RNA–Protein interactions for RNA: ENST00000481231.5

SMARCE1-210, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 3

Gene SMARCE1, Length 695 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-210ENST00000481231 TTLL6Q8N841 843 aa13.07□□□□□ -0.32
SMARCE1-210ENST00000481231 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.07□□□□□ -0.322e-7■■□□□ 13.8
SMARCE1-210ENST00000481231 DDNO94850 711 aaPredicted RBP13.06□□□□□ -0.32
SMARCE1-210ENST00000481231 RGS19P49795 217 aa13.06□□□□□ -0.32
SMARCE1-210ENST00000481231 TRIM26Q12899 539 aaPredicted RBP13.06□□□□□ -0.32
SMARCE1-210ENST00000481231 ERFEQ4G0M1 354 aa13.06□□□□□ -0.32
SMARCE1-210ENST00000481231 EYA1Q99502 592 aa13.06□□□□□ -0.32
SMARCE1-210ENST00000481231 ZNF219Q9P2Y4 722 aaPredicted RBP13.06□□□□□ -0.32
SMARCE1-210ENST00000481231 KIF20BQ96Q89 1820 aa13.06□□□□□ -0.32
SMARCE1-210ENST00000481231 CARMIL3Q8ND23 1372 aa13.06□□□□□ -0.32
SMARCE1-210ENST00000481231 TMEM88BA6NKF7 163 aa13.05□□□□□ -0.32
SMARCE1-210ENST00000481231 USPL1Q5W0Q7 1092 aa13.05□□□□□ -0.32
SMARCE1-210ENST00000481231 C2CD5Q86YS7 1000 aa13.05□□□□□ -0.32
SMARCE1-210ENST00000481231 ADAMTS7Q9UKP4 1686 aa13.05□□□□□ -0.32
SMARCE1-210ENST00000481231 DLEC1Q9Y238 1755 aa13.04□□□□□ -0.32
SMARCE1-210ENST00000481231 VIRMAQ69YN4 1812 aaKnown RBP13.04□□□□□ -0.32
SMARCE1-210ENST00000481231 NFIXQ14938 502 aa13.04□□□□□ -0.32
SMARCE1-210ENST00000481231 CFAP44Q96MT7 982 aa13.04□□□□□ -0.32
SMARCE1-210ENST00000481231 WASHC2AQ641Q2 1341 aa13.04□□□□□ -0.32
SMARCE1-210ENST00000481231 ERVV-2B6SEH9 535 aa13.03□□□□□ -0.32
SMARCE1-210ENST00000481231 LDHDQ86WU2 507 aa13.03□□□□□ -0.32
SMARCE1-210ENST00000481231 CCDC88AQ3V6T2 1871 aa13.03□□□□□ -0.32
SMARCE1-210ENST00000481231 TJP1Q07157 1748 aa13.02□□□□□ -0.32
SMARCE1-210ENST00000481231 C21orf2O43822 256 aa13.02□□□□□ -0.33
SMARCE1-210ENST00000481231 ZPR1O75312 459 aa13.02□□□□□ -0.33
SMARCE1-210ENST00000481231 ITGBL1O95965 494 aaPredicted RBP13.02□□□□□ -0.33
SMARCE1-210ENST00000481231 INTS5Q6P9B9 1019 aaKnown RBP13.02□□□□□ -0.33
SMARCE1-210ENST00000481231 NRXN2Q9P2S2 1712 aa13.02□□□□□ -0.33
SMARCE1-210ENST00000481231 AFDNP55196 1824 aaKnown RBP13.02□□□□□ -0.33
SMARCE1-210ENST00000481231 RASSF10A6NK89 507 aa13.01□□□□□ -0.33
SMARCE1-210ENST00000481231 SERPINB2P05120 415 aa13.01□□□□□ -0.33
SMARCE1-210ENST00000481231 CABP4P57796 275 aa13.01□□□□□ -0.33
SMARCE1-210ENST00000481231 EAPPQ56P03 285 aaPredicted RBP13.01□□□□□ -0.33
SMARCE1-210ENST00000481231 POLKQ9UBT6 870 aa13.01□□□□□ -0.33
SMARCE1-210ENST00000481231 WDR33Q9C0J8 1336 aaKnown RBP13.01□□□□□ -0.33
SMARCE1-210ENST00000481231 TNRC18O15417 2968 aaPredicted RBP13□□□□□ -0.33
SMARCE1-210ENST00000481231 H0YIN7 160 aa13□□□□□ -0.33
SMARCE1-210ENST00000481231 MAP2K1Q02750 393 aaPredicted RBP13□□□□□ -0.33
SMARCE1-210ENST00000481231 TAF1DQ9H5J8 278 aaPredicted RBP13□□□□□ -0.33
SMARCE1-210ENST00000481231 TSKSQ9UJT2 592 aa13□□□□□ -0.33
SMARCE1-210ENST00000481231 TIMELESSQ9UNS1 1208 aa13□□□□□ -0.33
SMARCE1-210ENST00000481231 ANKRD26Q9UPS8 1709 aa12.99□□□□□ -0.33
SMARCE1-210ENST00000481231 SOS1Q07889 1333 aaPredicted RBP12.99□□□□□ -0.33
SMARCE1-210ENST00000481231 IQCA1LA6NCM1 817 aa12.99□□□□□ -0.33
SMARCE1-210ENST00000481231 TNNT2P45379 298 aaPredicted RBP12.99□□□□□ -0.33
SMARCE1-210ENST00000481231 DEFB115Q30KQ5 88 aa12.99□□□□□ -0.33
SMARCE1-210ENST00000481231 ZNF622Q969S3 477 aaKnown RBP eCLIP12.99□□□□□ -0.33
SMARCE1-210ENST00000481231 POLR3GLQ9BT43 218 aa12.99□□□□□ -0.33
SMARCE1-210ENST00000481231 BCL2L12Q9HB09 334 aa12.99□□□□□ -0.33
SMARCE1-210ENST00000481231 EIF4A2Q14240 407 aaKnown RBP12.98□□□□□ -0.33
SMARCE1-210ENST00000481231 TAOK3Q9H2K8 898 aa12.98□□□□□ -0.33
SMARCE1-210ENST00000481231 ABT1Q9ULW3 272 aaKnown RBP12.98□□□□□ -0.33
SMARCE1-210ENST00000481231 COL15A1P39059 1388 aa12.97□□□□□ -0.33
SMARCE1-210ENST00000481231 HSP90AB1P08238 724 aaKnown RBP12.97□□□□□ -0.33
SMARCE1-210ENST00000481231 GRM1Q13255 1194 aa12.97□□□□□ -0.33
SMARCE1-210ENST00000481231 MAP1SQ66K74 1059 aaPredicted RBP12.97□□□□□ -0.33
SMARCE1-210ENST00000481231 ZNF530Q6P9A1 599 aaPredicted RBP12.97□□□□□ -0.33
SMARCE1-210ENST00000481231 BICDL1Q6ZP65 573 aa12.97□□□□□ -0.33
SMARCE1-210ENST00000481231 DNAJC10Q8IXB1 793 aa12.97□□□□□ -0.33
SMARCE1-210ENST00000481231 CCDC24Q8N4L8 307 aa12.97□□□□□ -0.33
SMARCE1-210ENST00000481231 L3MBTL3Q96JM7 780 aaPredicted RBP12.97□□□□□ -0.33
SMARCE1-210ENST00000481231 CLEC11AQ9Y240 323 aa12.97□□□□□ -0.33
SMARCE1-210ENST00000481231 COL11A2P13942 1736 aaPredicted RBP12.96□□□□□ -0.33
SMARCE1-210ENST00000481231 DICER1Q9UPY3 1922 aaKnown RBP12.96□□□□□ -0.33
SMARCE1-210ENST00000481231 THSD7BQ9C0I4 1608 aa12.96□□□□□ -0.33
SMARCE1-210ENST00000481231 LTBP3Q9NS15 1303 aa12.96□□□□□ -0.33
SMARCE1-210ENST00000481231 FER1L6Q2WGJ9 1857 aa12.96□□□□□ -0.33
SMARCE1-210ENST00000481231 PAXIP1Q6ZW49 1069 aaPredicted RBP12.96□□□□□ -0.33
SMARCE1-210ENST00000481231 NFATC2IPQ8NCF5 419 aa12.96□□□□□ -0.33
SMARCE1-210ENST00000481231 MCOLN1Q9GZU1 580 aa12.96□□□□□ -0.33
SMARCE1-210ENST00000481231 NARFQ9UHQ1 456 aa12.96□□□□□ -0.33
SMARCE1-210ENST00000481231 ZNF541Q9H0D2 1346 aa12.95□□□□□ -0.34
SMARCE1-210ENST00000481231 CLSPNQ9HAW4 1339 aa12.95□□□□□ -0.34
SMARCE1-210ENST00000481231 ADAMTSL1Q8N6G6 1762 aa12.95□□□□□ -0.34
SMARCE1-210ENST00000481231 ZBTB1Q9Y2K1 713 aa12.95□□□□□ -0.34
SMARCE1-210ENST00000481231 LTBP1Q14766 1721 aa12.94□□□□□ -0.34
SMARCE1-210ENST00000481231 MTHFSP49914 203 aa12.94□□□□□ -0.34
SMARCE1-210ENST00000481231 FMR1Q06787 632 aaKnown RBP eCLIP12.94□□□□□ -0.34
SMARCE1-210ENST00000481231 CNTROBQ8N137 903 aa12.94□□□□□ -0.34
SMARCE1-210ENST00000481231 CAPNS2Q96L46 248 aa12.94□□□□□ -0.34
SMARCE1-210ENST00000481231 BEGAINQ9BUH8 593 aa12.94□□□□□ -0.34
SMARCE1-210ENST00000481231 HACL1Q9UJ83 578 aa12.94□□□□□ -0.34
SMARCE1-210ENST00000481231 ANKRD31Q8N7Z5 1873 aa12.93□□□□□ -0.34
SMARCE1-210ENST00000481231 RNF123Q5XPI4 1314 aa12.93□□□□□ -0.34
SMARCE1-210ENST00000481231 CYP19A1P11511 503 aaPredicted RBP12.93□□□□□ -0.34
SMARCE1-210ENST00000481231 EPHX2P34913 555 aa12.93□□□□□ -0.34
SMARCE1-210ENST00000481231 PLEKHO1Q53GL0 409 aaPredicted RBP12.93□□□□□ -0.34
SMARCE1-210ENST00000481231 CYP4F22Q6NT55 531 aa12.93□□□□□ -0.34
SMARCE1-210ENST00000481231 PCGF6Q9BYE7 350 aa12.93□□□□□ -0.34
SMARCE1-210ENST00000481231 SCN4AP35499 1836 aa12.92□□□□□ -0.34
SMARCE1-210ENST00000481231 PRPF40BQ6NWY9 871 aaKnown RBP12.92□□□□□ -0.34
SMARCE1-210ENST00000481231 GPR101Q96P66 508 aaPredicted RBP12.92□□□□□ -0.34
SMARCE1-210ENST00000481231 PANK3Q9H999 370 aa12.92□□□□□ -0.34
SMARCE1-210ENST00000481231 HSPA5P11021 654 aaKnown RBP12.91□□□□□ -0.34
SMARCE1-210ENST00000481231 PDE6BP35913 854 aa12.91□□□□□ -0.34
SMARCE1-210ENST00000481231 EIF4G2P78344 907 aaKnown RBP eCLIP12.91□□□□□ -0.34
SMARCE1-210ENST00000481231 C1orf141Q5JVX7 400 aa12.91□□□□□ -0.34
SMARCE1-210ENST00000481231 TBC1D9BQ66K14 1250 aa12.91□□□□□ -0.34
SMARCE1-210ENST00000481231 PRR5LQ6MZQ0 368 aa12.91□□□□□ -0.34
SMARCE1-210ENST00000481231 DDX21Q9NR30 783 aaKnown RBP eCLIP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms