RNA–Protein interactions for RNA: ENST00000481194.1

CCM2-214, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 5,304 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-214ENST00000481194 IFFO2Q5TF58 517 aa23.23■■□□□ 1.31
CCM2-214ENST00000481194 XAGE3Q8WTP9 111 aa23.23■■□□□ 1.31
CCM2-214ENST00000481194 L1TD1Q5T7N2 865 aaKnown RBP23.22■■□□□ 1.31
CCM2-214ENST00000481194 ZBTB3Q9H5J0 574 aa23.22■■□□□ 1.31
CCM2-214ENST00000481194 ATP6V1AP38606 617 aa23.22■■□□□ 1.31
CCM2-214ENST00000481194 ERVV-2B6SEH9 535 aa23.22■■□□□ 1.31
CCM2-214ENST00000481194 USP31Q70CQ4 1352 aa23.21■■□□□ 1.31
CCM2-214ENST00000481194 EXOC6BQ9Y2D4 811 aa23.21■■□□□ 1.31
CCM2-214ENST00000481194 MROH2AA6NES4 1674 aa23.21■■□□□ 1.31
CCM2-214ENST00000481194 METTL24Q5JXM2 366 aa23.21■■□□□ 1.31
CCM2-214ENST00000481194 SLC3A2P08195 630 aaKnown RBP23.21■■□□□ 1.31
CCM2-214ENST00000481194 ZNF790Q6PG37 636 aa23.2■■□□□ 1.31
CCM2-214ENST00000481194 BICDL1Q6ZP65 573 aa23.2■■□□□ 1.3
CCM2-214ENST00000481194 LINS1Q8NG48 757 aa23.2■■□□□ 1.3
CCM2-214ENST00000481194 PLEKHF1Q96S99 279 aa23.2■■□□□ 1.3
CCM2-214ENST00000481194 BACH2Q9BYV9 841 aa23.2■■□□□ 1.3
CCM2-214ENST00000481194 DDX21Q9NR30 783 aaKnown RBP eCLIP23.2■■□□□ 1.3
CCM2-214ENST00000481194 COPS6Q7L5N1 327 aa23.19■■□□□ 1.3
CCM2-214ENST00000481194 PTMAP06454 111 aaKnown RBP23.19■■□□□ 1.3
CCM2-214ENST00000481194 IFIT1P09914 478 aaKnown RBP23.19■■□□□ 1.3
CCM2-214ENST00000481194 IL1RAPL2Q9NP60 686 aa23.18■■□□□ 1.3
CCM2-214ENST00000481194 CPLX1O14810 134 aa23.18■■□□□ 1.3
CCM2-214ENST00000481194 TSPYL6Q8N831 410 aa23.18■■□□□ 1.3
CCM2-214ENST00000481194 ADGRB1O14514 1584 aa23.18■■□□□ 1.3
CCM2-214ENST00000481194 NACAP1Q9BZK3 213 aa23.18■■□□□ 1.3
CCM2-214ENST00000481194 SPATA31A3Q5VYP0 1347 aa23.17■■□□□ 1.3
CCM2-214ENST00000481194 CARD10Q9BWT7 1032 aa23.17■■□□□ 1.3
CCM2-214ENST00000481194 POLR1AO95602 1720 aaPredicted RBP23.17■■□□□ 1.3
CCM2-214ENST00000481194 NCOA3Q9Y6Q9 1424 aa23.17■■□□□ 1.3
CCM2-214ENST00000481194 TRIM29Q14134 588 aa23.17■■□□□ 1.3
CCM2-214ENST00000481194 BRINP3Q76B58 766 aa23.17■■□□□ 1.3
CCM2-214ENST00000481194 CDC5LQ99459 802 aaKnown RBP23.17■■□□□ 1.3
CCM2-214ENST00000481194 SART3Q15020 963 aaKnown RBP23.16■■□□□ 1.3
CCM2-214ENST00000481194 ANKRD44Q8N8A2 993 aa23.16■■□□□ 1.3
CCM2-214ENST00000481194 FOXD4L1Q9NU39 408 aa23.16■■□□□ 1.3
CCM2-214ENST00000481194 CPSF1Q10570 1443 aaKnown RBP23.16■■□□□ 1.3
CCM2-214ENST00000481194 TNS3Q68CZ2 1445 aa23.16■■□□□ 1.3
CCM2-214ENST00000481194 CHMP5Q9NZZ3 219 aa23.16■■□□□ 1.3
CCM2-214ENST00000481194 GRM8O00222 908 aa23.16■■□□□ 1.3
CCM2-214ENST00000481194 ACSBG1Q96GR2 724 aa23.16■■□□□ 1.3
CCM2-214ENST00000481194 NUCB2P80303 420 aa23.16■■□□□ 1.3
CCM2-214ENST00000481194 CDK11BP21127 795 aaKnown RBP23.15■■□□□ 1.3
CCM2-214ENST00000481194 RFC4P35249 363 aa23.15■■□□□ 1.3
CCM2-214ENST00000481194 NFXL1Q6ZNB6 911 aa23.15■■□□□ 1.3
CCM2-214ENST00000481194 SLC5A1P13866 664 aa23.15■■□□□ 1.3
CCM2-214ENST00000481194 CTNNA3Q9UI47 895 aa23.14■■□□□ 1.3
CCM2-214ENST00000481194 PHKG2P15735 406 aa23.14■■□□□ 1.29
CCM2-214ENST00000481194 PHF14O94880 888 aa23.14■■□□□ 1.29
CCM2-214ENST00000481194 SKOR2Q2VWA4 1001 aaPredicted RBP23.13■■□□□ 1.29
CCM2-214ENST00000481194 UBE3BQ7Z3V4 1068 aa23.13■■□□□ 1.29
CCM2-214ENST00000481194 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.13■■□□□ 1.29
CCM2-214ENST00000481194 ATP8B2P98198 1209 aa23.13■■□□□ 1.29
CCM2-214ENST00000481194 WDR17Q8IZU2 1322 aa23.13■■□□□ 1.29
CCM2-214ENST00000481194 CAVIN4Q5BKX8 364 aa23.13■■□□□ 1.29
CCM2-214ENST00000481194 SMC3Q9UQE7 1217 aa23.13■■□□□ 1.29
CCM2-214ENST00000481194 SLIT1O75093 1534 aa23.13■■□□□ 1.29
CCM2-214ENST00000481194 ANKRD1Q15327 319 aa23.12■■□□□ 1.29
CCM2-214ENST00000481194 NRDCO43847 1150 aa23.12■■□□□ 1.29
CCM2-214ENST00000481194 NUTM1Q86Y26 1132 aa23.12■■□□□ 1.29
CCM2-214ENST00000481194 KLHL34Q8N239 644 aa23.12■■□□□ 1.29
CCM2-214ENST00000481194 NYXQ9GZU5 481 aa23.12■■□□□ 1.29
CCM2-214ENST00000481194 CCDC152Q4G0S7 254 aa23.12■■□□□ 1.29
CCM2-214ENST00000481194 USP21Q9UK80 565 aa23.12■■□□□ 1.29
CCM2-214ENST00000481194 ATP5J2-PTCD1G3V325 749 aa23.11■■□□□ 1.29
CCM2-214ENST00000481194 GPTP24298 496 aa23.11■■□□□ 1.29
CCM2-214ENST00000481194 RPGRQ92834 1020 aaKnown RBP23.11■■□□□ 1.29
CCM2-214ENST00000481194 C1orf167Q5SNV9 1468 aa23.11■■□□□ 1.29
CCM2-214ENST00000481194 KRT32Q14532 448 aa23.11■■□□□ 1.29
CCM2-214ENST00000481194 MEIS3Q99687 375 aa23.11■■□□□ 1.29
CCM2-214ENST00000481194 SPINK5Q9NQ38 1064 aaPredicted RBP23.11■■□□□ 1.29
CCM2-214ENST00000481194 ANXA1P04083 346 aa23.11■■□□□ 1.29
CCM2-214ENST00000481194 LGR6Q9HBX8 967 aa23.1■■□□□ 1.29
CCM2-214ENST00000481194 ERBB3P21860 1342 aa23.1■■□□□ 1.29
CCM2-214ENST00000481194 NUCB1Q02818 461 aa23.1■■□□□ 1.29
CCM2-214ENST00000481194 ST5P78524 1137 aa23.1■■□□□ 1.29
CCM2-214ENST00000481194 FKBP4Q02790 459 aaKnown RBP eCLIP23.1■■□□□ 1.29
CCM2-214ENST00000481194 DZIP3Q86Y13 1208 aaKnown RBP23.1■■□□□ 1.29
CCM2-214ENST00000481194 EIF4A1P60842 406 aaKnown RBP23.09■■□□□ 1.29
CCM2-214ENST00000481194 PLBD2Q8NHP8 589 aa23.09■■□□□ 1.29
CCM2-214ENST00000481194 IL27Q8NEV9 243 aa23.09■■□□□ 1.29
CCM2-214ENST00000481194 NCAPD2Q15021 1401 aa23.09■■□□□ 1.29
CCM2-214ENST00000481194 SF3A1Q15459 793 aaKnown RBP23.09■■□□□ 1.29
CCM2-214ENST00000481194 ERBB4Q15303 1308 aa23.09■■□□□ 1.29
CCM2-214ENST00000481194 ECHDC1Q9NTX5 307 aa23.08■■□□□ 1.29
CCM2-214ENST00000481194 BMP2KLQ5H9B9 411 aa23.08■■□□□ 1.29
CCM2-214ENST00000481194 UTP14AQ9BVJ6 771 aaKnown RBP23.07■■□□□ 1.28
CCM2-214ENST00000481194 ANO8Q9HCE9 1232 aaPredicted RBP23.07■■□□□ 1.28
CCM2-214ENST00000481194 CYP46A1Q9Y6A2 500 aa23.07■■□□□ 1.28
CCM2-214ENST00000481194 DHX16O60231 1041 aaKnown RBP23.07■■□□□ 1.28
CCM2-214ENST00000481194 RTCBQ9Y3I0 505 aaKnown RBP23.07■■□□□ 1.28
CCM2-214ENST00000481194 CPS1P31327 1500 aa23.07■■□□□ 1.28
CCM2-214ENST00000481194 SMARCA5O60264 1052 aaPredicted RBP23.06■■□□□ 1.28
CCM2-214ENST00000481194 CCDC85AQ96PX6 553 aaPredicted RBP23.06■■□□□ 1.28
CCM2-214ENST00000481194 ZBTB40Q9NUA8 1239 aa23.06■■□□□ 1.28
CCM2-214ENST00000481194 EVI5LQ96CN4 794 aa23.06■■□□□ 1.28
CCM2-214ENST00000481194 DDX46Q7L014 1031 aaKnown RBP23.06■■□□□ 1.28
CCM2-214ENST00000481194 SETDB2Q96T68 719 aa23.06■■□□□ 1.28
CCM2-214ENST00000481194 KRT24Q2M2I5 525 aa23.06■■□□□ 1.28
CCM2-214ENST00000481194 TTF1Q15361 905 aaPredicted RBP23.06■■□□□ 1.28
CCM2-214ENST00000481194 NBPF5PQ86XG9 351 aaPredicted RBP23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms