RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 USPL1Q5W0Q7 1092 aa24.83■■□□□ 1.57
COL7A1-209ENST00000474432 TTC5Q8N0Z6 440 aa24.83■■□□□ 1.57
COL7A1-209ENST00000474432 PARP3Q9Y6F1 533 aa24.83■■□□□ 1.57
COL7A1-209ENST00000474432 COL15A1P39059 1388 aa24.82■■□□□ 1.56
COL7A1-209ENST00000474432 BCL2L12Q9HB09 334 aa24.82■■□□□ 1.56
COL7A1-209ENST00000474432 A0A0G2JLW4 131 aa24.81■■□□□ 1.56
COL7A1-209ENST00000474432 NARFQ9UHQ1 456 aa24.81■■□□□ 1.56
COL7A1-209ENST00000474432 POLRMTO00411 1230 aaKnown RBP24.8■■□□□ 1.56
COL7A1-209ENST00000474432 KCNA3P22001 575 aa24.8■■□□□ 1.56
COL7A1-209ENST00000474432 EIF5P55010 431 aaKnown RBP24.8■■□□□ 1.56
COL7A1-209ENST00000474432 MCM10Q7L590 875 aa24.8■■□□□ 1.56
COL7A1-209ENST00000474432 DLG5Q8TDM6 1919 aa24.79■■□□□ 1.56
COL7A1-209ENST00000474432 DPEP1P16444 411 aa24.79■■□□□ 1.56
COL7A1-209ENST00000474432 CANXP27824 592 aaKnown RBP24.79■■□□□ 1.56
COL7A1-209ENST00000474432 AFDNP55196 1824 aaKnown RBP24.79■■□□□ 1.56
COL7A1-209ENST00000474432 ZPR1O75312 459 aa24.78■■□□□ 1.56
COL7A1-209ENST00000474432 DCTN1Q14203 1278 aa24.78■■□□□ 1.56
COL7A1-209ENST00000474432 NRXN2Q9P2S2 1712 aa24.78■■□□□ 1.56
COL7A1-209ENST00000474432 BTBD11A6QL63 1104 aa24.77■■□□□ 1.56
COL7A1-209ENST00000474432 STARD3NLO95772 234 aa24.77■■□□□ 1.56
COL7A1-209ENST00000474432 FMNL2Q96PY5 1086 aa24.77■■□□□ 1.56
COL7A1-209ENST00000474432 PLEKHF1Q96S99 279 aa24.77■■□□□ 1.56
COL7A1-209ENST00000474432 ADCY9O60503 1353 aa24.77■■□□□ 1.56
COL7A1-209ENST00000474432 NFIXQ14938 502 aa24.76■■□□□ 1.55
COL7A1-209ENST00000474432 HTATSF1O43719 755 aaKnown RBP24.75■■□□□ 1.55
COL7A1-209ENST00000474432 TEX13AQ9BXU3 409 aaPredicted RBP24.75■■□□□ 1.55
COL7A1-209ENST00000474432 A1BGP04217 495 aa24.74■■□□□ 1.55
COL7A1-209ENST00000474432 ATP10DQ9P241 1426 aa24.73■■□□□ 1.55
COL7A1-209ENST00000474432 PRAMEF22A3QJZ6 481 aa24.73■■□□□ 1.55
COL7A1-209ENST00000474432 RTF1Q92541 710 aaKnown RBP24.73■■□□□ 1.55
COL7A1-209ENST00000474432 ARFGEF1Q9Y6D6 1849 aa24.72■■□□□ 1.55
COL7A1-209ENST00000474432 SCN7AQ01118 1682 aa24.72■■□□□ 1.55
COL7A1-209ENST00000474432 DDX10Q13206 875 aaKnown RBP24.72■■□□□ 1.55
COL7A1-209ENST00000474432 BCS1LQ9Y276 419 aa24.72■■□□□ 1.55
COL7A1-209ENST00000474432 USP16Q9Y5T5 823 aa24.72■■□□□ 1.55
COL7A1-209ENST00000474432 IL6STP40189 918 aaPredicted RBP24.7■■□□□ 1.54
COL7A1-209ENST00000474432 CHRNA5P30532 468 aa24.69■■□□□ 1.54
COL7A1-209ENST00000474432 RALBP1Q15311 655 aa24.69■■□□□ 1.54
COL7A1-209ENST00000474432 KDM3BQ7LBC6 1761 aa24.68■■□□□ 1.54
COL7A1-209ENST00000474432 A0A087WZG4 1122 aa24.68■■□□□ 1.54
COL7A1-209ENST00000474432 SERPINB2P05120 415 aa24.68■■□□□ 1.54
COL7A1-209ENST00000474432 TBC1D2BQ9UPU7 963 aa24.68■■□□□ 1.54
COL7A1-209ENST00000474432 TAF7Q15545 349 aaPredicted RBP24.67■■□□□ 1.54
COL7A1-209ENST00000474432 PIM2Q9P1W9 311 aa24.67■■□□□ 1.54
COL7A1-209ENST00000474432 PIP4K2AP48426 406 aaPredicted RBP24.66■■□□□ 1.54
COL7A1-209ENST00000474432 C1QTNF8P60827 252 aa24.66■■□□□ 1.54
COL7A1-209ENST00000474432 NFE2L2Q16236 605 aa24.66■■□□□ 1.54
COL7A1-209ENST00000474432 TBC1D9BQ66K14 1250 aa24.66■■□□□ 1.54
COL7A1-209ENST00000474432 MIS18AQ9NYP9 233 aa24.66■■□□□ 1.54
COL7A1-209ENST00000474432 BCORQ6W2J9 1755 aa24.66■■□□□ 1.54
COL7A1-209ENST00000474432 DLEC1Q9Y238 1755 aa24.66■■□□□ 1.54
COL7A1-209ENST00000474432 CARMIL3Q8ND23 1372 aa24.66■■□□□ 1.54
COL7A1-209ENST00000474432 CAMTA2O94983 1202 aa24.65■■□□□ 1.54
COL7A1-209ENST00000474432 SNRPA1P09661 255 aaKnown RBP24.65■■□□□ 1.54
COL7A1-209ENST00000474432 ANKRD31Q8N7Z5 1873 aa24.65■■□□□ 1.54
COL7A1-209ENST00000474432 THUMPD2Q9BTF0 503 aaKnown RBP24.64■■□□□ 1.54
COL7A1-209ENST00000474432 NBPF26B4DH59 902 aa24.63■■□□□ 1.53
COL7A1-209ENST00000474432 NBPF10Q6P3W6 841 aaKnown RBP24.63■■□□□ 1.53
COL7A1-209ENST00000474432 BICDL1Q6ZP65 573 aa24.63■■□□□ 1.53
COL7A1-209ENST00000474432 NBPF15Q8N660 670 aa24.63■■□□□ 1.53
COL7A1-209ENST00000474432 ZNF330Q9Y3S2 320 aaPredicted RBP24.63■■□□□ 1.53
COL7A1-209ENST00000474432 GIGYF1O75420 1035 aaPredicted RBP24.62■■□□□ 1.53
COL7A1-209ENST00000474432 DALRD3Q5D0E6 543 aaKnown RBP24.62■■□□□ 1.53
COL7A1-209ENST00000474432 ARHGAP27Q6ZUM4 889 aa24.62■■□□□ 1.53
COL7A1-209ENST00000474432 LAMB4A4D0S4 1761 aa24.61■■□□□ 1.53
COL7A1-209ENST00000474432 MYBBP1AQ9BQG0 1328 aaKnown RBP24.6■■□□□ 1.53
COL7A1-209ENST00000474432 NEFMP07197 916 aa24.59■■□□□ 1.53
COL7A1-209ENST00000474432 DZIP3Q86Y13 1208 aaKnown RBP24.59■■□□□ 1.53
COL7A1-209ENST00000474432 ZNF526Q8TF50 670 aaPredicted RBP24.58■■□□□ 1.53
COL7A1-209ENST00000474432 PNNQ9H307 717 aaKnown RBP24.58■■□□□ 1.53
COL7A1-209ENST00000474432 SBF1O95248 1867 aa24.58■■□□□ 1.52
COL7A1-209ENST00000474432 EIF4A1P60842 406 aaKnown RBP24.57■■□□□ 1.52
COL7A1-209ENST00000474432 PRR5LQ6MZQ0 368 aa24.57■■□□□ 1.52
COL7A1-209ENST00000474432 GPBP1L1Q9HC44 474 aaPredicted RBP24.57■■□□□ 1.52
COL7A1-209ENST00000474432 COL11A2P13942 1736 aaPredicted RBP24.57■■□□□ 1.52
COL7A1-209ENST00000474432 MAPK8IP3Q9UPT6 1336 aa24.57■■□□□ 1.52
COL7A1-209ENST00000474432 CCDC24Q8N4L8 307 aa24.56■■□□□ 1.52
COL7A1-209ENST00000474432 PNISRQ8TF01 805 aaKnown RBP24.56■■□□□ 1.52
COL7A1-209ENST00000474432 C2CD5Q86YS7 1000 aa24.55■■□□□ 1.52
COL7A1-209ENST00000474432 TMPOP42166 694 aaKnown RBP24.53■■□□□ 1.52
COL7A1-209ENST00000474432 CLEC4GQ6UXB4 293 aa24.53■■□□□ 1.52
COL7A1-209ENST00000474432 SETDB2Q96T68 719 aa24.53■■□□□ 1.52
COL7A1-209ENST00000474432 BRIP1Q9BX63 1249 aa24.53■■□□□ 1.52
COL7A1-209ENST00000474432 RIPK4P57078 832 aa24.52■■□□□ 1.52
COL7A1-209ENST00000474432 C9orf131Q5VYM1 1079 aa24.52■■□□□ 1.52
COL7A1-209ENST00000474432 H0YIN7 160 aa24.51■■□□□ 1.51
COL7A1-209ENST00000474432 KIF3CO14782 793 aa24.51■■□□□ 1.51
COL7A1-209ENST00000474432 NPM2Q86SE8 214 aaKnown RBP24.51■■□□□ 1.51
COL7A1-209ENST00000474432 PRKRIP1Q9H875 184 aaPredicted RBP24.51■■□□□ 1.51
COL7A1-209ENST00000474432 RGL2O15211 777 aa24.5■■□□□ 1.51
COL7A1-209ENST00000474432 PRELPP51888 382 aa24.5■■□□□ 1.51
COL7A1-209ENST00000474432 TTLL6Q8N841 843 aa24.5■■□□□ 1.51
COL7A1-209ENST00000474432 HLFQ16534 295 aa24.49■■□□□ 1.51
COL7A1-209ENST00000474432 CCDC146Q8IYE0 955 aa24.49■■□□□ 1.51
COL7A1-209ENST00000474432 CNBD1Q8NA66 436 aa24.48■■□□□ 1.51
COL7A1-209ENST00000474432 RRP7AQ9Y3A4 280 aaKnown RBP24.48■■□□□ 1.51
COL7A1-209ENST00000474432 SENP3-EIF4A1A0A087X0R7 540 aa24.47■■□□□ 1.51
COL7A1-209ENST00000474432 PDE6BP35913 854 aa24.47■■□□□ 1.51
COL7A1-209ENST00000474432 RASSF7Q02833 373 aa24.47■■□□□ 1.51
COL7A1-209ENST00000474432 ADAMTS8Q9UP79 889 aa24.47■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms