RNA–Protein interactions for RNA: ENST00000477552.1

PTPRD-209, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 4

Gene PTPRD, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-209ENST00000477552 BRPF3Q9ULD4 1205 aa10.17□□□□□ -0.78
PTPRD-209ENST00000477552 ATP6V1DQ9Y5K8 247 aa10.17□□□□□ -0.78
PTPRD-209ENST00000477552 DDX49Q9Y6V7 483 aaKnown RBP10.17□□□□□ -0.78
PTPRD-209ENST00000477552 XRCC6P12956 609 aaKnown RBP eCLIP10.16□□□□□ -0.78
PTPRD-209ENST00000477552 CCDC173Q0VFZ6 552 aa10.16□□□□□ -0.78
PTPRD-209ENST00000477552 ZNF530Q6P9A1 599 aaPredicted RBP10.16□□□□□ -0.78
PTPRD-209ENST00000477552 ARHGEF25Q86VW2 580 aa10.16□□□□□ -0.78
PTPRD-209ENST00000477552 CLASRPQ8N2M8 674 aaKnown RBP10.16□□□□□ -0.78
PTPRD-209ENST00000477552 LRRFIP2Q9Y608 721 aaKnown RBP10.16□□□□□ -0.78
PTPRD-209ENST00000477552 TRPM3Q9HCF6 1732 aaPredicted RBP10.16□□□□□ -0.78
PTPRD-209ENST00000477552 CRYBG1Q9Y4K1 1723 aa10.16□□□□□ -0.78
PTPRD-209ENST00000477552 HEG1Q9ULI3 1381 aa10.15□□□□□ -0.78
PTPRD-209ENST00000477552 BTBD11A6QL63 1104 aa10.15□□□□□ -0.78
PTPRD-209ENST00000477552 TRIM6-TRIM34B2RNG4 842 aa10.15□□□□□ -0.78
PTPRD-209ENST00000477552 F6X3S4 739 aa10.15□□□□□ -0.78
PTPRD-209ENST00000477552 C14orf37Q86TY3 774 aa10.15□□□□□ -0.78
PTPRD-209ENST00000477552 C16orf71Q8IYS4 520 aaPredicted RBP10.15□□□□□ -0.78
PTPRD-209ENST00000477552 MIS18AQ9NYP9 233 aa10.15□□□□□ -0.78
PTPRD-209ENST00000477552 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.15□□□□□ -0.78
PTPRD-209ENST00000477552 RAD50Q92878 1312 aa10.14□□□□□ -0.79
PTPRD-209ENST00000477552 WDR33Q9C0J8 1336 aaKnown RBP10.14□□□□□ -0.79
PTPRD-209ENST00000477552 RNMTO43148 476 aaKnown RBP10.14□□□□□ -0.79
PTPRD-209ENST00000477552 SMARCA5O60264 1052 aaPredicted RBP10.14□□□□□ -0.79
PTPRD-209ENST00000477552 SURF6O75683 361 aaKnown RBP10.14□□□□□ -0.79
PTPRD-209ENST00000477552 LETM1O95202 739 aaPredicted RBP10.14□□□□□ -0.79
PTPRD-209ENST00000477552 GCP02774 474 aa10.14□□□□□ -0.79
PTPRD-209ENST00000477552 KCNA4P22459 653 aa10.14□□□□□ -0.79
PTPRD-209ENST00000477552 NEK4P51957 841 aa10.14□□□□□ -0.79
PTPRD-209ENST00000477552 ESCO1Q5FWF5 840 aa10.14□□□□□ -0.79
PTPRD-209ENST00000477552 BEND3Q5T5X7 828 aa10.14□□□□□ -0.79
PTPRD-209ENST00000477552 KSR2Q6VAB6 950 aa10.14□□□□□ -0.79
PTPRD-209ENST00000477552 LINS1Q8NG48 757 aa10.14□□□□□ -0.79
PTPRD-209ENST00000477552 RHPN1Q8TCX5 695 aa10.14□□□□□ -0.79
PTPRD-209ENST00000477552 CHMP4CQ96CF2 233 aa10.14□□□□□ -0.79
PTPRD-209ENST00000477552 ZSCAN31Q96LW9 406 aaPredicted RBP10.14□□□□□ -0.79
PTPRD-209ENST00000477552 TM6SF1Q9BZW5 370 aa10.14□□□□□ -0.79
PTPRD-209ENST00000477552 EXOC6BQ9Y2D4 811 aa10.14□□□□□ -0.79
PTPRD-209ENST00000477552 SCN11AQ9UI33 1791 aa10.14□□□□□ -0.79
PTPRD-209ENST00000477552 COL15A1P39059 1388 aa10.14□□□□□ -0.79
PTPRD-209ENST00000477552 UTYO14607 1347 aa10.13□□□□□ -0.79
PTPRD-209ENST00000477552 SRGAP3O43295 1099 aa10.13□□□□□ -0.79
PTPRD-209ENST00000477552 HSPA4P34932 840 aa10.13□□□□□ -0.79
PTPRD-209ENST00000477552 CLCN1P35523 988 aa10.13□□□□□ -0.79
PTPRD-209ENST00000477552 NEXNQ0ZGT2 675 aa10.13□□□□□ -0.79
PTPRD-209ENST00000477552 NBPF6Q5VWK0 638 aa10.13□□□□□ -0.79
PTPRD-209ENST00000477552 PPP1R42Q7Z4L9 355 aa10.13□□□□□ -0.79
PTPRD-209ENST00000477552 RILPL2Q969X0 211 aa10.13□□□□□ -0.79
PTPRD-209ENST00000477552 NBPF4Q96M43 638 aa10.13□□□□□ -0.79
PTPRD-209ENST00000477552 ANO2Q9NQ90 1003 aa10.13□□□□□ -0.79
PTPRD-209ENST00000477552 SH2B1Q9NRF2 756 aaPredicted RBP10.13□□□□□ -0.79
PTPRD-209ENST00000477552 SPG7Q9UQ90 795 aa10.13□□□□□ -0.79
PTPRD-209ENST00000477552 ERBB4Q15303 1308 aa10.12□□□□□ -0.79
PTPRD-209ENST00000477552 PNMA6EA0A0J9YXQ4 647 aa10.12□□□□□ -0.79
PTPRD-209ENST00000477552 APBB1O00213 710 aa10.12□□□□□ -0.79
PTPRD-209ENST00000477552 PLEKHG5O94827 1062 aa10.12□□□□□ -0.79
PTPRD-209ENST00000477552 SSFA2P28290 1259 aa10.12□□□□□ -0.79
PTPRD-209ENST00000477552 LARP1Q6PKG0 1096 aaKnown RBP10.12□□□□□ -0.79
PTPRD-209ENST00000477552 FAM184AQ8NB25 1140 aa10.12□□□□□ -0.79
PTPRD-209ENST00000477552 EVI5LQ96CN4 794 aa10.12□□□□□ -0.79
PTPRD-209ENST00000477552 TMX3Q96JJ7 454 aa10.12□□□□□ -0.79
PTPRD-209ENST00000477552 PPP1R9BQ96SB3 815 aa10.12□□□□□ -0.79
PTPRD-209ENST00000477552 C19orf44Q9H6X5 657 aa10.12□□□□□ -0.79
PTPRD-209ENST00000477552 DDX21Q9NR30 783 aaKnown RBP eCLIP10.12□□□□□ -0.79
PTPRD-209ENST00000477552 ECHDC1Q9NTX5 307 aa10.12□□□□□ -0.79
PTPRD-209ENST00000477552 C9orf78Q9NZ63 289 aaPredicted RBP10.12□□□□□ -0.79
PTPRD-209ENST00000477552 RFX7Q2KHR2 1363 aa10.12□□□□□ -0.79
PTPRD-209ENST00000477552 ALS2Q96Q42 1657 aa10.12□□□□□ -0.79
PTPRD-209ENST00000477552 PI4KAP2A4QPH2 592 aa10.11□□□□□ -0.79
PTPRD-209ENST00000477552 SGSM2O43147 1006 aa10.11□□□□□ -0.79
PTPRD-209ENST00000477552 GIGYF1O75420 1035 aaPredicted RBP10.11□□□□□ -0.79
PTPRD-209ENST00000477552 CD2BP2O95400 341 aaKnown RBP10.11□□□□□ -0.79
PTPRD-209ENST00000477552 BRD1O95696 1058 aa10.11□□□□□ -0.79
PTPRD-209ENST00000477552 ZKSCAN1P17029 563 aaPredicted RBP10.11□□□□□ -0.79
PTPRD-209ENST00000477552 MCM5P33992 734 aa10.11□□□□□ -0.79
PTPRD-209ENST00000477552 OS9Q13438 667 aaPredicted RBP10.11□□□□□ -0.79
PTPRD-209ENST00000477552 ANKRD1Q15327 319 aa10.11□□□□□ -0.79
PTPRD-209ENST00000477552 RNF20Q5VTR2 975 aa10.11□□□□□ -0.79
PTPRD-209ENST00000477552 PI4KAP1Q8N8J0 262 aa10.11□□□□□ -0.79
PTPRD-209ENST00000477552 OTUD7AQ8TE49 926 aaPredicted RBP10.11□□□□□ -0.79
PTPRD-209ENST00000477552 RAPGEF4Q8WZA2 1011 aa10.11□□□□□ -0.79
PTPRD-209ENST00000477552 LTV1Q96GA3 475 aaPredicted RBP10.11□□□□□ -0.79
PTPRD-209ENST00000477552 RBM42Q9BTD8 480 aaKnown RBP10.11□□□□□ -0.79
PTPRD-209ENST00000477552 GZF1Q9H116 711 aaPredicted RBP10.11□□□□□ -0.79
PTPRD-209ENST00000477552 DIAPH3Q9NSV4 1193 aa10.11□□□□□ -0.79
PTPRD-209ENST00000477552 RGPD2P0DJD1 1756 aa10.11□□□□□ -0.79
PTPRD-209ENST00000477552 IFIT2P09913 472 aaKnown RBP10.1□□□□□ -0.79
PTPRD-209ENST00000477552 PSMA5P28066 241 aa10.1□□□□□ -0.79
PTPRD-209ENST00000477552 NASPP49321 788 aaPredicted RBP10.1□□□□□ -0.79
PTPRD-209ENST00000477552 MCTP1Q6DN14 999 aa10.1□□□□□ -0.79
PTPRD-209ENST00000477552 ANKRD24Q8TF21 1146 aa10.1□□□□□ -0.79
PTPRD-209ENST00000477552 LMBRD1Q9NUN5 540 aa10.1□□□□□ -0.79
PTPRD-209ENST00000477552 CHPF2Q9P2E5 772 aa10.1□□□□□ -0.79
PTPRD-209ENST00000477552 PARP4Q9UKK3 1724 aaKnown RBP10.1□□□□□ -0.79
PTPRD-209ENST00000477552 TATP17735 454 aaPredicted RBP10.09□□□□□ -0.79
PTPRD-209ENST00000477552 EIF2S2P20042 333 aaKnown RBP10.09□□□□□ -0.79
PTPRD-209ENST00000477552 PDCP20941 246 aa10.09□□□□□ -0.79
PTPRD-209ENST00000477552 G3BP1Q13283 466 aaKnown RBP eCLIP10.09□□□□□ -0.79
PTPRD-209ENST00000477552 KRT28Q7Z3Y7 464 aa10.09□□□□□ -0.79
PTPRD-209ENST00000477552 KCNB2Q92953 911 aa10.09□□□□□ -0.79
PTPRD-209ENST00000477552 ALDH8A1Q9H2A2 487 aaPredicted RBP10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms