RNA–Protein interactions for RNA: ENST00000475208.5

TMEM54-205, Transcript of transmembrane protein 54, humanhuman

TSL 1 (best)

Gene TMEM54, Length 768 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM54-205ENST00000475208 COL15A1P39059 1388 aa33.69■■■□□ 2.98
TMEM54-205ENST00000475208 NMRK2Q9NPI5 230 aa33.67■■■□□ 2.98
TMEM54-205ENST00000475208 COL3A1P02461 1466 aaPredicted RBP33.66■■■□□ 2.98
TMEM54-205ENST00000475208 VSIG10Q8N0Z9 540 aa33.66■■■□□ 2.98
TMEM54-205ENST00000475208 NARFQ9UHQ1 456 aa33.66■■■□□ 2.98
TMEM54-205ENST00000475208 UBR2Q8IWV8 1755 aa33.65■■■□□ 2.98
TMEM54-205ENST00000475208 TOMM70O94826 608 aa33.65■■■□□ 2.98
TMEM54-205ENST00000475208 NFIXQ14938 502 aa33.64■■■□□ 2.98
TMEM54-205ENST00000475208 CNGB1Q14028 1251 aaPredicted RBP33.62■■■□□ 2.97
TMEM54-205ENST00000475208 AFDNP55196 1824 aaKnown RBP33.62■■■□□ 2.97
TMEM54-205ENST00000475208 NPC1L1Q9UHC9 1359 aa33.61■■■□□ 2.97
TMEM54-205ENST00000475208 BCL2L12Q9HB09 334 aa33.61■■■□□ 2.97
TMEM54-205ENST00000475208 NRXN2Q9P2S2 1712 aa33.61■■■□□ 2.97
TMEM54-205ENST00000475208 U2SURPO15042 1029 aaKnown RBP33.6■■■□□ 2.97
TMEM54-205ENST00000475208 TTC5Q8N0Z6 440 aa33.6■■■□□ 2.97
TMEM54-205ENST00000475208 RNF181Q9P0P0 153 aa33.6■■■□□ 2.97
TMEM54-205ENST00000475208 CANXP27824 592 aaKnown RBP33.59■■■□□ 2.97
TMEM54-205ENST00000475208 APLP1P51693 650 aa33.57■■■□□ 2.96
TMEM54-205ENST00000475208 STARD3NLO95772 234 aa33.56■■■□□ 2.96
TMEM54-205ENST00000475208 SERPINB2P05120 415 aa33.56■■■□□ 2.96
TMEM54-205ENST00000475208 GAS2L2Q8NHY3 880 aa33.56■■■□□ 2.96
TMEM54-205ENST00000475208 TEFQ10587 303 aa33.55■■■□□ 2.96
TMEM54-205ENST00000475208 IFFO2Q5TF58 517 aa33.55■■■□□ 2.96
TMEM54-205ENST00000475208 GNAT3A8MTJ3 354 aa33.54■■■□□ 2.96
TMEM54-205ENST00000475208 IL17REQ8NFR9 667 aa33.54■■■□□ 2.96
TMEM54-205ENST00000475208 KDM2BQ8NHM5 1336 aa33.53■■■□□ 2.96
TMEM54-205ENST00000475208 EIF5P55010 431 aaKnown RBP33.53■■■□□ 2.96
TMEM54-205ENST00000475208 ZNF496Q96IT1 587 aaPredicted RBP33.53■■■□□ 2.96
TMEM54-205ENST00000475208 SBF1O95248 1867 aa33.52■■■□□ 2.96
TMEM54-205ENST00000475208 DLEC1Q9Y238 1755 aa33.52■■■□□ 2.96
TMEM54-205ENST00000475208 HEG1Q9ULI3 1381 aa33.52■■■□□ 2.96
TMEM54-205ENST00000475208 C16orf71Q8IYS4 520 aaPredicted RBP33.52■■■□□ 2.96
TMEM54-205ENST00000475208 RBM46Q8TBY0 533 aaKnown RBP33.52■■■□□ 2.96
TMEM54-205ENST00000475208 SIPA1L3O60292 1781 aaPredicted RBP33.52■■■□□ 2.96
TMEM54-205ENST00000475208 CARMIL3Q8ND23 1372 aa33.51■■■□□ 2.96
TMEM54-205ENST00000475208 RASSF7Q02833 373 aa33.51■■■□□ 2.95
TMEM54-205ENST00000475208 ZNF790Q6PG37 636 aa33.51■■■□□ 2.95
TMEM54-205ENST00000475208 A0A087WZG4 1122 aa33.5■■■□□ 2.95
TMEM54-205ENST00000475208 BICDL1Q6ZP65 573 aa33.5■■■□□ 2.95
TMEM54-205ENST00000475208 C2CD5Q86YS7 1000 aa33.48■■■□□ 2.95
TMEM54-205ENST00000475208 SCN7AQ01118 1682 aa33.48■■■□□ 2.95
TMEM54-205ENST00000475208 TTLL6Q8N841 843 aa33.47■■■□□ 2.95
TMEM54-205ENST00000475208 TNRC6CQ9HCJ0 1690 aaKnown RBP33.47■■■□□ 2.95
TMEM54-205ENST00000475208 TEX13AQ9BXU3 409 aaPredicted RBP33.46■■■□□ 2.95
TMEM54-205ENST00000475208 ZNF330Q9Y3S2 320 aaPredicted RBP33.46■■■□□ 2.95
TMEM54-205ENST00000475208 TBC1D9BQ66K14 1250 aa33.45■■■□□ 2.95
TMEM54-205ENST00000475208 RRAGCQ9HB90 399 aa33.45■■■□□ 2.95
TMEM54-205ENST00000475208 CEMIPQ8WUJ3 1361 aa33.45■■■□□ 2.94
TMEM54-205ENST00000475208 H0YIN7 160 aa33.44■■■□□ 2.94
TMEM54-205ENST00000475208 FMNL2Q96PY5 1086 aa33.44■■■□□ 2.94
TMEM54-205ENST00000475208 ZC3H4Q9UPT8 1303 aaKnown RBP33.44■■■□□ 2.94
TMEM54-205ENST00000475208 WDR90Q96KV7 1748 aa33.43■■■□□ 2.94
TMEM54-205ENST00000475208 PRKAR2BP31323 418 aa33.43■■■□□ 2.94
TMEM54-205ENST00000475208 DNAJC5GQ8N7S2 189 aa33.43■■■□□ 2.94
TMEM54-205ENST00000475208 LMNB1P20700 586 aa33.42■■■□□ 2.94
TMEM54-205ENST00000475208 FSTL1Q12841 308 aa33.42■■■□□ 2.94
TMEM54-205ENST00000475208 PHACTR3Q96KR7 559 aa33.42■■■□□ 2.94
TMEM54-205ENST00000475208 CFAP53Q96M91 514 aa33.42■■■□□ 2.94
TMEM54-205ENST00000475208 TBC1D2BQ9UPU7 963 aa33.42■■■□□ 2.94
TMEM54-205ENST00000475208 IL6STP40189 918 aaPredicted RBP33.41■■■□□ 2.94
TMEM54-205ENST00000475208 RSPH6AQ9H0K4 717 aa33.41■■■□□ 2.94
TMEM54-205ENST00000475208 ANKRD31Q8N7Z5 1873 aa33.4■■■□□ 2.94
TMEM54-205ENST00000475208 PRELPP51888 382 aa33.4■■■□□ 2.94
TMEM54-205ENST00000475208 A1BGP04217 495 aa33.39■■■□□ 2.94
TMEM54-205ENST00000475208 BTBD11A6QL63 1104 aa33.38■■■□□ 2.93
TMEM54-205ENST00000475208 KCNQ3O43525 872 aa33.38■■■□□ 2.93
TMEM54-205ENST00000475208 PRR5LQ6MZQ0 368 aa33.37■■■□□ 2.93
TMEM54-205ENST00000475208 NPM2Q86SE8 214 aaKnown RBP33.37■■■□□ 2.93
TMEM54-205ENST00000475208 TIAM2Q8IVF5 1701 aa33.36■■■□□ 2.93
TMEM54-205ENST00000475208 NFKBIEO00221 500 aa33.36■■■□□ 2.93
TMEM54-205ENST00000475208 CCDC24Q8N4L8 307 aa33.36■■■□□ 2.93
TMEM54-205ENST00000475208 BRIP1Q9BX63 1249 aa33.36■■■□□ 2.93
TMEM54-205ENST00000475208 HTRA3P83110 453 aa33.35■■■□□ 2.93
TMEM54-205ENST00000475208 ZNF622Q969S3 477 aaKnown RBP eCLIP33.35■■■□□ 2.93
TMEM54-205ENST00000475208 PDZRN3Q9UPQ7 1066 aa33.35■■■□□ 2.93
TMEM54-205ENST00000475208 NUDCQ9Y266 331 aa33.35■■■□□ 2.93
TMEM54-205ENST00000475208 COL11A2P13942 1736 aaPredicted RBP33.35■■■□□ 2.93
TMEM54-205ENST00000475208 CAMTA2O94983 1202 aa33.34■■■□□ 2.93
TMEM54-205ENST00000475208 PDE6BP35913 854 aa33.34■■■□□ 2.93
TMEM54-205ENST00000475208 GLTPD2A6NH11 291 aa33.33■■■□□ 2.93
TMEM54-205ENST00000475208 BCORQ6W2J9 1755 aa33.32■■■□□ 2.92
TMEM54-205ENST00000475208 SMC1BQ8NDV3 1235 aa33.32■■■□□ 2.92
TMEM54-205ENST00000475208 SETDB2Q96T68 719 aa33.32■■■□□ 2.92
TMEM54-205ENST00000475208 CCDC88AQ3V6T2 1871 aa33.31■■■□□ 2.92
TMEM54-205ENST00000475208 U2AF1L5P0DN76 240 aaPredicted RBP33.31■■■□□ 2.92
TMEM54-205ENST00000475208 U2AF1Q01081 240 aaKnown RBP eCLIP33.31■■■□□ 2.92
TMEM54-205ENST00000475208 DZIP3Q86Y13 1208 aaKnown RBP33.3■■■□□ 2.92
TMEM54-205ENST00000475208 CNBD1Q8NA66 436 aa33.3■■■□□ 2.92
TMEM54-205ENST00000475208 ZNF219Q9P2Y4 722 aaPredicted RBP33.3■■■□□ 2.92
TMEM54-205ENST00000475208 USP16Q9Y5T5 823 aa33.3■■■□□ 2.92
TMEM54-205ENST00000475208 NPHP1O15259 732 aa33.29■■■□□ 2.92
TMEM54-205ENST00000475208 C21orf2O43822 256 aa33.29■■■□□ 2.92
TMEM54-205ENST00000475208 PPP2R1AP30153 589 aa33.29■■■□□ 2.92
TMEM54-205ENST00000475208 VEGFAP15692 232 aaPredicted RBP33.28■■■□□ 2.92
TMEM54-205ENST00000475208 PIP4K2AP48426 406 aaPredicted RBP33.28■■■□□ 2.92
TMEM54-205ENST00000475208 MCM10Q7L590 875 aa33.28■■■□□ 2.92
TMEM54-205ENST00000475208 RTF1Q92541 710 aaKnown RBP33.28■■■□□ 2.92
TMEM54-205ENST00000475208 KLRG1Q96E93 195 aa33.28■■■□□ 2.92
TMEM54-205ENST00000475208 PRAMEF22A3QJZ6 481 aa33.27■■■□□ 2.92
TMEM54-205ENST00000475208 ST5P78524 1137 aa33.26■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms