RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 CANXP27824 592 aaKnown RBP32.88■■■□□ 2.85
LIME1-206ENST00000487026 TM4SF1P30408 202 aa32.88■■■□□ 2.85
LIME1-206ENST00000487026 ZNF496Q96IT1 587 aaPredicted RBP32.88■■■□□ 2.85
LIME1-206ENST00000487026 ZNF790Q6PG37 636 aa32.87■■■□□ 2.85
LIME1-206ENST00000487026 COL15A1P39059 1388 aa32.86■■■□□ 2.85
LIME1-206ENST00000487026 NARFQ9UHQ1 456 aa32.86■■■□□ 2.85
LIME1-206ENST00000487026 POLRMTO00411 1230 aaKnown RBP32.85■■■□□ 2.85
LIME1-206ENST00000487026 KCNA3P22001 575 aa32.85■■■□□ 2.85
LIME1-206ENST00000487026 ZNF526Q8TF50 670 aaPredicted RBP32.85■■■□□ 2.85
LIME1-206ENST00000487026 UBR2Q8IWV8 1755 aa32.85■■■□□ 2.85
LIME1-206ENST00000487026 FCHSD2O94868 740 aa32.83■■■□□ 2.85
LIME1-206ENST00000487026 STARD3NLO95772 234 aa32.83■■■□□ 2.85
LIME1-206ENST00000487026 ADCY9O60503 1353 aa32.83■■■□□ 2.85
LIME1-206ENST00000487026 KCNQ3O43525 872 aa32.82■■■□□ 2.84
LIME1-206ENST00000487026 CEMIPQ8WUJ3 1361 aa32.82■■■□□ 2.84
LIME1-206ENST00000487026 ARHGAP27Q6ZUM4 889 aa32.81■■■□□ 2.84
LIME1-206ENST00000487026 BCL2L12Q9HB09 334 aa32.81■■■□□ 2.84
LIME1-206ENST00000487026 HEG1Q9ULI3 1381 aa32.81■■■□□ 2.84
LIME1-206ENST00000487026 SENP3-EIF4A1A0A087X0R7 540 aa32.8■■■□□ 2.84
LIME1-206ENST00000487026 BTBD11A6QL63 1104 aa32.8■■■□□ 2.84
LIME1-206ENST00000487026 NFIXQ14938 502 aa32.8■■■□□ 2.84
LIME1-206ENST00000487026 GPBP1L1Q9HC44 474 aaPredicted RBP32.8■■■□□ 2.84
LIME1-206ENST00000487026 SIPA1L3O60292 1781 aaPredicted RBP32.8■■■□□ 2.84
LIME1-206ENST00000487026 CHRNA5P30532 468 aa32.79■■■□□ 2.84
LIME1-206ENST00000487026 MCM10Q7L590 875 aa32.78■■■□□ 2.84
LIME1-206ENST00000487026 FMNL2Q96PY5 1086 aa32.78■■■□□ 2.84
LIME1-206ENST00000487026 PIM2Q9P1W9 311 aa32.78■■■□□ 2.84
LIME1-206ENST00000487026 EIF5P55010 431 aaKnown RBP32.77■■■□□ 2.84
LIME1-206ENST00000487026 TEX13AQ9BXU3 409 aaPredicted RBP32.77■■■□□ 2.84
LIME1-206ENST00000487026 ZNF330Q9Y3S2 320 aaPredicted RBP32.76■■■□□ 2.83
LIME1-206ENST00000487026 DCTN1Q14203 1278 aa32.75■■■□□ 2.83
LIME1-206ENST00000487026 RTF1Q92541 710 aaKnown RBP32.75■■■□□ 2.83
LIME1-206ENST00000487026 A1BGP04217 495 aa32.74■■■□□ 2.83
LIME1-206ENST00000487026 BRCA1P38398 1863 aaKnown RBP32.74■■■□□ 2.83
LIME1-206ENST00000487026 SERPINB2P05120 415 aa32.73■■■□□ 2.83
LIME1-206ENST00000487026 DALRD3Q5D0E6 543 aaKnown RBP32.73■■■□□ 2.83
LIME1-206ENST00000487026 BICDL1Q6ZP65 573 aa32.73■■■□□ 2.83
LIME1-206ENST00000487026 A0A087WZG4 1122 aa32.72■■■□□ 2.83
LIME1-206ENST00000487026 TBC1D2BQ9UPU7 963 aa32.72■■■□□ 2.83
LIME1-206ENST00000487026 USP16Q9Y5T5 823 aa32.69■■■□□ 2.82
LIME1-206ENST00000487026 AFDNP55196 1824 aaKnown RBP32.69■■■□□ 2.82
LIME1-206ENST00000487026 PRAMEF22A3QJZ6 481 aa32.68■■■□□ 2.82
LIME1-206ENST00000487026 IL6STP40189 918 aaPredicted RBP32.68■■■□□ 2.82
LIME1-206ENST00000487026 TBC1D9BQ66K14 1250 aa32.67■■■□□ 2.82
LIME1-206ENST00000487026 PIP4K2AP48426 406 aaPredicted RBP32.66■■■□□ 2.82
LIME1-206ENST00000487026 HTATSF1O43719 755 aaKnown RBP32.64■■■□□ 2.82
LIME1-206ENST00000487026 ARFGEF1Q9Y6D6 1849 aa32.64■■■□□ 2.82
LIME1-206ENST00000487026 NRXN2Q9P2S2 1712 aa32.63■■■□□ 2.81
LIME1-206ENST00000487026 C9orf131Q5VYM1 1079 aa32.63■■■□□ 2.81
LIME1-206ENST00000487026 NPM2Q86SE8 214 aaKnown RBP32.63■■■□□ 2.81
LIME1-206ENST00000487026 MIS18AQ9NYP9 233 aa32.63■■■□□ 2.81
LIME1-206ENST00000487026 CARMIL3Q8ND23 1372 aa32.62■■■□□ 2.81
LIME1-206ENST00000487026 SNRPA1P09661 255 aaKnown RBP32.61■■■□□ 2.81
LIME1-206ENST00000487026 C2CD5Q86YS7 1000 aa32.61■■■□□ 2.81
LIME1-206ENST00000487026 CCDC24Q8N4L8 307 aa32.61■■■□□ 2.81
LIME1-206ENST00000487026 TAF7Q15545 349 aaPredicted RBP32.6■■■□□ 2.81
LIME1-206ENST00000487026 KIF3CO14782 793 aa32.59■■■□□ 2.81
LIME1-206ENST00000487026 CAMTA2O94983 1202 aa32.59■■■□□ 2.81
LIME1-206ENST00000487026 NEFMP07197 916 aa32.59■■■□□ 2.81
LIME1-206ENST00000487026 PLEKHF1Q96S99 279 aa32.59■■■□□ 2.81
LIME1-206ENST00000487026 DZIP3Q86Y13 1208 aaKnown RBP32.58■■■□□ 2.81
LIME1-206ENST00000487026 H0YIN7 160 aa32.56■■■□□ 2.8
LIME1-206ENST00000487026 PRR5LQ6MZQ0 368 aa32.55■■■□□ 2.8
LIME1-206ENST00000487026 TTLL6Q8N841 843 aa32.55■■■□□ 2.8
LIME1-206ENST00000487026 RNF181Q9P0P0 153 aa32.55■■■□□ 2.8
LIME1-206ENST00000487026 SCN7AQ01118 1682 aa32.55■■■□□ 2.8
LIME1-206ENST00000487026 SETDB2Q96T68 719 aa32.54■■■□□ 2.8
LIME1-206ENST00000487026 NBPF26B4DH59 902 aa32.53■■■□□ 2.8
LIME1-206ENST00000487026 DDX10Q13206 875 aaKnown RBP32.53■■■□□ 2.8
LIME1-206ENST00000487026 NFE2L2Q16236 605 aa32.53■■■□□ 2.8
LIME1-206ENST00000487026 NBPF10Q6P3W6 841 aaKnown RBP32.53■■■□□ 2.8
LIME1-206ENST00000487026 NBPF15Q8N660 670 aa32.53■■■□□ 2.8
LIME1-206ENST00000487026 THUMPD2Q9BTF0 503 aaKnown RBP32.53■■■□□ 2.8
LIME1-206ENST00000487026 RASSF7Q02833 373 aa32.52■■■□□ 2.8
LIME1-206ENST00000487026 NMRK2Q9NPI5 230 aa32.52■■■□□ 2.8
LIME1-206ENST00000487026 DLG5Q8TDM6 1919 aa32.51■■■□□ 2.8
LIME1-206ENST00000487026 BRIP1Q9BX63 1249 aa32.51■■■□□ 2.79
LIME1-206ENST00000487026 ZNF622Q969S3 477 aaKnown RBP eCLIP32.5■■■□□ 2.79
LIME1-206ENST00000487026 PDE6BP35913 854 aa32.49■■■□□ 2.79
LIME1-206ENST00000487026 RALBP1Q15311 655 aa32.49■■■□□ 2.79
LIME1-206ENST00000487026 NPHP1O15259 732 aa32.48■■■□□ 2.79
LIME1-206ENST00000487026 CNBD1Q8NA66 436 aa32.48■■■□□ 2.79
LIME1-206ENST00000487026 CEP350Q5VT06 3117 aa32.48■■■□□ 2.79
LIME1-206ENST00000487026 ANKRD31Q8N7Z5 1873 aa32.48■■■□□ 2.79
LIME1-206ENST00000487026 MAPK8IP3Q9UPT6 1336 aa32.48■■■□□ 2.79
LIME1-206ENST00000487026 DLEC1Q9Y238 1755 aa32.47■■■□□ 2.79
LIME1-206ENST00000487026 PNNQ9H307 717 aaKnown RBP32.47■■■□□ 2.79
LIME1-206ENST00000487026 ZNF219Q9P2Y4 722 aaPredicted RBP32.47■■■□□ 2.79
LIME1-206ENST00000487026 HSPA6P17066 643 aa32.46■■■□□ 2.79
LIME1-206ENST00000487026 PNISRQ8TF01 805 aaKnown RBP32.46■■■□□ 2.79
LIME1-206ENST00000487026 SBF1O95248 1867 aa32.46■■■□□ 2.79
LIME1-206ENST00000487026 PRELPP51888 382 aa32.45■■■□□ 2.79
LIME1-206ENST00000487026 CLEC4GQ6UXB4 293 aa32.45■■■□□ 2.79
LIME1-206ENST00000487026 BCORQ6W2J9 1755 aa32.45■■■□□ 2.78
LIME1-206ENST00000487026 EIF4A1P60842 406 aaKnown RBP32.43■■■□□ 2.78
LIME1-206ENST00000487026 ST5P78524 1137 aa32.43■■■□□ 2.78
LIME1-206ENST00000487026 PDZRN3Q9UPQ7 1066 aa32.43■■■□□ 2.78
LIME1-206ENST00000487026 NBPF5PQ86XG9 351 aaPredicted RBP32.42■■■□□ 2.78
LIME1-206ENST00000487026 NGEFQ8N5V2 710 aa32.42■■■□□ 2.78
LIME1-206ENST00000487026 ZNF652Q9Y2D9 606 aa32.42■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms