RNA–Protein interactions for RNA: ENST00000480102.1

PTCD3-213, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-213ENST00000480102 PXDNQ92626 1479 aa6.97□□□□□ -1.29
PTCD3-213ENST00000480102 CENPJQ9HC77 1338 aaPredicted RBP6.97□□□□□ -1.29
PTCD3-213ENST00000480102 TULP4Q9NRJ4 1543 aa6.96□□□□□ -1.29
PTCD3-213ENST00000480102 JUNDP17535 347 aa6.96□□□□□ -1.3
PTCD3-213ENST00000480102 ESCO1Q5FWF5 840 aa6.96□□□□□ -1.3
PTCD3-213ENST00000480102 RIC3Q7Z5B4 369 aa6.96□□□□□ -1.3
PTCD3-213ENST00000480102 ORAI2Q96SN7 254 aa6.96□□□□□ -1.3
PTCD3-213ENST00000480102 SIN3AQ96ST3 1273 aa6.96□□□□□ -1.3
PTCD3-213ENST00000480102 TRAK1Q9UPV9 953 aa6.96□□□□□ -1.3
PTCD3-213ENST00000480102 SPATA31A3Q5VYP0 1347 aa6.96□□□□□ -1.3
PTCD3-213ENST00000480102 NALCNQ8IZF0 1738 aa6.96□□□□□ -1.3
PTCD3-213ENST00000480102 ARHGEF10O15013 1369 aa6.95□□□□□ -1.3
PTCD3-213ENST00000480102 ROCK2O75116 1388 aaKnown RBP6.95□□□□□ -1.3
PTCD3-213ENST00000480102 PNPLA6Q8IY17 1366 aa6.95□□□□□ -1.3
PTCD3-213ENST00000480102 NINLQ9Y2I6 1382 aa6.95□□□□□ -1.3
PTCD3-213ENST00000480102 NHSL1Q5SYE7 1610 aa6.95□□□□□ -1.3
PTCD3-213ENST00000480102 SPDYE5A6NIY4 337 aa6.95□□□□□ -1.3
PTCD3-213ENST00000480102 RPIAP49247 311 aa6.95□□□□□ -1.3
PTCD3-213ENST00000480102 NBPF1Q3BBV0 1214 aa6.95□□□□□ -1.3
PTCD3-213ENST00000480102 ZNF598Q86UK7 904 aaKnown RBP6.95□□□□□ -1.3
PTCD3-213ENST00000480102 FNBP4Q8N3X1 1017 aaPredicted RBP6.95□□□□□ -1.3
PTCD3-213ENST00000480102 ATP7BP35670 1465 aa6.95□□□□□ -1.3
PTCD3-213ENST00000480102 TUSC1Q2TAM9 212 aa6.94□□□□□ -1.3
PTCD3-213ENST00000480102 ZNF697Q5TEC3 545 aa6.94□□□□□ -1.3
PTCD3-213ENST00000480102 PRPF38BQ5VTL8 546 aaKnown RBP6.94□□□□□ -1.3
PTCD3-213ENST00000480102 ZNF772Q68DY9 489 aaPredicted RBP6.94□□□□□ -1.3
PTCD3-213ENST00000480102 DDRGK1Q96HY6 314 aa6.94□□□□□ -1.3
PTCD3-213ENST00000480102 LIMD1Q9UGP4 676 aa6.94□□□□□ -1.3
PTCD3-213ENST00000480102 PCDHB15Q9Y5E8 787 aa6.94□□□□□ -1.3
PTCD3-213ENST00000480102 MED1Q15648 1581 aaPredicted RBP6.94□□□□□ -1.3
PTCD3-213ENST00000480102 ATAD2Q6PL18 1390 aa6.94□□□□□ -1.3
PTCD3-213ENST00000480102 DISP3Q9P2K9 1392 aa6.94□□□□□ -1.3
PTCD3-213ENST00000480102 KIF1AQ12756 1690 aa6.93□□□□□ -1.3
PTCD3-213ENST00000480102 CDK12Q9NYV4 1490 aaPredicted RBP6.93□□□□□ -1.3
PTCD3-213ENST00000480102 FOXO3O43524 673 aa6.93□□□□□ -1.3
PTCD3-213ENST00000480102 LAPTM4AQ15012 233 aa6.93□□□□□ -1.3
PTCD3-213ENST00000480102 NBPF8Q3BBV2 869 aa6.93□□□□□ -1.3
PTCD3-213ENST00000480102 PRR7Q8TB68 274 aa6.93□□□□□ -1.3
PTCD3-213ENST00000480102 NUDT16Q96DE0 195 aaKnown RBP6.93□□□□□ -1.3
PTCD3-213ENST00000480102 FAM117AQ9C073 453 aa6.93□□□□□ -1.3
PTCD3-213ENST00000480102 RSPH6AQ9H0K4 717 aa6.93□□□□□ -1.3
PTCD3-213ENST00000480102 ZBTB3Q9H5J0 574 aa6.93□□□□□ -1.3
PTCD3-213ENST00000480102 EVC2Q86UK5 1308 aa6.93□□□□□ -1.3
PTCD3-213ENST00000480102 PRR36Q9H6K5 1346 aa6.93□□□□□ -1.3
PTCD3-213ENST00000480102 SHPRHQ149N8 1683 aa6.93□□□□□ -1.3
PTCD3-213ENST00000480102 TNS3Q68CZ2 1445 aa6.93□□□□□ -1.3
PTCD3-213ENST00000480102 COL22A1Q8NFW1 1626 aaPredicted RBP6.92□□□□□ -1.3
PTCD3-213ENST00000480102 NRG2O14511 850 aaPredicted RBP6.92□□□□□ -1.3
PTCD3-213ENST00000480102 ZBTB24O43167 697 aaPredicted RBP6.92□□□□□ -1.3
PTCD3-213ENST00000480102 GFRA3O60609 400 aa6.92□□□□□ -1.3
PTCD3-213ENST00000480102 CLK2P49760 499 aaKnown RBP6.92□□□□□ -1.3
PTCD3-213ENST00000480102 DESI1Q6ICB0 168 aa6.92□□□□□ -1.3
PTCD3-213ENST00000480102 TRIM67Q6ZTA4 783 aa6.92□□□□□ -1.3
PTCD3-213ENST00000480102 KRT28Q7Z3Y7 464 aa6.92□□□□□ -1.3
PTCD3-213ENST00000480102 CDK19Q9BWU1 502 aa6.92□□□□□ -1.3
PTCD3-213ENST00000480102 CARD11Q9BXL7 1154 aa6.92□□□□□ -1.3
PTCD3-213ENST00000480102 FMN2Q9NZ56 1722 aa6.92□□□□□ -1.3
PTCD3-213ENST00000480102 SSH2Q76I76 1423 aa6.92□□□□□ -1.3
PTCD3-213ENST00000480102 TRPM1Q7Z4N2 1603 aa6.91□□□□□ -1.3
PTCD3-213ENST00000480102 PRR20EP86478 221 aa6.91□□□□□ -1.3
PTCD3-213ENST00000480102 PRR20CP86479 221 aa6.91□□□□□ -1.3
PTCD3-213ENST00000480102 PRR20DP86480 221 aa6.91□□□□□ -1.3
PTCD3-213ENST00000480102 PRR20BP86481 221 aa6.91□□□□□ -1.3
PTCD3-213ENST00000480102 PRR20AP86496 221 aa6.91□□□□□ -1.3
PTCD3-213ENST00000480102 NEUROD1Q13562 356 aa6.91□□□□□ -1.3
PTCD3-213ENST00000480102 QPCTQ16769 361 aa6.91□□□□□ -1.3
PTCD3-213ENST00000480102 PTPRNQ16849 979 aa6.91□□□□□ -1.3
PTCD3-213ENST00000480102 CSPP1Q1MSJ5 1256 aa6.91□□□□□ -1.3
PTCD3-213ENST00000480102 CDCA8Q53HL2 280 aa6.91□□□□□ -1.3
PTCD3-213ENST00000480102 CCDC24Q8N4L8 307 aa6.91□□□□□ -1.3
PTCD3-213ENST00000480102 CABLES1Q8TDN4 633 aa6.91□□□□□ -1.3
PTCD3-213ENST00000480102 NUDT12Q9BQG2 462 aa6.91□□□□□ -1.3
PTCD3-213ENST00000480102 RGS17Q9UGC6 210 aaPredicted RBP6.91□□□□□ -1.3
PTCD3-213ENST00000480102 PDZRN3Q9UPQ7 1066 aa6.91□□□□□ -1.3
PTCD3-213ENST00000480102 CFAP99D6REC4 459 aa6.9□□□□□ -1.3
PTCD3-213ENST00000480102 CD2BP2O95400 341 aaKnown RBP6.9□□□□□ -1.3
PTCD3-213ENST00000480102 TRIM32Q13049 653 aa6.9□□□□□ -1.3
PTCD3-213ENST00000480102 NEUROD2Q15784 382 aa6.9□□□□□ -1.3
PTCD3-213ENST00000480102 SH3D19Q5HYK7 790 aa6.9□□□□□ -1.3
PTCD3-213ENST00000480102 TESK2Q96S53 571 aa6.9□□□□□ -1.3
PTCD3-213ENST00000480102 CPSF1Q10570 1443 aaKnown RBP6.9□□□□□ -1.31
PTCD3-213ENST00000480102 LRP6O75581 1613 aa6.9□□□□□ -1.31
PTCD3-213ENST00000480102 SOCS7O14512 581 aa6.89□□□□□ -1.31
PTCD3-213ENST00000480102 GDF9O60383 454 aa6.89□□□□□ -1.31
PTCD3-213ENST00000480102 LILRB3O75022 631 aa6.89□□□□□ -1.31
PTCD3-213ENST00000480102 CCNYL3P0C7X3 344 aa6.89□□□□□ -1.31
PTCD3-213ENST00000480102 NGDNQ8NEJ9 315 aaKnown RBP6.89□□□□□ -1.31
PTCD3-213ENST00000480102 PCGF6Q9BYE7 350 aa6.89□□□□□ -1.31
PTCD3-213ENST00000480102 POLR3EQ9NVU0 708 aa6.89□□□□□ -1.31
PTCD3-213ENST00000480102 USP19O94966 1318 aa6.89□□□□□ -1.31
PTCD3-213ENST00000480102 TTC21AQ8NDW8 1320 aa6.89□□□□□ -1.31
PTCD3-213ENST00000480102 CPDO75976 1380 aa6.89□□□□□ -1.31
PTCD3-213ENST00000480102 SLIT2O94813 1529 aa6.89□□□□□ -1.31
PTCD3-213ENST00000480102 PHLPP1O60346 1717 aa6.89□□□□□ -1.31
PTCD3-213ENST00000480102 ARHGEF28Q8N1W1 1705 aaKnown RBP6.89□□□□□ -1.31
PTCD3-213ENST00000480102 USP6P35125 1406 aa6.88□□□□□ -1.31
PTCD3-213ENST00000480102 ACEP12821 1306 aa6.88□□□□□ -1.31
PTCD3-213ENST00000480102 NUTM2BA6NNL0 878 aaPredicted RBP6.88□□□□□ -1.31
PTCD3-213ENST00000480102 NUTM2EB1AL46 878 aaPredicted RBP6.88□□□□□ -1.31
PTCD3-213ENST00000480102 BRPF1P55201 1214 aaPredicted RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms