RNA–Protein interactions for RNA: ENST00000474455.1

SMIM11A-204, Transcript of small integral membrane protein 11A, humanhuman

TSL 1 (best)

Gene SMIM11A, Length 1,857 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM11A-204ENST00000474455 CACNA1FO60840 1977 aa26.33■■□□□ 1.8
SMIM11A-204ENST00000474455 ZNF428Q96B54 188 aa26.32■■□□□ 1.8
SMIM11A-204ENST00000474455 RXRBP28702 533 aa26.3■■□□□ 1.8
SMIM11A-204ENST00000474455 HDGFL1Q5TGJ6 251 aa26.3■■□□□ 1.8
SMIM11A-204ENST00000474455 FMNL2Q96PY5 1086 aa26.3■■□□□ 1.8
SMIM11A-204ENST00000474455 USP16Q9Y5T5 823 aa26.3■■□□□ 1.8
SMIM11A-204ENST00000474455 SLC4A2P04920 1241 aa26.29■■□□□ 1.8
SMIM11A-204ENST00000474455 ANXA1P04083 346 aa26.28■■□□□ 1.8
SMIM11A-204ENST00000474455 G2E3Q7L622 706 aa26.28■■□□□ 1.8
SMIM11A-204ENST00000474455 CANXP27824 592 aaKnown RBP26.28■■□□□ 1.8
SMIM11A-204ENST00000474455 CLUAP1Q96AJ1 413 aa26.28■■□□□ 1.8
SMIM11A-204ENST00000474455 CCDC30Q5VVM6 783 aa26.27■■□□□ 1.8
SMIM11A-204ENST00000474455 KRT27Q7Z3Y8 459 aa26.27■■□□□ 1.8
SMIM11A-204ENST00000474455 BTAF1O14981 1849 aa26.26■■□□□ 1.79
SMIM11A-204ENST00000474455 HOXB7P09629 217 aa26.26■■□□□ 1.79
SMIM11A-204ENST00000474455 SNRPA1P09661 255 aaKnown RBP26.26■■□□□ 1.79
SMIM11A-204ENST00000474455 FAM161AQ3B820 660 aa26.26■■□□□ 1.79
SMIM11A-204ENST00000474455 SLC4A9Q96Q91 983 aa26.26■■□□□ 1.79
SMIM11A-204ENST00000474455 RBM42Q9BTD8 480 aaKnown RBP26.26■■□□□ 1.79
SMIM11A-204ENST00000474455 RLBP1P12271 317 aa26.25■■□□□ 1.79
SMIM11A-204ENST00000474455 BRPF1P55201 1214 aaPredicted RBP26.25■■□□□ 1.79
SMIM11A-204ENST00000474455 PANK1Q8TE04 598 aa26.25■■□□□ 1.79
SMIM11A-204ENST00000474455 CHPF2Q9P2E5 772 aa26.25■■□□□ 1.79
SMIM11A-204ENST00000474455 PIP4K2AP48426 406 aaPredicted RBP26.25■■□□□ 1.79
SMIM11A-204ENST00000474455 NHSQ6T4R5 1651 aa26.24■■□□□ 1.79
SMIM11A-204ENST00000474455 TRIM27P14373 513 aa26.24■■□□□ 1.79
SMIM11A-204ENST00000474455 PROSER3Q2NL68 480 aa26.24■■□□□ 1.79
SMIM11A-204ENST00000474455 SOS1Q07889 1333 aaPredicted RBP26.24■■□□□ 1.79
SMIM11A-204ENST00000474455 RGS12O14924 1447 aa26.24■■□□□ 1.79
SMIM11A-204ENST00000474455 LAMB4A4D0S4 1761 aa26.23■■□□□ 1.79
SMIM11A-204ENST00000474455 ZKSCAN2Q63HK3 967 aa26.23■■□□□ 1.79
SMIM11A-204ENST00000474455 PHAXQ9H814 394 aaKnown RBP26.23■■□□□ 1.79
SMIM11A-204ENST00000474455 STK31Q9BXU1 1019 aa26.22■■□□□ 1.79
SMIM11A-204ENST00000474455 ATF7IPQ6VMQ6 1270 aa26.21■■□□□ 1.79
SMIM11A-204ENST00000474455 KIF16BQ96L93 1317 aa26.21■■□□□ 1.79
SMIM11A-204ENST00000474455 PDIA6Q15084 440 aa26.21■■□□□ 1.79
SMIM11A-204ENST00000474455 DNAJC10Q8IXB1 793 aa26.19■■□□□ 1.78
SMIM11A-204ENST00000474455 DAXXQ9UER7 740 aaPredicted RBP26.19■■□□□ 1.78
SMIM11A-204ENST00000474455 TJP1Q07157 1748 aa26.18■■□□□ 1.78
SMIM11A-204ENST00000474455 COG6Q9Y2V7 657 aa26.18■■□□□ 1.78
SMIM11A-204ENST00000474455 A1BGP04217 495 aa26.17■■□□□ 1.78
SMIM11A-204ENST00000474455 MYL6BP14649 208 aa26.17■■□□□ 1.78
SMIM11A-204ENST00000474455 PALLDQ8WX93 1383 aa26.17■■□□□ 1.78
SMIM11A-204ENST00000474455 KCNQ4P56696 695 aa26.17■■□□□ 1.78
SMIM11A-204ENST00000474455 FLIIQ13045 1269 aa26.17■■□□□ 1.78
SMIM11A-204ENST00000474455 DZIP1LQ8IYY4 767 aaKnown RBP26.17■■□□□ 1.78
SMIM11A-204ENST00000474455 DBF4Q9UBU7 674 aaPredicted RBP26.17■■□□□ 1.78
SMIM11A-204ENST00000474455 IPO8O15397 1037 aaKnown RBP26.16■■□□□ 1.78
SMIM11A-204ENST00000474455 PDE3AQ14432 1141 aa26.16■■□□□ 1.78
SMIM11A-204ENST00000474455 C8orf34Q49A92 452 aa26.15■■□□□ 1.78
SMIM11A-204ENST00000474455 FAM196AQ6ZSG2 479 aa26.15■■□□□ 1.78
SMIM11A-204ENST00000474455 F6X3S4 739 aa26.15■■□□□ 1.78
SMIM11A-204ENST00000474455 ARHGAP45Q92619 1136 aa26.15■■□□□ 1.78
SMIM11A-204ENST00000474455 NBPF26B4DH59 902 aa26.14■■□□□ 1.78
SMIM11A-204ENST00000474455 TRIM37O94972 964 aa26.14■■□□□ 1.78
SMIM11A-204ENST00000474455 NBPF14Q5TI25 921 aa26.14■■□□□ 1.78
SMIM11A-204ENST00000474455 NBPF10Q6P3W6 841 aaKnown RBP26.14■■□□□ 1.78
SMIM11A-204ENST00000474455 FTSJ3Q8IY81 847 aaKnown RBP26.14■■□□□ 1.78
SMIM11A-204ENST00000474455 VSIG10Q8N0Z9 540 aa26.14■■□□□ 1.78
SMIM11A-204ENST00000474455 TMEM57Q8N5G2 664 aa26.14■■□□□ 1.78
SMIM11A-204ENST00000474455 NBPF15Q8N660 670 aa26.14■■□□□ 1.78
SMIM11A-204ENST00000474455 DDX21Q9NR30 783 aaKnown RBP eCLIP26.14■■□□□ 1.78
SMIM11A-204ENST00000474455 MYH14Q7Z406 1995 aaKnown RBP26.14■■□□□ 1.77
SMIM11A-204ENST00000474455 LOC102724428A0A0B4J2F2 783 aa26.13■■□□□ 1.77
SMIM11A-204ENST00000474455 SIK1P57059 783 aa26.13■■□□□ 1.77
SMIM11A-204ENST00000474455 ATP6V1AP38606 617 aa26.13■■□□□ 1.77
SMIM11A-204ENST00000474455 LRP10Q7Z4F1 713 aa26.13■■□□□ 1.77
SMIM11A-204ENST00000474455 FKBP5Q13451 457 aaPredicted RBP26.12■■□□□ 1.77
SMIM11A-204ENST00000474455 ITPK1Q13572 414 aa26.12■■□□□ 1.77
SMIM11A-204ENST00000474455 AIMP1Q12904 312 aaKnown RBP26.11■■□□□ 1.77
SMIM11A-204ENST00000474455 BCL11BQ9C0K0 894 aaPredicted RBP26.11■■□□□ 1.77
SMIM11A-204ENST00000474455 PTPRCP08575 1304 aa26.11■■□□□ 1.77
SMIM11A-204ENST00000474455 SKAP1Q86WV1 359 aa26.1■■□□□ 1.77
SMIM11A-204ENST00000474455 SMARCC1Q92922 1105 aaPredicted RBP26.1■■□□□ 1.77
SMIM11A-204ENST00000474455 CYP19A1P11511 503 aaPredicted RBP26.09■■□□□ 1.77
SMIM11A-204ENST00000474455 NFKBIBQ15653 356 aa26.09■■□□□ 1.77
SMIM11A-204ENST00000474455 API5Q9BZZ5 524 aaKnown RBP26.09■■□□□ 1.77
SMIM11A-204ENST00000474455 LY75O60449 1722 aa26.09■■□□□ 1.77
SMIM11A-204ENST00000474455 ABCC4O15439 1325 aa26.09■■□□□ 1.77
SMIM11A-204ENST00000474455 GSE1Q14687 1217 aa26.08■■□□□ 1.77
SMIM11A-204ENST00000474455 CHMP4AQ9BY43 222 aa26.08■■□□□ 1.77
SMIM11A-204ENST00000474455 HYPKQ9NX55 129 aa26.08■■□□□ 1.77
SMIM11A-204ENST00000474455 SLC4A10Q6U841 1118 aa26.07■■□□□ 1.76
SMIM11A-204ENST00000474455 ITPRIPQ8IWB1 547 aa26.07■■□□□ 1.76
SMIM11A-204ENST00000474455 XAGE3Q8WTP9 111 aa26.07■■□□□ 1.76
SMIM11A-204ENST00000474455 TEX13AQ9BXU3 409 aaPredicted RBP26.07■■□□□ 1.76
SMIM11A-204ENST00000474455 COL5A3P25940 1745 aaPredicted RBP26.07■■□□□ 1.76
SMIM11A-204ENST00000474455 MVPQ14764 893 aaKnown RBP26.06■■□□□ 1.76
SMIM11A-204ENST00000474455 COPS6Q7L5N1 327 aa26.06■■□□□ 1.76
SMIM11A-204ENST00000474455 PI4KAP2A4QPH2 592 aa26.06■■□□□ 1.76
SMIM11A-204ENST00000474455 PI4KAP1Q8N8J0 262 aa26.06■■□□□ 1.76
SMIM11A-204ENST00000474455 STARD3NLO95772 234 aa26.05■■□□□ 1.76
SMIM11A-204ENST00000474455 AAMPQ13685 434 aa26.05■■□□□ 1.76
SMIM11A-204ENST00000474455 ZBTB1Q9Y2K1 713 aa26.05■■□□□ 1.76
SMIM11A-204ENST00000474455 TAF1LQ8IZX4 1826 aa26.05■■□□□ 1.76
SMIM11A-204ENST00000474455 ADCY9O60503 1353 aa26.05■■□□□ 1.76
SMIM11A-204ENST00000474455 ZNF330Q9Y3S2 320 aaPredicted RBP26.04■■□□□ 1.76
SMIM11A-204ENST00000474455 CICQ96RK0 1608 aaPredicted RBP26.03■■□□□ 1.76
SMIM11A-204ENST00000474455 TTLL7Q6ZT98 887 aa26.03■■□□□ 1.76
SMIM11A-204ENST00000474455 LINC00116Q8NCU8 138 aa26.03■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms