RNA–Protein interactions for RNA: ENST00000480956.1

LSM5-210, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM5, Length 1,736 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-210ENST00000480956 GPATCH11Q8N954 259 aa10.72□□□□□ -0.69
LSM5-210ENST00000480956 SLKQ9H2G2 1235 aaPredicted RBP10.72□□□□□ -0.69
LSM5-210ENST00000480956 GEMIN8Q9NWZ8 242 aaKnown RBP10.72□□□□□ -0.69
LSM5-210ENST00000480956 PLEKHG4Q58EX7 1191 aa10.71□□□□□ -0.69
LSM5-210ENST00000480956 NBPF6Q5VWK0 638 aa10.71□□□□□ -0.69
LSM5-210ENST00000480956 CAPN12Q6ZSI9 719 aa10.71□□□□□ -0.69
LSM5-210ENST00000480956 USP48Q86UV5 1035 aa10.71□□□□□ -0.69
LSM5-210ENST00000480956 PRPF38AQ8NAV1 312 aaKnown RBP10.71□□□□□ -0.69
LSM5-210ENST00000480956 NBPF4Q96M43 638 aa10.71□□□□□ -0.69
LSM5-210ENST00000480956 CITED4Q96RK1 184 aa10.71□□□□□ -0.69
LSM5-210ENST00000480956 TMX1Q9H3N1 280 aa10.71□□□□□ -0.69
LSM5-210ENST00000480956 TYW1Q9NV66 732 aaKnown RBP10.71□□□□□ -0.69
LSM5-210ENST00000480956 FKBPLQ9UIM3 349 aa10.71□□□□□ -0.69
LSM5-210ENST00000480956 AMPD3Q01432 767 aa10.7□□□□□ -0.7
LSM5-210ENST00000480956 DMRTB1Q96MA1 342 aa10.7□□□□□ -0.7
LSM5-210ENST00000480956 FRMD6Q96NE9 622 aa10.7□□□□□ -0.7
LSM5-210ENST00000480956 MAF1Q9H063 256 aa10.7□□□□□ -0.7
LSM5-210ENST00000480956 ZBTB7BO15156 539 aaPredicted RBP10.7□□□□□ -0.7
LSM5-210ENST00000480956 NPR3P17342 541 aa10.7□□□□□ -0.7
LSM5-210ENST00000480956 ODR4Q5SWX8 454 aa10.7□□□□□ -0.7
LSM5-210ENST00000480956 RNPC3Q96LT9 517 aaKnown RBP10.7□□□□□ -0.7
LSM5-210ENST00000480956 HINFPQ9BQA5 517 aa10.7□□□□□ -0.7
LSM5-210ENST00000480956 PNMA2Q9UL42 364 aa10.7□□□□□ -0.7
LSM5-210ENST00000480956 WWC3Q9ULE0 1092 aa10.7□□□□□ -0.7
LSM5-210ENST00000480956 NBPF26B4DH59 902 aa10.69□□□□□ -0.7
LSM5-210ENST00000480956 LGR5O75473 907 aa10.69□□□□□ -0.7
LSM5-210ENST00000480956 FAM98CQ17RN3 349 aaKnown RBP10.69□□□□□ -0.7
LSM5-210ENST00000480956 CCDC102BQ68D86 513 aa10.69□□□□□ -0.7
LSM5-210ENST00000480956 TRAF7Q6Q0C0 670 aa10.69□□□□□ -0.7
LSM5-210ENST00000480956 MRPL50Q8N5N7 158 aaKnown RBP10.69□□□□□ -0.7
LSM5-210ENST00000480956 MKL1Q969V6 931 aa10.69□□□□□ -0.7
LSM5-210ENST00000480956 ZFRQ96KR1 1074 aaKnown RBP10.69□□□□□ -0.7
LSM5-210ENST00000480956 SFI1A8K8P3 1242 aa10.68□□□□□ -0.7
LSM5-210ENST00000480956 MMRN1Q13201 1228 aa10.68□□□□□ -0.7
LSM5-210ENST00000480956 SERINC3Q13530 473 aa10.68□□□□□ -0.7
LSM5-210ENST00000480956 CHIC2Q9UKJ5 165 aa10.68□□□□□ -0.7
LSM5-210ENST00000480956 ATF4P18848 351 aaPredicted RBP10.67□□□□□ -0.7
LSM5-210ENST00000480956 FKBP5Q13451 457 aaPredicted RBP10.67□□□□□ -0.7
LSM5-210ENST00000480956 LAPTM4BQ86VI4 370 aa10.67□□□□□ -0.7
LSM5-210ENST00000480956 TPCN2Q8NHX9 752 aa10.67□□□□□ -0.7
LSM5-210ENST00000480956 SYMPKQ92797 1274 aaKnown RBP10.67□□□□□ -0.7
LSM5-210ENST00000480956 CRELD1Q96HD1 420 aa10.67□□□□□ -0.7
LSM5-210ENST00000480956 NBPF3Q9H094 633 aa10.67□□□□□ -0.7
LSM5-210ENST00000480956 GRIPAP1Q4V328 841 aa10.67□□□□□ -0.7
LSM5-210ENST00000480956 PPARGC1BQ86YN6 1023 aaKnown RBP10.67□□□□□ -0.7
LSM5-210ENST00000480956 GTF2IP78347 998 aa10.66□□□□□ -0.7
LSM5-210ENST00000480956 NAA30Q147X3 362 aaPredicted RBP10.66□□□□□ -0.7
LSM5-210ENST00000480956 PNISRQ8TF01 805 aaKnown RBP10.66□□□□□ -0.7
LSM5-210ENST00000480956 SRPK1Q96SB4 655 aaKnown RBP10.66□□□□□ -0.7
LSM5-210ENST00000480956 C8orf48Q96LL4 319 aa10.65□□□□□ -0.7
LSM5-210ENST00000480956 MPSTP25325 297 aa10.64□□□□□ -0.71
LSM5-210ENST00000480956 WEE1P30291 646 aa10.64□□□□□ -0.71
LSM5-210ENST00000480956 GJA8P48165 433 aa10.64□□□□□ -0.71
LSM5-210ENST00000480956 ENOX2Q16206 610 aaKnown RBP10.64□□□□□ -0.71
LSM5-210ENST00000480956 SETDB2Q96T68 719 aa10.64□□□□□ -0.71
LSM5-210ENST00000480956 TTF2Q9UNY4 1162 aaKnown RBP10.64□□□□□ -0.71
LSM5-210ENST00000480956 GIGYF1O75420 1035 aaPredicted RBP10.64□□□□□ -0.71
LSM5-210ENST00000480956 GNA15P30679 374 aa10.64□□□□□ -0.71
LSM5-210ENST00000480956 FOXD4Q12950 439 aaPredicted RBP10.64□□□□□ -0.71
LSM5-210ENST00000480956 SAMD7Q7Z3H4 446 aa10.64□□□□□ -0.71
LSM5-210ENST00000480956 C11orf96Q7Z7L8 435 aa10.64□□□□□ -0.71
LSM5-210ENST00000480956 COL26A1Q96A83 441 aa10.64□□□□□ -0.71
LSM5-210ENST00000480956 PCGF6Q9BYE7 350 aa10.64□□□□□ -0.71
LSM5-210ENST00000480956 SRA1Q9HD15 236 aaKnown RBP10.64□□□□□ -0.71
LSM5-210ENST00000480956 GNL3LQ9NVN8 582 aaKnown RBP10.64□□□□□ -0.71
LSM5-210ENST00000480956 TCEAL9Q9UHQ7 104 aa10.64□□□□□ -0.71
LSM5-210ENST00000480956 PCDHB9Q9Y5E1 797 aa10.64□□□□□ -0.71
LSM5-210ENST00000480956 WDHD1O75717 1129 aaPredicted RBP10.63□□□□□ -0.71
LSM5-210ENST00000480956 ALG1LQ6GMV1 187 aa10.63□□□□□ -0.71
LSM5-210ENST00000480956 DESI1Q6ICB0 168 aa10.63□□□□□ -0.71
LSM5-210ENST00000480956 HS2ST1Q7LGA3 356 aa10.63□□□□□ -0.71
LSM5-210ENST00000480956 CEP89Q96ST8 783 aa10.63□□□□□ -0.71
LSM5-210ENST00000480956 BSDC1Q9NW68 430 aaPredicted RBP10.63□□□□□ -0.71
LSM5-210ENST00000480956 CDC45O75419 566 aa10.62□□□□□ -0.71
LSM5-210ENST00000480956 SWT1Q5T5J6 900 aaKnown RBP10.62□□□□□ -0.71
LSM5-210ENST00000480956 CLEC4GQ6UXB4 293 aa10.62□□□□□ -0.71
LSM5-210ENST00000480956 FERMT3Q86UX7 667 aa10.62□□□□□ -0.71
LSM5-210ENST00000480956 BCAMP50895 628 aa10.61□□□□□ -0.71
LSM5-210ENST00000480956 CCSAPQ6IQ19 270 aaPredicted RBP10.61□□□□□ -0.71
LSM5-210ENST00000480956 KCTD12Q96CX2 325 aaKnown RBP10.61□□□□□ -0.71
LSM5-210ENST00000480956 PURBQ96QR8 312 aaKnown RBP10.61□□□□□ -0.71
LSM5-210ENST00000480956 IER2Q9BTL4 223 aa10.61□□□□□ -0.71
LSM5-210ENST00000480956 CHMP4BP1P59074 171 aa10.61□□□□□ -0.71
LSM5-210ENST00000480956 LYPD8Q6UX82 237 aa10.61□□□□□ -0.71
LSM5-210ENST00000480956 NAP1L5Q96NT1 182 aaPredicted RBP10.61□□□□□ -0.71
LSM5-210ENST00000480956 SIRPGQ9P1W8 387 aa10.61□□□□□ -0.71
LSM5-210ENST00000480956 GPR182O15218 404 aa10.6□□□□□ -0.71
LSM5-210ENST00000480956 IGHA2P01877 340 aa10.6□□□□□ -0.71
LSM5-210ENST00000480956 CTSHP09668 335 aa10.6□□□□□ -0.71
LSM5-210ENST00000480956 OS9Q13438 667 aaPredicted RBP10.6□□□□□ -0.71
LSM5-210ENST00000480956 AAMPQ13685 434 aa10.6□□□□□ -0.71
LSM5-210ENST00000480956 UBE4AQ14139 1066 aa10.6□□□□□ -0.71
LSM5-210ENST00000480956 TSGA10IPQ3SY00 556 aa10.6□□□□□ -0.71
LSM5-210ENST00000480956 RETREG3Q86VR2 466 aa10.6□□□□□ -0.71
LSM5-210ENST00000480956 FAM9BQ8IZU0 186 aa10.6□□□□□ -0.71
LSM5-210ENST00000480956 WNT2BQ93097 391 aa10.6□□□□□ -0.71
LSM5-210ENST00000480956 ALKBH8Q96BT7 664 aaKnown RBP10.6□□□□□ -0.71
LSM5-210ENST00000480956 DOLKQ9UPQ8 538 aa10.6□□□□□ -0.71
LSM5-210ENST00000480956 COMMD10Q9Y6G5 202 aa10.6□□□□□ -0.71
LSM5-210ENST00000480956 PNMA6FA0A0J9YX94 578 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms