RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 TUBGCP6Q96RT7 1819 aa15.2■□□□□ 0.02
SYNE1-222ENST00000474655 SLC39A6Q13433 755 aa15.2■□□□□ 0.02
SYNE1-222ENST00000474655 PROSER3Q2NL68 480 aa15.2■□□□□ 0.02
SYNE1-222ENST00000474655 KSR2Q6VAB6 950 aa15.2■□□□□ 0.02
SYNE1-222ENST00000474655 ZCRB1Q8TBF4 217 aaKnown RBP15.2■□□□□ 0.02
SYNE1-222ENST00000474655 ALDH1L1O75891 902 aa15.19■□□□□ 0.02
SYNE1-222ENST00000474655 ANXA1P04083 346 aa15.19■□□□□ 0.02
SYNE1-222ENST00000474655 SSH3Q8TE77 659 aa15.19■□□□□ 0.02
SYNE1-222ENST00000474655 OSBPL3Q9H4L5 887 aa15.19■□□□□ 0.02
SYNE1-222ENST00000474655 LRRFIP2Q9Y608 721 aaKnown RBP15.19■□□□□ 0.02
SYNE1-222ENST00000474655 PNMA6EA0A0J9YXQ4 647 aa15.19■□□□□ 0.02
SYNE1-222ENST00000474655 IL2RBP14784 551 aa15.19■□□□□ 0.02
SYNE1-222ENST00000474655 ZNF496Q96IT1 587 aaPredicted RBP15.19■□□□□ 0.02
SYNE1-222ENST00000474655 ERVV-2B6SEH9 535 aa15.18■□□□□ 0.02
SYNE1-222ENST00000474655 GSPT1P15170 499 aaKnown RBP15.18■□□□□ 0.02
SYNE1-222ENST00000474655 POLA2Q14181 598 aa15.18■□□□□ 0.02
SYNE1-222ENST00000474655 TTC22Q5TAA0 569 aa15.18■□□□□ 0.02
SYNE1-222ENST00000474655 SNRPA1P09661 255 aaKnown RBP15.17■□□□□ 0.02
SYNE1-222ENST00000474655 CABP4P57796 275 aa15.17■□□□□ 0.02
SYNE1-222ENST00000474655 C16orf71Q8IYS4 520 aaPredicted RBP15.17■□□□□ 0.02
SYNE1-222ENST00000474655 FMNL2Q96PY5 1086 aa15.17■□□□□ 0.02
SYNE1-222ENST00000474655 SALL3Q9BXA9 1300 aa15.17■□□□□ 0.02
SYNE1-222ENST00000474655 LARP1Q6PKG0 1096 aaKnown RBP15.16■□□□□ 0.02
SYNE1-222ENST00000474655 LRP10Q7Z4F1 713 aa15.16■□□□□ 0.02
SYNE1-222ENST00000474655 C22orf23Q9BZE7 217 aa15.16■□□□□ 0.02
SYNE1-222ENST00000474655 MAP3K2Q9Y2U5 619 aa15.16■□□□□ 0.02
SYNE1-222ENST00000474655 PLCH1Q4KWH8 1693 aa15.16■□□□□ 0.02
SYNE1-222ENST00000474655 COL16A1Q07092 1604 aaPredicted RBP15.16■□□□□ 0.02
SYNE1-222ENST00000474655 UTYO14607 1347 aa15.16■□□□□ 0.02
SYNE1-222ENST00000474655 DDX58O95786 925 aaKnown RBP15.16■□□□□ 0.02
SYNE1-222ENST00000474655 NBPF7P0C2Y1 421 aaPredicted RBP15.16■□□□□ 0.02
SYNE1-222ENST00000474655 RBM25P49756 843 aaKnown RBP15.16■□□□□ 0.02
SYNE1-222ENST00000474655 MTX1Q13505 466 aa15.16■□□□□ 0.02
SYNE1-222ENST00000474655 TTC5Q8N0Z6 440 aa15.16■□□□□ 0.02
SYNE1-222ENST00000474655 TOGARAM1Q9Y4F4 1720 aa15.15■□□□□ 0.02
SYNE1-222ENST00000474655 SMARCA5O60264 1052 aaPredicted RBP15.15■□□□□ 0.02
SYNE1-222ENST00000474655 EIF5BO60841 1220 aaKnown RBP15.15■□□□□ 0.02
SYNE1-222ENST00000474655 MFAP1P55081 439 aaKnown RBP15.15■□□□□ 0.02
SYNE1-222ENST00000474655 TBC1D9Q6ZT07 1266 aa15.15■□□□□ 0.02
SYNE1-222ENST00000474655 LINS1Q8NG48 757 aa15.15■□□□□ 0.02
SYNE1-222ENST00000474655 OTUD7AQ8TE49 926 aaPredicted RBP15.15■□□□□ 0.02
SYNE1-222ENST00000474655 CDC45O75419 566 aa15.14■□□□□ 0.01
SYNE1-222ENST00000474655 EVA1CP58658 441 aa15.14■□□□□ 0.01
SYNE1-222ENST00000474655 LRRCC1Q9C099 1032 aa15.14■□□□□ 0.01
SYNE1-222ENST00000474655 HDAC5Q9UQL6 1122 aa15.14■□□□□ 0.01
SYNE1-222ENST00000474655 EXOC6BQ9Y2D4 811 aa15.14■□□□□ 0.01
SYNE1-222ENST00000474655 KCPQ6ZWJ8 1503 aa15.14■□□□□ 0.01
SYNE1-222ENST00000474655 PPP1R42Q7Z4L9 355 aa15.13■□□□□ 0.01
SYNE1-222ENST00000474655 DAXXQ9UER7 740 aaPredicted RBP15.13■□□□□ 0.01
SYNE1-222ENST00000474655 USP16Q9Y5T5 823 aa15.13■□□□□ 0.01
SYNE1-222ENST00000474655 ARFGEF2Q9Y6D5 1785 aa15.13■□□□□ 0.01
SYNE1-222ENST00000474655 ERBB4Q15303 1308 aa15.13■□□□□ 0.01
SYNE1-222ENST00000474655 WNK3Q9BYP7 1800 aa15.13■□□□□ 0.01
SYNE1-222ENST00000474655 TNS2Q63HR2 1409 aa15.13■□□□□ 0.01
SYNE1-222ENST00000474655 RAB11FIP3O75154 756 aa15.13■□□□□ 0.01
SYNE1-222ENST00000474655 PDE1AP54750 535 aa15.13■□□□□ 0.01
SYNE1-222ENST00000474655 BECN1Q14457 450 aa15.13■□□□□ 0.01
SYNE1-222ENST00000474655 STRN4Q9NRL3 753 aa15.13■□□□□ 0.01
SYNE1-222ENST00000474655 DISP2A7MBM2 1401 aa15.12■□□□□ 0.01
SYNE1-222ENST00000474655 SLC4A3P48751 1232 aa15.11■□□□□ 0.01
SYNE1-222ENST00000474655 BTG4Q9NY30 223 aa15.11■□□□□ 0.01
SYNE1-222ENST00000474655 STAP2Q9UGK3 403 aa15.11■□□□□ 0.01
SYNE1-222ENST00000474655 ITGB4P16144 1822 aa15.11■□□□□ 0.01
SYNE1-222ENST00000474655 APBB1O00213 710 aa15.11■□□□□ 0.01
SYNE1-222ENST00000474655 SDSP20132 328 aa15.11■□□□□ 0.01
SYNE1-222ENST00000474655 AFDNP55196 1824 aaKnown RBP15.11■□□□□ 0.01
SYNE1-222ENST00000474655 PHLPP1O60346 1717 aa15.1■□□□□ 0.01
SYNE1-222ENST00000474655 SRGAP3O43295 1099 aa15.1■□□□□ 0.01
SYNE1-222ENST00000474655 CWF19L2Q2TBE0 894 aaKnown RBP15.1■□□□□ 0.01
SYNE1-222ENST00000474655 COPS6Q7L5N1 327 aa15.1■□□□□ 0.01
SYNE1-222ENST00000474655 XAGE3Q8WTP9 111 aa15.1■□□□□ 0.01
SYNE1-222ENST00000474655 LRP6O75581 1613 aa15.1■□□□□ 0.01
SYNE1-222ENST00000474655 AOX1Q06278 1338 aa15.1■□□□□ 0.01
SYNE1-222ENST00000474655 NUP188Q5SRE5 1749 aa15.09■□□□□ 0.01
SYNE1-222ENST00000474655 GRM8O00222 908 aa15.09■□□□□ 0.01
SYNE1-222ENST00000474655 IGKV5-2P06315 115 aa15.09■□□□□ 0.01
SYNE1-222ENST00000474655 RIC3Q7Z5B4 369 aa15.09■□□□□ 0.01
SYNE1-222ENST00000474655 METTL22Q9BUU2 404 aaPredicted RBP15.09■□□□□ 0.01
SYNE1-222ENST00000474655 C9orf78Q9NZ63 289 aaPredicted RBP15.09■□□□□ 0.01
SYNE1-222ENST00000474655 MYL6BP14649 208 aa15.08■□□□□ 0.01
SYNE1-222ENST00000474655 AIMP1Q12904 312 aaKnown RBP15.08■□□□□ 0.01
SYNE1-222ENST00000474655 HSP90AB4PQ58FF6 505 aa15.08■□□□□ 0.01
SYNE1-222ENST00000474655 ANKRD13DQ6ZTN6 518 aa15.08■□□□□ 0.01
SYNE1-222ENST00000474655 COL15A1P39059 1388 aa15.08■□□□□ 0
SYNE1-222ENST00000474655 NRAPQ86VF7 1730 aa15.08■□□□□ 0
SYNE1-222ENST00000474655 NEURL1BA8MQ27 555 aa15.08■□□□□ 0
SYNE1-222ENST00000474655 MX1P20591 662 aa15.08■□□□□ 0
SYNE1-222ENST00000474655 TBC1D2Q9BYX2 928 aa15.08■□□□□ 0
SYNE1-222ENST00000474655 SURF6O75683 361 aaKnown RBP15.07■□□□□ 0
SYNE1-222ENST00000474655 NEXNQ0ZGT2 675 aa15.07■□□□□ 0
SYNE1-222ENST00000474655 RHPN1Q8TCX5 695 aa15.07■□□□□ 0
SYNE1-222ENST00000474655 DDX54Q8TDD1 881 aaKnown RBP15.07■□□□□ 0
SYNE1-222ENST00000474655 KIF1BPQ96EK5 621 aa15.07■□□□□ 0
SYNE1-222ENST00000474655 KAZALD1Q96I82 304 aa15.07■□□□□ 0
SYNE1-222ENST00000474655 GCKRQ14397 625 aa15.06■□□□□ 0
SYNE1-222ENST00000474655 KIF2CQ99661 725 aa15.06■□□□□ 0
SYNE1-222ENST00000474655 AK9Q5TCS8 1911 aa15.06■□□□□ 0
SYNE1-222ENST00000474655 PLBD2Q8NHP8 589 aa15.06■□□□□ 0
SYNE1-222ENST00000474655 NBPF26B4DH59 902 aa15.05■□□□□ -0
SYNE1-222ENST00000474655 MYT1Q01538 1121 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms