-216ENST00000487043 IGHA1P01876 353 aa6.66□□□□□ -1.34
PTCD3-216ENST00000487043 GAS6Q14393 721 aa6.66□□□□□ -1.34
PTCD3-216ENST00000487043 BIN2Q9UBW5 565 aaPredicted RBP6.66□□□□□ -1.34
PTCD3-216ENST00000487043 ABL1P00519 1130 aa6.65□□□□□ -1.34
PTCD3-216ENST00000487043 FOXK2Q01167 660 aa6.65□□□□□ -1.34
PTCD3-216ENST00000487043 SLC27A3Q5K4L6 730 aa6.65□□□□□ -1.34
PTCD3-216ENST00000487043 TRIM22Q8IYM9 498 aa6.65□□□□□ -1.34
PTCD3-216ENST00000487043 ZNF837Q96EG3 531 aaPredicted RBP6.65□□□□□ -1.34
PTCD3-216ENST00000487043 GMCL1Q96IK5 515 aa6.65□□□□□ -1.34
PTCD3-216ENST00000487043 NLRP3Q96P20 1036 aa6.65□□□□□ -1.34
PTCD3-216ENST00000487043 GAS2L1Q99501 681 aaPredicted RBP6.65□□□□□ -1.34
PTCD3-216ENST00000487043 CXXC1Q9P0U4 656 aaPredicted RBP6.65□□□□□ -1.34
PTCD3-216ENST00000487043 OCLNQ16625 522 aa6.64□□□□□ -1.35
PTCD3-216ENST00000487043 NEDD1Q8NHV4 660 aa6.64□□□□□ -1.35
PTCD3-216ENST00000487043 C1orf216Q8TAB5 229 aa6.64□□□□□ -1.35
PTCD3-216ENST00000487043 MBIPQ9NS73 344 aa6.64□□□□□ -1.35
PTCD3-216ENST00000487043 A0A1W2PRU2 124 aa6.63□□□□□ -1.35
PTCD3-216ENST00000487043 H7C1W4 665 aa6.63□□□□□ -1.35
PTCD3-216ENST00000487043 MYCP01106 439 aaPredicted RBP6.63□□□□□ -1.35
PTCD3-216ENST00000487043 IGF1RP08069 1367 aa6.63□□□□□ -1.35
PTCD3-216ENST00000487043 GPC1P35052 558 aa6.63□□□□□ -1.35
PTCD3-216ENST00000487043 CCDC125Q86Z20 511 aa6.63□□□□□ -1.35
PTCD3-216ENST00000487043 TRERF1Q96PN7 1200 aa6.63□□□□□ -1.35
PTCD3-216ENST00000487043 ESF1Q9H501 851 aaKnown RBP6.63□□□□□ -1.35
PTCD3-216ENST00000487043 ANO2Q9NQ90 1003 aa6.63□□□□□ -1.35
PTCD3-216ENST00000487043 PHF20L1A8MW92 1017 aa6.62□□□□□ -1.35
PTCD3-216ENST00000487043 POU4F2Q12837 409 aa6.62□□□□□ -1.35
PTCD3-216ENST00000487043 ZNF211Q13398 564 aaPredicted RBP6.62□□□□□ -1.35
PTCD3-216ENST00000487043 DBN1Q16643 649 aa6.62□□□□□ -1.35
PTCD3-216ENST00000487043 CC2D2BQ6DHV5 1058 aa6.62□□□□□ -1.35
PTCD3-216ENST00000487043 TAS1R3Q7RTX0 852 aa6.62□□□□□ -1.35
PTCD3-216ENST00000487043 PODNQ7Z5L7 613 aa6.62□□□□□ -1.35
PTCD3-216ENST00000487043 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.62□□□□□ -1.352e-8■■■□□ 18.3
PTCD3-216ENST00000487043 TSEN2Q8NCE0 465 aaKnown RBP6.62□□□□□ -1.35
PTCD3-216ENST00000487043 GTPBP3Q969Y2 492 aaKnown RBP6.62□□□□□ -1.35
PTCD3-216ENST00000487043 MKNK1Q9BUB5 465 aa6.62□□□□□ -1.35
PTCD3-216ENST00000487043 DYRK1BQ9Y463 629 aa6.62□□□□□ -1.35
PTCD3-216ENST00000487043 CNTNAP5Q8WYK1 1306 aa6.61□□□□□ -1.35
PTCD3-216ENST00000487043 SCTRP47872 440 aa6.61□□□□□ -1.35
PTCD3-216ENST00000487043 ERVK-9P63128 1117 aa6.61□□□□□ -1.35
PTCD3-216ENST00000487043 BEND7Q8N7W2 519 aaPredicted RBP6.61□□□□□ -1.35
PTCD3-216ENST00000487043 H3BRB1 525 aa6.6□□□□□ -1.35
PTCD3-216ENST00000487043 BCRP11274 1271 aa6.6□□□□□ -1.35
PTCD3-216ENST00000487043 DNAJC14Q6Y2X3 702 aaPredicted RBP6.6□□□□□ -1.35
PTCD3-216ENST00000487043 CYP2U1Q7Z449 544 aa6.6□□□□□ -1.35
PTCD3-216ENST00000487043 GAS2L2Q8NHY3 880 aa6.6□□□□□ -1.35
PTCD3-216ENST00000487043 TUT1Q9H6E5 874 aaKnown RBP6.6□□□□□ -1.35
PTCD3-216ENST00000487043 SEPT3Q9UH03 358 aa6.6□□□□□ -1.35
PTCD3-216ENST00000487043 NSFL1CQ9UNZ2 370 aaKnown RBP6.6□□□□□ -1.35
PTCD3-216ENST00000487043 UNCXA6NJT0 531 aa6.59□□□□□ -1.35
PTCD3-216ENST00000487043 ERCC3P19447 782 aa6.59□□□□□ -1.35
PTCD3-216ENST00000487043 MX2P20592 715 aa6.59□□□□□ -1.35
PTCD3-216ENST00000487043 GLYCTKQ8IVS8 523 aa6.59□□□□□ -1.35
PTCD3-216ENST00000487043 GTF3C2Q8WUA4 911 aaPredicted RBP6.59□□□□□ -1.35
PTCD3-216ENST00000487043 ZNF358Q9NW07 568 aa6.59□□□□□ -1.35
PTCD3-216ENST00000487043 EGFL7Q9UHF1 273 aa6.59□□□□□ -1.35
PTCD3-216ENST00000487043 RBM47A0AV96 593 aaKnown RBP6.58□□□□□ -1.36
PTCD3-216ENST00000487043 M0R2N6 131 aa6.58□□□□□ -1.36
PTCD3-216ENST00000487043 MSTNO14793 375 aa6.58□□□□□ -1.36
PTCD3-216ENST00000487043 ICMTO60725 284 aa6.58□□□□□ -1.36
PTCD3-216ENST00000487043 STAU1O95793 577 aaKnown RBP6.58□□□□□ -1.36
PTCD3-216ENST00000487043 WEE1P30291 646 aa6.58□□□□□ -1.36
PTCD3-216ENST00000487043 CLN3Q13286 438 aa6.58□□□□□ -1.36
PTCD3-216ENST00000487043 FKBP5Q13451 457 aaPredicted RBP6.58□□□□□ -1.36
PTCD3-216ENST00000487043 NOM1Q5C9Z4 860 aaKnown RBP6.58□□□□□ -1.36
PTCD3-216ENST00000487043 NBPF10Q6P3W6 841 aaKnown RBP6.58□□□□□ -1.36
PTCD3-216ENST00000487043 CAPN12Q6ZSI9 719 aa6.58□□□□□ -1.36
PTCD3-216ENST00000487043 NBPF15Q8N660 670 aa6.58□□□□□ -1.36
PTCD3-216ENST00000487043 ACDQ96AP0 544 aa6.58□□□□□ -1.36
PTCD3-216ENST00000487043 DCAF5Q96JK2 942 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms