RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 CHRNA5P30532 468 aa18.85■□□□□ 0.61
SQSTM1-208ENST00000485412 SLC39A6Q13433 755 aa18.85■□□□□ 0.61
SQSTM1-208ENST00000485412 DNAJC10Q8IXB1 793 aa18.85■□□□□ 0.61
SQSTM1-208ENST00000485412 RRAGCQ9HB90 399 aa18.85■□□□□ 0.61
SQSTM1-208ENST00000485412 SLC52A2Q9HAB3 445 aa18.84■□□□□ 0.61
SQSTM1-208ENST00000485412 COL3A1P02461 1466 aaPredicted RBP18.84■□□□□ 0.61
SQSTM1-208ENST00000485412 POLRMTO00411 1230 aaKnown RBP18.83■□□□□ 0.6
SQSTM1-208ENST00000485412 PER1O15534 1290 aaPredicted RBP18.83■□□□□ 0.6
SQSTM1-208ENST00000485412 ZPR1O75312 459 aa18.83■□□□□ 0.6
SQSTM1-208ENST00000485412 AKAP4Q5JQC9 854 aa18.83■□□□□ 0.6
SQSTM1-208ENST00000485412 CC2D1BQ5T0F9 858 aaKnown RBP18.83■□□□□ 0.6
SQSTM1-208ENST00000485412 RNMTO43148 476 aaKnown RBP18.82■□□□□ 0.6
SQSTM1-208ENST00000485412 MTHFSDQ2M296 383 aaKnown RBP18.82■□□□□ 0.6
SQSTM1-208ENST00000485412 SIPA1L3O60292 1781 aaPredicted RBP18.81■□□□□ 0.6
SQSTM1-208ENST00000485412 CNGB1Q14028 1251 aaPredicted RBP18.81■□□□□ 0.6
SQSTM1-208ENST00000485412 USPL1Q5W0Q7 1092 aa18.81■□□□□ 0.6
SQSTM1-208ENST00000485412 NRXN2Q9P2S2 1712 aa18.8■□□□□ 0.6
SQSTM1-208ENST00000485412 SOS1Q07889 1333 aaPredicted RBP18.8■□□□□ 0.6
SQSTM1-208ENST00000485412 CCDC88AQ3V6T2 1871 aa18.8■□□□□ 0.6
SQSTM1-208ENST00000485412 TM4SF1P30408 202 aa18.8■□□□□ 0.6
SQSTM1-208ENST00000485412 JMYQ8N9B5 988 aa18.8■□□□□ 0.6
SQSTM1-208ENST00000485412 SMC1BQ8NDV3 1235 aa18.8■□□□□ 0.6
SQSTM1-208ENST00000485412 DLEC1Q9Y238 1755 aa18.79■□□□□ 0.6
SQSTM1-208ENST00000485412 CYP19A1P11511 503 aaPredicted RBP18.79■□□□□ 0.6
SQSTM1-208ENST00000485412 RASSF7Q02833 373 aa18.79■□□□□ 0.6
SQSTM1-208ENST00000485412 ZC3H4Q9UPT8 1303 aaKnown RBP18.78■□□□□ 0.6
SQSTM1-208ENST00000485412 COL13A1Q5TAT6 717 aaPredicted RBP18.78■□□□□ 0.6
SQSTM1-208ENST00000485412 ZBTB1Q9Y2K1 713 aa18.78■□□□□ 0.6
SQSTM1-208ENST00000485412 TIAM2Q8IVF5 1701 aa18.77■□□□□ 0.6
SQSTM1-208ENST00000485412 DIAPH1O60610 1272 aaKnown RBP18.76■□□□□ 0.59
SQSTM1-208ENST00000485412 NFIXQ14938 502 aa18.76■□□□□ 0.59
SQSTM1-208ENST00000485412 BCL2L12Q9HB09 334 aa18.76■□□□□ 0.59
SQSTM1-208ENST00000485412 NARFQ9UHQ1 456 aa18.76■□□□□ 0.59
SQSTM1-208ENST00000485412 COL15A1P39059 1388 aa18.76■□□□□ 0.59
SQSTM1-208ENST00000485412 ANKRD31Q8N7Z5 1873 aa18.75■□□□□ 0.59
SQSTM1-208ENST00000485412 CAPN15O75808 1086 aa18.75■□□□□ 0.59
SQSTM1-208ENST00000485412 LMNB1P20700 586 aa18.75■□□□□ 0.59
SQSTM1-208ENST00000485412 CARMIL3Q8ND23 1372 aa18.74■□□□□ 0.59
SQSTM1-208ENST00000485412 SCN7AQ01118 1682 aa18.73■□□□□ 0.59
SQSTM1-208ENST00000485412 GLTPD2A6NH11 291 aa18.73■□□□□ 0.59
SQSTM1-208ENST00000485412 SERPINB2P05120 415 aa18.73■□□□□ 0.59
SQSTM1-208ENST00000485412 VEGFAP15692 232 aaPredicted RBP18.73■□□□□ 0.59
SQSTM1-208ENST00000485412 C2CD5Q86YS7 1000 aa18.73■□□□□ 0.59
SQSTM1-208ENST00000485412 TNS4Q8IZW8 715 aa18.73■□□□□ 0.59
SQSTM1-208ENST00000485412 TTLL6Q8N841 843 aa18.73■□□□□ 0.59
SQSTM1-208ENST00000485412 COL11A2P13942 1736 aaPredicted RBP18.72■□□□□ 0.59
SQSTM1-208ENST00000485412 H0YIN7 160 aa18.71■□□□□ 0.59
SQSTM1-208ENST00000485412 CANXP27824 592 aaKnown RBP18.71■□□□□ 0.59
SQSTM1-208ENST00000485412 IL17REQ8NFR9 667 aa18.71■□□□□ 0.59
SQSTM1-208ENST00000485412 U2SURPO15042 1029 aaKnown RBP18.7■□□□□ 0.58
SQSTM1-208ENST00000485412 PRELPP51888 382 aa18.7■□□□□ 0.58
SQSTM1-208ENST00000485412 CACNA1SQ13698 1873 aa18.69■□□□□ 0.58
SQSTM1-208ENST00000485412 BICDL1Q6ZP65 573 aa18.69■□□□□ 0.58
SQSTM1-208ENST00000485412 ZNF496Q96IT1 587 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-208ENST00000485412 NPC1L1Q9UHC9 1359 aa18.68■□□□□ 0.58
SQSTM1-208ENST00000485412 DICER1Q9UPY3 1922 aaKnown RBP18.68■□□□□ 0.58
SQSTM1-208ENST00000485412 VSIG10Q8N0Z9 540 aa18.68■□□□□ 0.58
SQSTM1-208ENST00000485412 BCORQ6W2J9 1755 aa18.68■□□□□ 0.58
SQSTM1-208ENST00000485412 PCNTO95613 3336 aa18.67■□□□□ 0.58
SQSTM1-208ENST00000485412 NFKBIEO00221 500 aa18.67■□□□□ 0.58
SQSTM1-208ENST00000485412 HSPA1AP0DMV8 641 aaKnown RBP18.67■□□□□ 0.58
SQSTM1-208ENST00000485412 HSPA1BP0DMV9 641 aaKnown RBP18.67■□□□□ 0.58
SQSTM1-208ENST00000485412 DPY19L2Q6NUT2 758 aa18.67■□□□□ 0.58
SQSTM1-208ENST00000485412 ZNF622Q969S3 477 aaKnown RBP eCLIP18.67■□□□□ 0.58
SQSTM1-208ENST00000485412 A0A087WZG4 1122 aa18.66■□□□□ 0.58
SQSTM1-208ENST00000485412 KCNQ3O43525 872 aa18.66■□□□□ 0.58
SQSTM1-208ENST00000485412 STARD3NLO95772 234 aa18.66■□□□□ 0.58
SQSTM1-208ENST00000485412 EIF5P55010 431 aaKnown RBP18.66■□□□□ 0.58
SQSTM1-208ENST00000485412 TTC5Q8N0Z6 440 aa18.66■□□□□ 0.58
SQSTM1-208ENST00000485412 PHACTR3Q96KR7 559 aa18.66■□□□□ 0.58
SQSTM1-208ENST00000485412 HEG1Q9ULI3 1381 aa18.66■□□□□ 0.58
SQSTM1-208ENST00000485412 FER1L6Q2WGJ9 1857 aa18.65■□□□□ 0.58
SQSTM1-208ENST00000485412 ZNF790Q6PG37 636 aa18.65■□□□□ 0.58
SQSTM1-208ENST00000485412 CCDC24Q8N4L8 307 aa18.65■□□□□ 0.58
SQSTM1-208ENST00000485412 ZNF219Q9P2Y4 722 aaPredicted RBP18.65■□□□□ 0.58
SQSTM1-208ENST00000485412 GNAT3A8MTJ3 354 aa18.64■□□□□ 0.57
SQSTM1-208ENST00000485412 TBC1D9BQ66K14 1250 aa18.64■□□□□ 0.57
SQSTM1-208ENST00000485412 PDZRN3Q9UPQ7 1066 aa18.64■□□□□ 0.57
SQSTM1-208ENST00000485412 ZNF330Q9Y3S2 320 aaPredicted RBP18.64■□□□□ 0.57
SQSTM1-208ENST00000485412 CEMIPQ8WUJ3 1361 aa18.64■□□□□ 0.57
SQSTM1-208ENST00000485412 PDE6BP35913 854 aa18.63■□□□□ 0.57
SQSTM1-208ENST00000485412 TEFQ10587 303 aa18.63■□□□□ 0.57
SQSTM1-208ENST00000485412 TBC1D2BQ9UPU7 963 aa18.63■□□□□ 0.57
SQSTM1-208ENST00000485412 C21orf2O43822 256 aa18.62■□□□□ 0.57
SQSTM1-208ENST00000485412 A1BGP04217 495 aa18.62■□□□□ 0.57
SQSTM1-208ENST00000485412 PRKAR2BP31323 418 aa18.62■□□□□ 0.57
SQSTM1-208ENST00000485412 PIP4K2AP48426 406 aaPredicted RBP18.62■□□□□ 0.57
SQSTM1-208ENST00000485412 ERFEQ4G0M1 354 aa18.62■□□□□ 0.57
SQSTM1-208ENST00000485412 GAS2L2Q8NHY3 880 aa18.62■□□□□ 0.57
SQSTM1-208ENST00000485412 RSPH6AQ9H0K4 717 aa18.62■□□□□ 0.57
SQSTM1-208ENST00000485412 SLX4Q8IY92 1834 aa18.61■□□□□ 0.57
SQSTM1-208ENST00000485412 PRAMEF22A3QJZ6 481 aa18.61■□□□□ 0.57
SQSTM1-208ENST00000485412 POTECB2RU33 542 aa18.61■□□□□ 0.57
SQSTM1-208ENST00000485412 NPHP1O15259 732 aa18.61■□□□□ 0.57
SQSTM1-208ENST00000485412 BRIP1Q9BX63 1249 aa18.61■□□□□ 0.57
SQSTM1-208ENST00000485412 NPM2Q86SE8 214 aaKnown RBP18.6■□□□□ 0.57
SQSTM1-208ENST00000485412 DLG5Q8TDM6 1919 aa18.59■□□□□ 0.57
SQSTM1-208ENST00000485412 PRR5LQ6MZQ0 368 aa18.59■□□□□ 0.57
SQSTM1-208ENST00000485412 TEX13AQ9BXU3 409 aaPredicted RBP18.59■□□□□ 0.57
SQSTM1-208ENST00000485412 TAOK3Q9H2K8 898 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms