RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TM4SF1P30408 202 aa18.86■□□□□ 0.61
UPF3A-204ENST00000475218 USPL1Q5W0Q7 1092 aa18.86■□□□□ 0.61
UPF3A-204ENST00000475218 MCM10Q7L590 875 aa18.86■□□□□ 0.61
UPF3A-204ENST00000475218 DCTN1Q14203 1278 aa18.85■□□□□ 0.61
UPF3A-204ENST00000475218 DLG5Q8TDM6 1919 aa18.85■□□□□ 0.61
UPF3A-204ENST00000475218 TTC5Q8N0Z6 440 aa18.84■□□□□ 0.61
UPF3A-204ENST00000475218 PLEKHF1Q96S99 279 aa18.84■□□□□ 0.61
UPF3A-204ENST00000475218 A0A0G2JLW4 131 aa18.83■□□□□ 0.61
UPF3A-204ENST00000475218 POLRMTO00411 1230 aaKnown RBP18.83■□□□□ 0.61
UPF3A-204ENST00000475218 KCNA3P22001 575 aa18.83■□□□□ 0.61
UPF3A-204ENST00000475218 EIF5P55010 431 aaKnown RBP18.83■□□□□ 0.61
UPF3A-204ENST00000475218 PARP3Q9Y6F1 533 aa18.83■□□□□ 0.61
UPF3A-204ENST00000475218 AFDNP55196 1824 aaKnown RBP18.83■□□□□ 0.6
UPF3A-204ENST00000475218 TGFB2P61812 414 aa18.83■□□□□ 0.6
UPF3A-204ENST00000475218 NARFQ9UHQ1 456 aa18.83■□□□□ 0.6
UPF3A-204ENST00000475218 NRXN2Q9P2S2 1712 aa18.83■□□□□ 0.6
UPF3A-204ENST00000475218 BTBD11A6QL63 1104 aa18.82■□□□□ 0.6
UPF3A-204ENST00000475218 DPEP1P16444 411 aa18.82■□□□□ 0.6
UPF3A-204ENST00000475218 CANXP27824 592 aaKnown RBP18.82■□□□□ 0.6
UPF3A-204ENST00000475218 PRAMEF22A3QJZ6 481 aa18.81■□□□□ 0.6
UPF3A-204ENST00000475218 DDX10Q13206 875 aaKnown RBP18.81■□□□□ 0.6
UPF3A-204ENST00000475218 ADCY9O60503 1353 aa18.81■□□□□ 0.6
UPF3A-204ENST00000475218 NFIXQ14938 502 aa18.81■□□□□ 0.6
UPF3A-204ENST00000475218 FMNL2Q96PY5 1086 aa18.81■□□□□ 0.6
UPF3A-204ENST00000475218 SCN7AQ01118 1682 aa18.8■□□□□ 0.6
UPF3A-204ENST00000475218 ZPR1O75312 459 aa18.8■□□□□ 0.6
UPF3A-204ENST00000475218 STARD3NLO95772 234 aa18.8■□□□□ 0.6
UPF3A-204ENST00000475218 HTATSF1O43719 755 aaKnown RBP18.79■□□□□ 0.6
UPF3A-204ENST00000475218 A1BGP04217 495 aa18.79■□□□□ 0.6
UPF3A-204ENST00000475218 USP16Q9Y5T5 823 aa18.78■□□□□ 0.6
UPF3A-204ENST00000475218 RTF1Q92541 710 aaKnown RBP18.78■□□□□ 0.6
UPF3A-204ENST00000475218 TEX13AQ9BXU3 409 aaPredicted RBP18.78■□□□□ 0.6
UPF3A-204ENST00000475218 KDM3BQ7LBC6 1761 aa18.77■□□□□ 0.59
UPF3A-204ENST00000475218 ARFGEF1Q9Y6D6 1849 aa18.76■□□□□ 0.59
UPF3A-204ENST00000475218 RALBP1Q15311 655 aa18.76■□□□□ 0.59
UPF3A-204ENST00000475218 ATP10DQ9P241 1426 aa18.76■□□□□ 0.59
UPF3A-204ENST00000475218 IL6STP40189 918 aaPredicted RBP18.76■□□□□ 0.59
UPF3A-204ENST00000475218 MIS18AQ9NYP9 233 aa18.76■□□□□ 0.59
UPF3A-204ENST00000475218 BCS1LQ9Y276 419 aa18.76■□□□□ 0.59
UPF3A-204ENST00000475218 BCORQ6W2J9 1755 aa18.75■□□□□ 0.59
UPF3A-204ENST00000475218 CARMIL3Q8ND23 1372 aa18.75■□□□□ 0.59
UPF3A-204ENST00000475218 CHRNA5P30532 468 aa18.75■□□□□ 0.59
UPF3A-204ENST00000475218 PIP4K2AP48426 406 aaPredicted RBP18.75■□□□□ 0.59
UPF3A-204ENST00000475218 THUMPD2Q9BTF0 503 aaKnown RBP18.75■□□□□ 0.59
UPF3A-204ENST00000475218 TBC1D2BQ9UPU7 963 aa18.75■□□□□ 0.59
UPF3A-204ENST00000475218 NFE2L2Q16236 605 aa18.74■□□□□ 0.59
UPF3A-204ENST00000475218 TAF7Q15545 349 aaPredicted RBP18.73■□□□□ 0.59
UPF3A-204ENST00000475218 TBC1D9BQ66K14 1250 aa18.73■□□□□ 0.59
UPF3A-204ENST00000475218 ANKRD31Q8N7Z5 1873 aa18.73■□□□□ 0.59
UPF3A-204ENST00000475218 DLEC1Q9Y238 1755 aa18.73■□□□□ 0.59
UPF3A-204ENST00000475218 CAMTA2O94983 1202 aa18.73■□□□□ 0.59
UPF3A-204ENST00000475218 SERPINB2P05120 415 aa18.73■□□□□ 0.59
UPF3A-204ENST00000475218 LAMB4A4D0S4 1761 aa18.72■□□□□ 0.59
UPF3A-204ENST00000475218 A0A087WZG4 1122 aa18.72■□□□□ 0.59
UPF3A-204ENST00000475218 NBPF26B4DH59 902 aa18.72■□□□□ 0.59
UPF3A-204ENST00000475218 SNRPA1P09661 255 aaKnown RBP18.72■□□□□ 0.59
UPF3A-204ENST00000475218 NBPF10Q6P3W6 841 aaKnown RBP18.72■□□□□ 0.59
UPF3A-204ENST00000475218 NBPF15Q8N660 670 aa18.72■□□□□ 0.59
UPF3A-204ENST00000475218 BICDL1Q6ZP65 573 aa18.71■□□□□ 0.59
UPF3A-204ENST00000475218 ZNF330Q9Y3S2 320 aaPredicted RBP18.71■□□□□ 0.59
UPF3A-204ENST00000475218 PIM2Q9P1W9 311 aa18.7■□□□□ 0.58
UPF3A-204ENST00000475218 MYBBP1AQ9BQG0 1328 aaKnown RBP18.7■□□□□ 0.58
UPF3A-204ENST00000475218 C1QTNF8P60827 252 aa18.69■□□□□ 0.58
UPF3A-204ENST00000475218 COL11A2P13942 1736 aaPredicted RBP18.68■□□□□ 0.58
UPF3A-204ENST00000475218 DALRD3Q5D0E6 543 aaKnown RBP18.68■□□□□ 0.58
UPF3A-204ENST00000475218 ARHGAP27Q6ZUM4 889 aa18.68■□□□□ 0.58
UPF3A-204ENST00000475218 DZIP3Q86Y13 1208 aaKnown RBP18.68■□□□□ 0.58
UPF3A-204ENST00000475218 EIF4A1P60842 406 aaKnown RBP18.67■□□□□ 0.58
UPF3A-204ENST00000475218 CEP350Q5VT06 3117 aa18.67■□□□□ 0.58
UPF3A-204ENST00000475218 MAPK8IP3Q9UPT6 1336 aa18.66■□□□□ 0.58
UPF3A-204ENST00000475218 GIGYF1O75420 1035 aaPredicted RBP18.66■□□□□ 0.58
UPF3A-204ENST00000475218 NEFMP07197 916 aa18.66■□□□□ 0.58
UPF3A-204ENST00000475218 PRR5LQ6MZQ0 368 aa18.66■□□□□ 0.58
UPF3A-204ENST00000475218 CCDC24Q8N4L8 307 aa18.66■□□□□ 0.58
UPF3A-204ENST00000475218 ZNF526Q8TF50 670 aaPredicted RBP18.65■□□□□ 0.58
UPF3A-204ENST00000475218 SBF1O95248 1867 aa18.65■□□□□ 0.58
UPF3A-204ENST00000475218 TMPOP42166 694 aaKnown RBP18.65■□□□□ 0.58
UPF3A-204ENST00000475218 PNNQ9H307 717 aaKnown RBP18.65■□□□□ 0.58
UPF3A-204ENST00000475218 PRKRIP1Q9H875 184 aaPredicted RBP18.65■□□□□ 0.58
UPF3A-204ENST00000475218 PNISRQ8TF01 805 aaKnown RBP18.64■□□□□ 0.57
UPF3A-204ENST00000475218 RIPK4P57078 832 aa18.63■□□□□ 0.57
UPF3A-204ENST00000475218 C2CD5Q86YS7 1000 aa18.63■□□□□ 0.57
UPF3A-204ENST00000475218 CCDC146Q8IYE0 955 aa18.63■□□□□ 0.57
UPF3A-204ENST00000475218 PRELPP51888 382 aa18.63■□□□□ 0.57
UPF3A-204ENST00000475218 GPBP1L1Q9HC44 474 aaPredicted RBP18.63■□□□□ 0.57
UPF3A-204ENST00000475218 RRP7AQ9Y3A4 280 aaKnown RBP18.63■□□□□ 0.57
UPF3A-204ENST00000475218 SETDB2Q96T68 719 aa18.62■□□□□ 0.57
UPF3A-204ENST00000475218 BRIP1Q9BX63 1249 aa18.62■□□□□ 0.57
UPF3A-204ENST00000475218 HLFQ16534 295 aa18.61■□□□□ 0.57
UPF3A-204ENST00000475218 C9orf131Q5VYM1 1079 aa18.61■□□□□ 0.57
UPF3A-204ENST00000475218 CLEC4GQ6UXB4 293 aa18.61■□□□□ 0.57
UPF3A-204ENST00000475218 ADAMTS8Q9UP79 889 aa18.61■□□□□ 0.57
UPF3A-204ENST00000475218 KIF3CO14782 793 aa18.6■□□□□ 0.57
UPF3A-204ENST00000475218 TRIM35Q9UPQ4 493 aa18.6■□□□□ 0.57
UPF3A-204ENST00000475218 H0YIN7 160 aa18.59■□□□□ 0.57
UPF3A-204ENST00000475218 RASSF7Q02833 373 aa18.59■□□□□ 0.57
UPF3A-204ENST00000475218 LRP10Q7Z4F1 713 aa18.59■□□□□ 0.57
UPF3A-204ENST00000475218 NPM2Q86SE8 214 aaKnown RBP18.59■□□□□ 0.57
UPF3A-204ENST00000475218 TTLL6Q8N841 843 aa18.59■□□□□ 0.57
UPF3A-204ENST00000475218 CNBD1Q8NA66 436 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms