RNA–Protein interactions for RNA: ENST00000477489.1

LDB3-206, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best)

Gene LDB3, Length 433 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-206ENST00000477489 FOXK1P85037 733 aa8.51□□□□□ -1.05
LDB3-206ENST00000477489 AMOTQ4VCS5 1084 aa8.51□□□□□ -1.05
LDB3-206ENST00000477489 AEBP1Q8IUX7 1158 aa8.51□□□□□ -1.05
LDB3-206ENST00000477489 DZIP1LQ8IYY4 767 aaKnown RBP8.51□□□□□ -1.05
LDB3-206ENST00000477489 ZNF687Q8N1G0 1237 aa8.51□□□□□ -1.05
LDB3-206ENST00000477489 TSR2Q969E8 191 aaKnown RBP8.51□□□□□ -1.05
LDB3-206ENST00000477489 CLUAP1Q96AJ1 413 aa8.51□□□□□ -1.05
LDB3-206ENST00000477489 RBM33Q96EV2 1170 aaKnown RBP8.51□□□□□ -1.05
LDB3-206ENST00000477489 CRB1P82279 1406 aa8.51□□□□□ -1.05
LDB3-206ENST00000477489 NHSL1Q5SYE7 1610 aa8.51□□□□□ -1.05
LDB3-206ENST00000477489 COL18A1P39060 1754 aa8.5□□□□□ -1.05
LDB3-206ENST00000477489 ADAMTS7Q9UKP4 1686 aa8.5□□□□□ -1.05
LDB3-206ENST00000477489 NUTM2BA6NNL0 878 aaPredicted RBP8.5□□□□□ -1.05
LDB3-206ENST00000477489 GNAT3A8MTJ3 354 aa8.5□□□□□ -1.05
LDB3-206ENST00000477489 NUTM2EB1AL46 878 aaPredicted RBP8.5□□□□□ -1.05
LDB3-206ENST00000477489 GTPBP6O43824 516 aaPredicted RBP8.5□□□□□ -1.05
LDB3-206ENST00000477489 VAMP4O75379 141 aa8.5□□□□□ -1.05
LDB3-206ENST00000477489 NUDT7P0C024 238 aa8.5□□□□□ -1.05
LDB3-206ENST00000477489 MVPQ14764 893 aaKnown RBP8.5□□□□□ -1.05
LDB3-206ENST00000477489 C20orf194Q5TEA3 1177 aa8.5□□□□□ -1.05
LDB3-206ENST00000477489 NUTM2AQ8IVF1 878 aaPredicted RBP8.5□□□□□ -1.05
LDB3-206ENST00000477489 FTSJ3Q8IY81 847 aaKnown RBP8.5□□□□□ -1.05
LDB3-206ENST00000477489 SSH1Q8WYL5 1049 aa8.5□□□□□ -1.05
LDB3-206ENST00000477489 MBIPQ9NS73 344 aa8.5□□□□□ -1.05
LDB3-206ENST00000477489 SPATA31A3Q5VYP0 1347 aa8.5□□□□□ -1.05
LDB3-206ENST00000477489 DSG2Q14126 1118 aa8.49□□□□□ -1.05
LDB3-206ENST00000477489 MTHFSDQ2M296 383 aaKnown RBP8.49□□□□□ -1.05
LDB3-206ENST00000477489 TWISTNBQ3B726 338 aaPredicted RBP8.49□□□□□ -1.05
LDB3-206ENST00000477489 PLPP6Q8IY26 295 aa8.49□□□□□ -1.05
LDB3-206ENST00000477489 API5Q9BZZ5 524 aaKnown RBP8.49□□□□□ -1.05
LDB3-206ENST00000477489 LRP5O75197 1615 aa8.49□□□□□ -1.05
LDB3-206ENST00000477489 SOS2Q07890 1332 aaPredicted RBP8.49□□□□□ -1.05
LDB3-206ENST00000477489 CEMIPQ8WUJ3 1361 aa8.48□□□□□ -1.05
LDB3-206ENST00000477489 HOXB7P09629 217 aa8.48□□□□□ -1.05
LDB3-206ENST00000477489 PLEKHO1Q53GL0 409 aaPredicted RBP8.48□□□□□ -1.05
LDB3-206ENST00000477489 FRAT1Q92837 279 aaPredicted RBP8.48□□□□□ -1.05
LDB3-206ENST00000477489 PTPRCP08575 1304 aa8.48□□□□□ -1.05
LDB3-206ENST00000477489 KDM3BQ7LBC6 1761 aa8.48□□□□□ -1.05
LDB3-206ENST00000477489 TRIM27P14373 513 aa8.47□□□□□ -1.05
LDB3-206ENST00000477489 AKAP4Q5JQC9 854 aa8.47□□□□□ -1.05
LDB3-206ENST00000477489 NUTM2GQ5VZR2 741 aa8.47□□□□□ -1.05
LDB3-206ENST00000477489 MRPL50Q8N5N7 158 aaKnown RBP8.47□□□□□ -1.05
LDB3-206ENST00000477489 PTCD2Q8WV60 388 aaKnown RBP8.47□□□□□ -1.05
LDB3-206ENST00000477489 RWDD1Q9H446 243 aaPredicted RBP8.47□□□□□ -1.05
LDB3-206ENST00000477489 N4BP2Q86UW6 1770 aaPredicted RBP8.47□□□□□ -1.05
LDB3-206ENST00000477489 ABCC4O15439 1325 aa8.47□□□□□ -1.05
LDB3-206ENST00000477489 AFF2P51816 1311 aa8.47□□□□□ -1.05
LDB3-206ENST00000477489 ABCA3Q99758 1704 aa8.46□□□□□ -1.05
LDB3-206ENST00000477489 RGPD2P0DJD1 1756 aa8.46□□□□□ -1.05
LDB3-206ENST00000477489 VIRMAQ69YN4 1812 aaKnown RBP8.46□□□□□ -1.06
LDB3-206ENST00000477489 HDAC1Q13547 482 aaPredicted RBP8.46□□□□□ -1.06
LDB3-206ENST00000477489 BRINP3Q76B58 766 aa8.46□□□□□ -1.06
LDB3-206ENST00000477489 PANK1Q8TE04 598 aa8.46□□□□□ -1.06
LDB3-206ENST00000477489 CRISPLD2Q9H0B8 497 aa8.46□□□□□ -1.06
LDB3-206ENST00000477489 SLAIN2Q9P270 581 aa8.46□□□□□ -1.06
LDB3-206ENST00000477489 NOB1Q9ULX3 412 aaKnown RBP8.46□□□□□ -1.06
LDB3-206ENST00000477489 COG6Q9Y2V7 657 aa8.46□□□□□ -1.06
LDB3-206ENST00000477489 LAS1LQ9Y4W2 734 aaKnown RBP8.46□□□□□ -1.06
LDB3-206ENST00000477489 AHDC1Q5TGY3 1603 aaPredicted RBP8.46□□□□□ -1.06
LDB3-206ENST00000477489 PKD1L3Q7Z443 1732 aa8.46□□□□□ -1.06
LDB3-206ENST00000477489 PARP4Q9UKK3 1724 aaKnown RBP8.46□□□□□ -1.06
LDB3-206ENST00000477489 RGPD5Q99666 1765 aa8.45□□□□□ -1.06
LDB3-206ENST00000477489 FAM83GA6ND36 823 aa8.45□□□□□ -1.06
LDB3-206ENST00000477489 TAF7Q15545 349 aaPredicted RBP8.45□□□□□ -1.06
LDB3-206ENST00000477489 NBPF6Q5VWK0 638 aa8.45□□□□□ -1.06
LDB3-206ENST00000477489 ANKRD24Q8TF21 1146 aa8.45□□□□□ -1.06
LDB3-206ENST00000477489 NBPF4Q96M43 638 aa8.45□□□□□ -1.06
LDB3-206ENST00000477489 THUMPD2Q9BTF0 503 aaKnown RBP8.45□□□□□ -1.06
LDB3-206ENST00000477489 TSPYL4Q9UJ04 414 aa8.45□□□□□ -1.06
LDB3-206ENST00000477489 LHX6Q9UPM6 363 aa8.45□□□□□ -1.06
LDB3-206ENST00000477489 SIPA1L3O60292 1781 aaPredicted RBP8.45□□□□□ -1.06
LDB3-206ENST00000477489 PXDNLA1KZ92 1463 aa8.45□□□□□ -1.06
LDB3-206ENST00000477489 RLBP1P12271 317 aa8.44□□□□□ -1.06
LDB3-206ENST00000477489 RBM6P78332 1123 aaKnown RBP8.44□□□□□ -1.06
LDB3-206ENST00000477489 MCM10Q7L590 875 aa8.44□□□□□ -1.06
LDB3-206ENST00000477489 C8orf58Q8NAV2 365 aa8.44□□□□□ -1.06
LDB3-206ENST00000477489 RBM19Q9Y4C8 960 aaKnown RBP8.44□□□□□ -1.06
LDB3-206ENST00000477489 COL22A1Q8NFW1 1626 aaPredicted RBP8.43□□□□□ -1.06
LDB3-206ENST00000477489 SCN11AQ9UI33 1791 aa8.43□□□□□ -1.06
LDB3-206ENST00000477489 HSP90AB1P08238 724 aaKnown RBP8.43□□□□□ -1.06
LDB3-206ENST00000477489 C1orf141Q5JVX7 400 aa8.43□□□□□ -1.06
LDB3-206ENST00000477489 IFFO2Q5TF58 517 aa8.43□□□□□ -1.06
LDB3-206ENST00000477489 CCDC30Q5VVM6 783 aa8.43□□□□□ -1.06
LDB3-206ENST00000477489 LMOD2Q6P5Q4 547 aa8.43□□□□□ -1.06
LDB3-206ENST00000477489 ITPRIPQ8IWB1 547 aa8.43□□□□□ -1.06
LDB3-206ENST00000477489 BCL2L13Q9BXK5 485 aa8.43□□□□□ -1.06
LDB3-206ENST00000477489 QTRT2Q9H974 415 aaKnown RBP8.43□□□□□ -1.06
LDB3-206ENST00000477489 ZBTB40Q9NUA8 1239 aa8.43□□□□□ -1.06
LDB3-206ENST00000477489 MRC1P22897 1456 aa8.43□□□□□ -1.06
LDB3-206ENST00000477489 XPCQ01831 940 aaPredicted RBP8.42□□□□□ -1.06
LDB3-206ENST00000477489 DCTN1Q14203 1278 aa8.42□□□□□ -1.06
LDB3-206ENST00000477489 INTS3Q68E01 1043 aaKnown RBP8.42□□□□□ -1.06
LDB3-206ENST00000477489 TMEM57Q8N5G2 664 aa8.42□□□□□ -1.06
LDB3-206ENST00000477489 TSPYL6Q8N831 410 aa8.42□□□□□ -1.06
LDB3-206ENST00000477489 IL17REQ8NFR9 667 aa8.42□□□□□ -1.06
LDB3-206ENST00000477489 RAPGEF4Q8WZA2 1011 aa8.42□□□□□ -1.06
LDB3-206ENST00000477489 LTV1Q96GA3 475 aaPredicted RBP8.42□□□□□ -1.06
LDB3-206ENST00000477489 STK31Q9BXU1 1019 aa8.42□□□□□ -1.06
LDB3-206ENST00000477489 SPG7Q9UQ90 795 aa8.42□□□□□ -1.06
LDB3-206ENST00000477489 IBTKQ9P2D0 1353 aaPredicted RBP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms