RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 PPP1R42Q7Z4L9 355 aa16.06■□□□□ 0.16
SEC13-216ENST00000479868 RBM42Q9BTD8 480 aaKnown RBP16.06■□□□□ 0.16
SEC13-216ENST00000479868 TUBGCP6Q96RT7 1819 aa16.06■□□□□ 0.16
SEC13-216ENST00000479868 CD2BP2O95400 341 aaKnown RBP16.05■□□□□ 0.16
SEC13-216ENST00000479868 SLC52A2Q9HAB3 445 aa16.05■□□□□ 0.16
SEC13-216ENST00000479868 SPG7Q9UQ90 795 aa16.05■□□□□ 0.16
SEC13-216ENST00000479868 ABCC6O95255 1503 aa16.04■□□□□ 0.16
SEC13-216ENST00000479868 MX1P20591 662 aa16.04■□□□□ 0.16
SEC13-216ENST00000479868 ZNF790Q6PG37 636 aa16.04■□□□□ 0.16
SEC13-216ENST00000479868 NFATC2IPQ8NCF5 419 aa16.04■□□□□ 0.16
SEC13-216ENST00000479868 MAP3K2Q9Y2U5 619 aa16.04■□□□□ 0.16
SEC13-216ENST00000479868 POLA2Q14181 598 aa16.04■□□□□ 0.16
SEC13-216ENST00000479868 USP26Q9BXU7 913 aa16.04■□□□□ 0.16
SEC13-216ENST00000479868 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.04■□□□□ 0.164e-7■■■□□ 17.9
SEC13-216ENST00000479868 C5P01031 1676 aa16.04■□□□□ 0.16
SEC13-216ENST00000479868 CPDO75976 1380 aa16.03■□□□□ 0.16
SEC13-216ENST00000479868 CASC1Q6TDU7 716 aa16.03■□□□□ 0.16
SEC13-216ENST00000479868 CYP27B1O15528 508 aa16.02■□□□□ 0.16
SEC13-216ENST00000479868 SRGAP3O43295 1099 aa16.02■□□□□ 0.16
SEC13-216ENST00000479868 KSR2Q6VAB6 950 aa16.02■□□□□ 0.16
SEC13-216ENST00000479868 IFNL2Q8IZJ0 200 aa16.02■□□□□ 0.16
SEC13-216ENST00000479868 EIF5BO60841 1220 aaKnown RBP16.02■□□□□ 0.15
SEC13-216ENST00000479868 PDIA6Q15084 440 aa16.02■□□□□ 0.15
SEC13-216ENST00000479868 IL1RAPL2Q9NP60 686 aa16.02■□□□□ 0.15
SEC13-216ENST00000479868 HYPKQ9NX55 129 aa16.02■□□□□ 0.15
SEC13-216ENST00000479868 PKD1L3Q7Z443 1732 aa16.02■□□□□ 0.15
SEC13-216ENST00000479868 SURF6O75683 361 aaKnown RBP16.01■□□□□ 0.15
SEC13-216ENST00000479868 ZNF335Q9H4Z2 1342 aaPredicted RBP16.01■□□□□ 0.15
SEC13-216ENST00000479868 DDX21Q9NR30 783 aaKnown RBP eCLIP16.01■□□□□ 0.15
SEC13-216ENST00000479868 CHMP5Q9NZZ3 219 aa16.01■□□□□ 0.15
SEC13-216ENST00000479868 GSE1Q14687 1217 aa16■□□□□ 0.15
SEC13-216ENST00000479868 CWF19L2Q2TBE0 894 aaKnown RBP16■□□□□ 0.15
SEC13-216ENST00000479868 STAP2Q9UGK3 403 aa16■□□□□ 0.15
SEC13-216ENST00000479868 KDM4FA0A1W2PPD8 638 aa16■□□□□ 0.15
SEC13-216ENST00000479868 DDIT3P35638 169 aa16■□□□□ 0.15
SEC13-216ENST00000479868 AIMP1Q12904 312 aaKnown RBP16■□□□□ 0.15
SEC13-216ENST00000479868 RAB11FIP3O75154 756 aa15.99■□□□□ 0.15
SEC13-216ENST00000479868 ALDH1L1O75891 902 aa15.99■□□□□ 0.15
SEC13-216ENST00000479868 HSP90AB1P08238 724 aaKnown RBP15.99■□□□□ 0.15
SEC13-216ENST00000479868 ZNF496Q96IT1 587 aaPredicted RBP15.99■□□□□ 0.15
SEC13-216ENST00000479868 DCAF5Q96JK2 942 aa15.99■□□□□ 0.15
SEC13-216ENST00000479868 MRC1P22897 1456 aa15.99■□□□□ 0.15
SEC13-216ENST00000479868 RHPN1Q8TCX5 695 aa15.99■□□□□ 0.15
SEC13-216ENST00000479868 C9orf78Q9NZ63 289 aaPredicted RBP15.99■□□□□ 0.15
SEC13-216ENST00000479868 SLAIN2Q9P270 581 aa15.99■□□□□ 0.15
SEC13-216ENST00000479868 PLEKHG2Q9H7P9 1386 aa15.98■□□□□ 0.15
SEC13-216ENST00000479868 K7ELQ4 463 aaPredicted RBP15.98■□□□□ 0.15
SEC13-216ENST00000479868 ERC2O15083 957 aa15.98■□□□□ 0.15
SEC13-216ENST00000479868 NUTM1Q86Y26 1132 aa15.98■□□□□ 0.15
SEC13-216ENST00000479868 SOS2Q07890 1332 aaPredicted RBP15.98■□□□□ 0.15
SEC13-216ENST00000479868 REC8O95072 547 aa15.98■□□□□ 0.15
SEC13-216ENST00000479868 UNC5CLQ8IV45 518 aa15.97■□□□□ 0.15
SEC13-216ENST00000479868 PRDM11Q9NQV5 511 aa15.97■□□□□ 0.15
SEC13-216ENST00000479868 TRIM6-TRIM34B2RNG4 842 aa15.97■□□□□ 0.15
SEC13-216ENST00000479868 MYL6BP14649 208 aa15.97■□□□□ 0.15
SEC13-216ENST00000479868 MTX1Q13505 466 aa15.97■□□□□ 0.15
SEC13-216ENST00000479868 RABEP1Q15276 862 aa15.97■□□□□ 0.15
SEC13-216ENST00000479868 LINS1Q8NG48 757 aa15.97■□□□□ 0.15
SEC13-216ENST00000479868 RILPL2Q969X0 211 aa15.97■□□□□ 0.15
SEC13-216ENST00000479868 DDX58O95786 925 aaKnown RBP15.96■□□□□ 0.15
SEC13-216ENST00000479868 KIF1BPQ96EK5 621 aa15.96■□□□□ 0.15
SEC13-216ENST00000479868 AOX1Q06278 1338 aa15.96■□□□□ 0.15
SEC13-216ENST00000479868 USP16Q9Y5T5 823 aa15.95■□□□□ 0.14
SEC13-216ENST00000479868 WDR17Q8IZU2 1322 aa15.95■□□□□ 0.14
SEC13-216ENST00000479868 TTC5Q8N0Z6 440 aa15.95■□□□□ 0.14
SEC13-216ENST00000479868 ESYT1Q9BSJ8 1104 aa15.95■□□□□ 0.14
SEC13-216ENST00000479868 FOXD4L1Q9NU39 408 aa15.95■□□□□ 0.14
SEC13-216ENST00000479868 GRM8O00222 908 aa15.94■□□□□ 0.14
SEC13-216ENST00000479868 IGKV5-2P06315 115 aa15.94■□□□□ 0.14
SEC13-216ENST00000479868 CHMLP26374 656 aa15.94■□□□□ 0.14
SEC13-216ENST00000479868 SNRPA1P09661 255 aaKnown RBP15.94■□□□□ 0.14
SEC13-216ENST00000479868 PIP4K2AP48426 406 aaPredicted RBP15.94■□□□□ 0.14
SEC13-216ENST00000479868 CABP4P57796 275 aa15.94■□□□□ 0.14
SEC13-216ENST00000479868 TOM1L2Q6ZVM7 507 aa15.94■□□□□ 0.14
SEC13-216ENST00000479868 RIC3Q7Z5B4 369 aa15.94■□□□□ 0.14
SEC13-216ENST00000479868 PI4K2BQ8TCG2 481 aa15.94■□□□□ 0.14
SEC13-216ENST00000479868 XAGE3Q8WTP9 111 aa15.94■□□□□ 0.14
SEC13-216ENST00000479868 KAZALD1Q96I82 304 aa15.94■□□□□ 0.14
SEC13-216ENST00000479868 COL5A2P05997 1499 aaPredicted RBP15.94■□□□□ 0.14
SEC13-216ENST00000479868 ABCA3Q99758 1704 aa15.94■□□□□ 0.14
SEC13-216ENST00000479868 PARP4Q9UKK3 1724 aaKnown RBP15.94■□□□□ 0.14
SEC13-216ENST00000479868 HSP90AA1P07900 732 aaKnown RBP15.93■□□□□ 0.14
SEC13-216ENST00000479868 MCM4P33991 863 aa15.93■□□□□ 0.14
SEC13-216ENST00000479868 COPS6Q7L5N1 327 aa15.93■□□□□ 0.14
SEC13-216ENST00000479868 LRP10Q7Z4F1 713 aa15.93■□□□□ 0.14
SEC13-216ENST00000479868 SUCLG2Q96I99 432 aa15.93■□□□□ 0.14
SEC13-216ENST00000479868 AK9Q5TCS8 1911 aa15.93■□□□□ 0.14
SEC13-216ENST00000479868 UTYO14607 1347 aa15.93■□□□□ 0.14
SEC13-216ENST00000479868 HSP90AB4PQ58FF6 505 aa15.93■□□□□ 0.14
SEC13-216ENST00000479868 FMNL2Q96PY5 1086 aa15.93■□□□□ 0.14
SEC13-216ENST00000479868 PA2G4Q9UQ80 394 aaKnown RBP15.93■□□□□ 0.14
SEC13-216ENST00000479868 GLI3P10071 1580 aa15.93■□□□□ 0.14
SEC13-216ENST00000479868 MAP4K4O95819 1239 aaPredicted RBP15.92■□□□□ 0.14
SEC13-216ENST00000479868 OS9Q13438 667 aaPredicted RBP15.92■□□□□ 0.14
SEC13-216ENST00000479868 LARP1Q6PKG0 1096 aaKnown RBP15.92■□□□□ 0.14
SEC13-216ENST00000479868 BICC1Q9H694 974 aaKnown RBP15.92■□□□□ 0.14
SEC13-216ENST00000479868 CIZ1Q9ULV3 898 aaPredicted RBP15.91■□□□□ 0.14
SEC13-216ENST00000479868 NEURL1BA8MQ27 555 aa15.91■□□□□ 0.14
SEC13-216ENST00000479868 ZCRB1Q8TBF4 217 aaKnown RBP15.91■□□□□ 0.14
SEC13-216ENST00000479868 IL25Q9H293 177 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms