RNA–Protein interactions for RNA: ENST00000480057.1

VTI1A-204, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-204	ENST00000480057	PDE4A	P27815	886 aa		13.81	□□□□□ -0.2
VTI1A-204	ENST00000480057	NUCB1	Q02818	461 aa		13.81	□□□□□ -0.2
VTI1A-204	ENST00000480057	SLC4A10	Q6U841	1118 aa		13.81	□□□□□ -0.2
VTI1A-204	ENST00000480057	BARGIN	Q6ZT62	677 aa		13.81	□□□□□ -0.2
VTI1A-204	ENST00000480057	DDX54	Q8TDD1	881 aa	Known RBP	13.81	□□□□□ -0.2
VTI1A-204	ENST00000480057	DNAAF4	Q8WXU2	420 aa		13.81	□□□□□ -0.2
VTI1A-204	ENST00000480057	MEIS3	Q99687	375 aa		13.81	□□□□□ -0.2
VTI1A-204	ENST00000480057	HDAC5	Q9UQL6	1122 aa		13.81	□□□□□ -0.2
VTI1A-204	ENST00000480057	SPATA31A5	Q5VU36	1347 aa		13.81	□□□□□ -0.2
VTI1A-204	ENST00000480057	SPATA31A7	Q8IWB4	1347 aa		13.81	□□□□□ -0.2
VTI1A-204	ENST00000480057	HMMR	O75330	724 aa		13.8	□□□□□ -0.2
VTI1A-204	ENST00000480057	ALDH1L1	O75891	902 aa		13.8	□□□□□ -0.2
VTI1A-204	ENST00000480057	ADAMTS2	O95450	1211 aa		13.8	□□□□□ -0.2
VTI1A-204	ENST00000480057	PDIA6	Q15084	440 aa		13.8	□□□□□ -0.2
VTI1A-204	ENST00000480057	FAM161A	Q3B820	660 aa		13.8	□□□□□ -0.2
VTI1A-204	ENST00000480057	CEP85	Q6P2H3	762 aa		13.8	□□□□□ -0.2
VTI1A-204	ENST00000480057	KSR2	Q6VAB6	950 aa		13.8	□□□□□ -0.2
VTI1A-204	ENST00000480057	SIRT2	Q8IXJ6	389 aa		13.8	□□□□□ -0.2
VTI1A-204	ENST00000480057	SRCIN1	Q9C0H9	1055 aa		13.8	□□□□□ -0.2
VTI1A-204	ENST00000480057	DCTPP1	Q9H773	170 aa		13.8	□□□□□ -0.2
VTI1A-204	ENST00000480057	ADCY9	O60503	1353 aa		13.8	□□□□□ -0.2
VTI1A-204	ENST00000480057	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.79	□□□□□ -0.2
VTI1A-204	ENST00000480057	RGS3	P49796	1198 aa		13.79	□□□□□ -0.2
VTI1A-204	ENST00000480057	BEND3	Q5T5X7	828 aa		13.79	□□□□□ -0.2
VTI1A-204	ENST00000480057	C1orf115	Q9H7X2	142 aa		13.79	□□□□□ -0.2
VTI1A-204	ENST00000480057	TMOD3	Q9NYL9	352 aa		13.79	□□□□□ -0.2
VTI1A-204	ENST00000480057	USP35	Q9P2H5	1018 aa		13.79	□□□□□ -0.2
VTI1A-204	ENST00000480057	PI4KAP2	A4QPH2	592 aa		13.78	□□□□□ -0.2
VTI1A-204	ENST00000480057	VSIG10	Q8N0Z9	540 aa		13.78	□□□□□ -0.2
VTI1A-204	ENST00000480057	PI4KAP1	Q8N8J0	262 aa		13.78	□□□□□ -0.2
VTI1A-204	ENST00000480057	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.78	□□□□□ -0.2
VTI1A-204	ENST00000480057	ITGB4	P16144	1822 aa		13.78	□□□□□ -0.2
VTI1A-204	ENST00000480057	PRAMEF22	A3QJZ6	481 aa		13.77	□□□□□ -0.21
VTI1A-204	ENST00000480057	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.77	□□□□□ -0.21
VTI1A-204	ENST00000480057	NUTM2E	B1AL46	878 aa	Predicted RBP	13.77	□□□□□ -0.21
VTI1A-204	ENST00000480057	LRP10	Q7Z4F1	713 aa		13.77	□□□□□ -0.21
VTI1A-204	ENST00000480057	CHD1L	Q86WJ1	897 aa		13.77	□□□□□ -0.21
VTI1A-204	ENST00000480057	SKAP1	Q86WV1	359 aa		13.77	□□□□□ -0.21
VTI1A-204	ENST00000480057	UNC5CL	Q8IV45	518 aa		13.77	□□□□□ -0.21
VTI1A-204	ENST00000480057	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.77	□□□□□ -0.21
VTI1A-204	ENST00000480057	USP44	Q9H0E7	712 aa		13.77	□□□□□ -0.21
VTI1A-204	ENST00000480057	BCL9	O00512	1426 aa		13.76	□□□□□ -0.21
VTI1A-204	ENST00000480057	UBTFL1	P0CB47	393 aa	Predicted RBP	13.76	□□□□□ -0.21
VTI1A-204	ENST00000480057	VPS72	Q15906	364 aa		13.76	□□□□□ -0.21
VTI1A-204	ENST00000480057	PROSER3	Q2NL68	480 aa		13.76	□□□□□ -0.21
VTI1A-204	ENST00000480057	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.76	□□□□□ -0.21
VTI1A-204	ENST00000480057	LINS1	Q8NG48	757 aa		13.76	□□□□□ -0.21
VTI1A-204	ENST00000480057	ATP8B2	P98198	1209 aa		13.75	□□□□□ -0.21
VTI1A-204	ENST00000480057	DDB1	Q16531	1140 aa		13.75	□□□□□ -0.21
VTI1A-204	ENST00000480057	MAP3K2	Q9Y2U5	619 aa		13.75	□□□□□ -0.21
VTI1A-204	ENST00000480057	USP16	Q9Y5T5	823 aa		13.75	□□□□□ -0.21
VTI1A-204	ENST00000480057	UTY	O14607	1347 aa		13.74	□□□□□ -0.21
VTI1A-204	ENST00000480057	ANXA1	P04083	346 aa		13.74	□□□□□ -0.21
VTI1A-204	ENST00000480057	C8orf34	Q49A92	452 aa		13.74	□□□□□ -0.21
VTI1A-204	ENST00000480057	BCL9L	Q86UU0	1499 aa		13.74	□□□□□ -0.21
VTI1A-204	ENST00000480057	DOT1L	Q8TEK3	1739 aa		13.73	□□□□□ -0.21
VTI1A-204	ENST00000480057	NEXN	Q0ZGT2	675 aa		13.73	□□□□□ -0.21
VTI1A-204	ENST00000480057	ANKRD45	Q5TZF3	282 aa		13.73	□□□□□ -0.21
VTI1A-204	ENST00000480057	PIGB	Q92521	554 aa		13.73	□□□□□ -0.21
VTI1A-204	ENST00000480057	METTL22	Q9BUU2	404 aa	Predicted RBP	13.73	□□□□□ -0.21
VTI1A-204	ENST00000480057	CIC	Q96RK0	1608 aa	Predicted RBP	13.72	□□□□□ -0.21
VTI1A-204	ENST00000480057	MTX1	Q13505	466 aa		13.72	□□□□□ -0.21
VTI1A-204	ENST00000480057	COPS6	Q7L5N1	327 aa		13.72	□□□□□ -0.21
VTI1A-204	ENST00000480057	RIC3	Q7Z5B4	369 aa		13.72	□□□□□ -0.21
VTI1A-204	ENST00000480057	PLBD2	Q8NHP8	589 aa		13.72	□□□□□ -0.21
VTI1A-204	ENST00000480057	XAGE3	Q8WTP9	111 aa		13.72	□□□□□ -0.21
VTI1A-204	ENST00000480057	NGLY1	Q96IV0	654 aa		13.72	□□□□□ -0.21
VTI1A-204	ENST00000480057	ATG3	Q9NT62	314 aa		13.72	□□□□□ -0.21
VTI1A-204	ENST00000480057	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.72	□□□□□ -0.21
VTI1A-204	ENST00000480057	LRRFIP2	Q9Y608	721 aa	Known RBP	13.72	□□□□□ -0.21
VTI1A-204	ENST00000480057	COL15A1	P39059	1388 aa		13.71	□□□□□ -0.21
VTI1A-204	ENST00000480057	ARFGEF2	Q9Y6D5	1785 aa		13.71	□□□□□ -0.21
VTI1A-204	ENST00000480057	MYL6B	P14649	208 aa		13.71	□□□□□ -0.21
VTI1A-204	ENST00000480057	ANKRD13D	Q6ZTN6	518 aa		13.71	□□□□□ -0.21
VTI1A-204	ENST00000480057	SSH3	Q8TE77	659 aa		13.71	□□□□□ -0.21
VTI1A-204	ENST00000480057	GRM8	O00222	908 aa		13.7	□□□□□ -0.22
VTI1A-204	ENST00000480057	POLA2	Q14181	598 aa		13.7	□□□□□ -0.22
VTI1A-204	ENST00000480057	LNPK	Q9C0E8	428 aa		13.7	□□□□□ -0.22
VTI1A-204	ENST00000480057	NUP188	Q5SRE5	1749 aa		13.7	□□□□□ -0.22
VTI1A-204	ENST00000480057	NBPF26	B4DH59	902 aa		13.69	□□□□□ -0.22
VTI1A-204	ENST00000480057	RAB11FIP3	O75154	756 aa		13.69	□□□□□ -0.22
VTI1A-204	ENST00000480057	STARD3NL	O95772	234 aa		13.69	□□□□□ -0.22
VTI1A-204	ENST00000480057	AIMP1	Q12904	312 aa	Known RBP	13.69	□□□□□ -0.22
VTI1A-204	ENST00000480057	BMP2KL	Q5H9B9	411 aa		13.69	□□□□□ -0.22
VTI1A-204	ENST00000480057	NBPF14	Q5TI25	921 aa		13.69	□□□□□ -0.22
VTI1A-204	ENST00000480057	NBPF10	Q6P3W6	841 aa	Known RBP	13.69	□□□□□ -0.22
VTI1A-204	ENST00000480057	NBPF15	Q8N660	670 aa		13.69	□□□□□ -0.22
VTI1A-204	ENST00000480057	C8orf37	Q96NL8	207 aa		13.69	□□□□□ -0.22
VTI1A-204	ENST00000480057	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.69	□□□□□ -0.22
VTI1A-204	ENST00000480057	CCDC9	Q9Y3X0	531 aa	Known RBP	13.69	□□□□□ -0.22
VTI1A-204	ENST00000480057	ZNF831	Q5JPB2	1677 aa		13.69	□□□□□ -0.22
VTI1A-204	ENST00000480057	THSD7A	Q9UPZ6	1657 aa		13.69	□□□□□ -0.22
VTI1A-204	ENST00000480057	NEURL1B	A8MQ27	555 aa		13.68	□□□□□ -0.22
VTI1A-204	ENST00000480057	PTCD1	O75127	700 aa	Known RBP	13.68	□□□□□ -0.22
VTI1A-204	ENST00000480057	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.68	□□□□□ -0.22
VTI1A-204	ENST00000480057	ANP32A	P39687	249 aa	Known RBP	13.68	□□□□□ -0.22
VTI1A-204	ENST00000480057	HSP90AB4P	Q58FF6	505 aa		13.68	□□□□□ -0.22
VTI1A-204	ENST00000480057	MARCH10	Q8NA82	808 aa	Predicted RBP	13.68	□□□□□ -0.22
VTI1A-204	ENST00000480057	ASAP1	Q9ULH1	1129 aa		13.68	□□□□□ -0.22
VTI1A-204	ENST00000480057	PNMA6E	A0A0J9YXQ4	647 aa		13.67	□□□□□ -0.22

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