RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 NCLP19338 710 aaKnown RBP21.99■■□□□ 1.11
CCM2-209ENST00000477605 RILPL2Q969X0 211 aa21.99■■□□□ 1.11
CCM2-209ENST00000477605 ANO2Q9NQ90 1003 aa21.99■■□□□ 1.11
CCM2-209ENST00000477605 ABTB2Q8N961 1025 aa21.97■■□□□ 1.11
CCM2-209ENST00000477605 ERBB4Q15303 1308 aa21.97■■□□□ 1.11
CCM2-209ENST00000477605 HSP90AB4PQ58FF6 505 aa21.96■■□□□ 1.11
CCM2-209ENST00000477605 TSHZ3Q63HK5 1081 aa21.95■■□□□ 1.11
CCM2-209ENST00000477605 ZSCAN30Q86W11 494 aa21.95■■□□□ 1.11
CCM2-209ENST00000477605 GPT2Q8TD30 523 aa21.95■■□□□ 1.11
CCM2-209ENST00000477605 IP6K1Q92551 441 aa21.95■■□□□ 1.11
CCM2-209ENST00000477605 NAP1L5Q96NT1 182 aaPredicted RBP21.95■■□□□ 1.11
CCM2-209ENST00000477605 MARF1Q9Y4F3 1742 aaKnown RBP21.95■■□□□ 1.1
CCM2-209ENST00000477605 RGPD8O14715 1765 aaPredicted RBP21.95■■□□□ 1.1
CCM2-209ENST00000477605 HSPA4P34932 840 aa21.94■■□□□ 1.1
CCM2-209ENST00000477605 NECTIN2Q92692 538 aa21.94■■□□□ 1.1
CCM2-209ENST00000477605 KIF1BPQ96EK5 621 aa21.94■■□□□ 1.1
CCM2-209ENST00000477605 PALD1Q9ULE6 856 aa21.94■■□□□ 1.1
CCM2-209ENST00000477605 MED1Q15648 1581 aaPredicted RBP21.93■■□□□ 1.1
CCM2-209ENST00000477605 LRSAM1Q6UWE0 723 aa21.93■■□□□ 1.1
CCM2-209ENST00000477605 PPP1R42Q7Z4L9 355 aa21.93■■□□□ 1.1
CCM2-209ENST00000477605 RHPN1Q8TCX5 695 aa21.93■■□□□ 1.1
CCM2-209ENST00000477605 PLEKHG5O94827 1062 aa21.92■■□□□ 1.1
CCM2-209ENST00000477605 EIF4A1P60842 406 aaKnown RBP21.92■■□□□ 1.1
CCM2-209ENST00000477605 ADGRL3Q9HAR2 1447 aa21.92■■□□□ 1.1
CCM2-209ENST00000477605 SURF6O75683 361 aaKnown RBP21.92■■□□□ 1.1
CCM2-209ENST00000477605 PDLIM2Q96JY6 352 aa21.92■■□□□ 1.1
CCM2-209ENST00000477605 USP42Q9H9J4 1324 aaKnown RBP21.91■■□□□ 1.1
CCM2-209ENST00000477605 UNC5CLQ8IV45 518 aa21.91■■□□□ 1.1
CCM2-209ENST00000477605 PHAXQ9H814 394 aaKnown RBP21.91■■□□□ 1.1
CCM2-209ENST00000477605 PI4K2BQ8TCG2 481 aa21.91■■□□□ 1.1
CCM2-209ENST00000477605 RBSNQ9H1K0 784 aa21.91■■□□□ 1.1
CCM2-209ENST00000477605 PRIM1P49642 420 aaKnown RBP21.9■■□□□ 1.1
CCM2-209ENST00000477605 BEND3Q5T5X7 828 aa21.9■■□□□ 1.1
CCM2-209ENST00000477605 DNAAF4Q8WXU2 420 aa21.9■■□□□ 1.1
CCM2-209ENST00000477605 LTV1Q96GA3 475 aaPredicted RBP21.9■■□□□ 1.1
CCM2-209ENST00000477605 HDAC5Q9UQL6 1122 aa21.9■■□□□ 1.1
CCM2-209ENST00000477605 SGSM2O43147 1006 aa21.89■■□□□ 1.1
CCM2-209ENST00000477605 NUTM2GQ5VZR2 741 aa21.89■■□□□ 1.1
CCM2-209ENST00000477605 CNTROBQ8N137 903 aa21.89■■□□□ 1.1
CCM2-209ENST00000477605 SYAP1Q96A49 352 aaPredicted RBP21.89■■□□□ 1.1
CCM2-209ENST00000477605 PHF8Q9UPP1 1060 aa21.89■■□□□ 1.1
CCM2-209ENST00000477605 WDR33Q9C0J8 1336 aaKnown RBP21.89■■□□□ 1.09
CCM2-209ENST00000477605 C14orf37Q86TY3 774 aa21.89■■□□□ 1.09
CCM2-209ENST00000477605 KCNH5Q8NCM2 988 aa21.89■■□□□ 1.09
CCM2-209ENST00000477605 IL1RAPL2Q9NP60 686 aa21.89■■□□□ 1.09
CCM2-209ENST00000477605 TTC41PQ6P2S7 1318 aa21.88■■□□□ 1.09
CCM2-209ENST00000477605 RAD50Q92878 1312 aa21.88■■□□□ 1.09
CCM2-209ENST00000477605 SRGAP3O43295 1099 aa21.88■■□□□ 1.09
CCM2-209ENST00000477605 MTX1Q13505 466 aa21.88■■□□□ 1.09
CCM2-209ENST00000477605 TMEM63CQ9P1W3 806 aa21.88■■□□□ 1.09
CCM2-209ENST00000477605 C19orf44Q9H6X5 657 aa21.87■■□□□ 1.09
CCM2-209ENST00000477605 AK9Q5TCS8 1911 aa21.87■■□□□ 1.09
CCM2-209ENST00000477605 AKAP4Q5JQC9 854 aa21.87■■□□□ 1.09
CCM2-209ENST00000477605 NUTM1Q86Y26 1132 aa21.87■■□□□ 1.09
CCM2-209ENST00000477605 MSNP26038 577 aaKnown RBP21.86■■□□□ 1.09
CCM2-209ENST00000477605 SLAIN2Q9P270 581 aa21.86■■□□□ 1.09
CCM2-209ENST00000477605 KLHL34Q8N239 644 aa21.86■■□□□ 1.09
CCM2-209ENST00000477605 RBM27Q9P2N5 1060 aaKnown RBP21.86■■□□□ 1.09
CCM2-209ENST00000477605 NFAT5O94916 1531 aa21.85■■□□□ 1.09
CCM2-209ENST00000477605 OVOS2A0A0G2JMS6 1433 aa21.85■■□□□ 1.09
CCM2-209ENST00000477605 ROBO1Q9Y6N7 1651 aa21.85■■□□□ 1.09
CCM2-209ENST00000477605 AMOTQ4VCS5 1084 aa21.85■■□□□ 1.09
CCM2-209ENST00000477605 PLEKHO1Q53GL0 409 aaPredicted RBP21.85■■□□□ 1.09
CCM2-209ENST00000477605 ALDH1L1O75891 902 aa21.84■■□□□ 1.09
CCM2-209ENST00000477605 GLRX3O76003 335 aaKnown RBP21.84■■□□□ 1.09
CCM2-209ENST00000477605 PHF14O94880 888 aa21.84■■□□□ 1.09
CCM2-209ENST00000477605 NBPF6Q5VWK0 638 aa21.84■■□□□ 1.09
CCM2-209ENST00000477605 NBPF4Q96M43 638 aa21.84■■□□□ 1.09
CCM2-209ENST00000477605 CHPF2Q9P2E5 772 aa21.84■■□□□ 1.09
CCM2-209ENST00000477605 NCAPD2Q15021 1401 aa21.84■■□□□ 1.09
CCM2-209ENST00000477605 PI4KAP2A4QPH2 592 aa21.84■■□□□ 1.09
CCM2-209ENST00000477605 TPM2P07951 284 aa21.84■■□□□ 1.09
CCM2-209ENST00000477605 EIF2S2P20042 333 aaKnown RBP21.84■■□□□ 1.09
CCM2-209ENST00000477605 MCM5P33992 734 aa21.84■■□□□ 1.09
CCM2-209ENST00000477605 KIAA1211Q6ZU35 1233 aa21.84■■□□□ 1.09
CCM2-209ENST00000477605 USHBP1Q8N6Y0 703 aa21.84■■□□□ 1.09
CCM2-209ENST00000477605 PI4KAP1Q8N8J0 262 aa21.84■■□□□ 1.09
CCM2-209ENST00000477605 UPF3BQ9BZI7 483 aaKnown RBP21.84■■□□□ 1.09
CCM2-209ENST00000477605 LSG1Q9H089 658 aaKnown RBP21.84■■□□□ 1.09
CCM2-209ENST00000477605 NOL7Q9UMY1 257 aaKnown RBP21.84■■□□□ 1.09
CCM2-209ENST00000477605 NBPF7P0C2Y1 421 aaPredicted RBP21.83■■□□□ 1.09
CCM2-209ENST00000477605 TEFQ10587 303 aa21.83■■□□□ 1.09
CCM2-209ENST00000477605 TMEM87AQ8NBN3 555 aa21.83■■□□□ 1.09
CCM2-209ENST00000477605 RUFY2Q8WXA3 655 aa21.83■■□□□ 1.09
CCM2-209ENST00000477605 DBF4Q9UBU7 674 aaPredicted RBP21.83■■□□□ 1.09
CCM2-209ENST00000477605 KDM3BQ7LBC6 1761 aa21.83■■□□□ 1.08
CCM2-209ENST00000477605 CADPS2Q86UW7 1296 aa21.83■■□□□ 1.08
CCM2-209ENST00000477605 ERC1Q8IUD2 1116 aa21.83■■□□□ 1.08
CCM2-209ENST00000477605 TTC14Q96N46 770 aa21.83■■□□□ 1.08
CCM2-209ENST00000477605 LGR6Q9HBX8 967 aa21.83■■□□□ 1.08
CCM2-209ENST00000477605 SNX14Q9Y5W7 946 aa21.83■■□□□ 1.08
CCM2-209ENST00000477605 PHRF1Q9P1Y6 1649 aaKnown RBP21.82■■□□□ 1.08
CCM2-209ENST00000477605 SYCE3A1L190 88 aa21.82■■□□□ 1.08
CCM2-209ENST00000477605 TERF1P54274 439 aa21.82■■□□□ 1.08
CCM2-209ENST00000477605 BTBD11A6QL63 1104 aa21.81■■□□□ 1.08
CCM2-209ENST00000477605 OFD1O75665 1012 aa21.81■■□□□ 1.08
CCM2-209ENST00000477605 ATF3P18847 181 aa21.81■■□□□ 1.08
CCM2-209ENST00000477605 IL25Q9H293 177 aa21.81■■□□□ 1.08
CCM2-209ENST00000477605 NSFL1CQ9UNZ2 370 aaKnown RBP21.81■■□□□ 1.08
CCM2-209ENST00000477605 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms