RNA–Protein interactions for RNA: ENST00000474421.1

PDLIM4-206, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 1,084 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-206ENST00000474421 A0A0G2JLW4 131 aa27.18■■□□□ 1.94
PDLIM4-206ENST00000474421 GIGYF1O75420 1035 aaPredicted RBP27.18■■□□□ 1.94
PDLIM4-206ENST00000474421 USPL1Q5W0Q7 1092 aa27.18■■□□□ 1.94
PDLIM4-206ENST00000474421 NARFQ9UHQ1 456 aa27.18■■□□□ 1.94
PDLIM4-206ENST00000474421 ZNF496Q96IT1 587 aaPredicted RBP27.17■■□□□ 1.94
PDLIM4-206ENST00000474421 DPEP1P16444 411 aa27.16■■□□□ 1.94
PDLIM4-206ENST00000474421 TM4SF1P30408 202 aa27.16■■□□□ 1.94
PDLIM4-206ENST00000474421 C1QTNF8P60827 252 aa27.16■■□□□ 1.94
PDLIM4-206ENST00000474421 DDR1Q08345 913 aa27.16■■□□□ 1.94
PDLIM4-206ENST00000474421 RTF1Q92541 710 aaKnown RBP27.16■■□□□ 1.94
PDLIM4-206ENST00000474421 HEG1Q9ULI3 1381 aa27.16■■□□□ 1.94
PDLIM4-206ENST00000474421 ATP10DQ9P241 1426 aa27.16■■□□□ 1.94
PDLIM4-206ENST00000474421 FMNL2Q96PY5 1086 aa27.15■■□□□ 1.94
PDLIM4-206ENST00000474421 BCS1LQ9Y276 419 aa27.15■■□□□ 1.94
PDLIM4-206ENST00000474421 A0A087WZG4 1122 aa27.14■■□□□ 1.94
PDLIM4-206ENST00000474421 POLRMTO00411 1230 aaKnown RBP27.14■■□□□ 1.94
PDLIM4-206ENST00000474421 CANXP27824 592 aaKnown RBP27.14■■□□□ 1.94
PDLIM4-206ENST00000474421 BRCA1P38398 1863 aaKnown RBP27.14■■□□□ 1.94
PDLIM4-206ENST00000474421 ADCY9O60503 1353 aa27.13■■□□□ 1.93
PDLIM4-206ENST00000474421 BTBD11A6QL63 1104 aa27.13■■□□□ 1.93
PDLIM4-206ENST00000474421 HTATSF1O43719 755 aaKnown RBP27.11■■□□□ 1.93
PDLIM4-206ENST00000474421 EIF5P55010 431 aaKnown RBP27.11■■□□□ 1.93
PDLIM4-206ENST00000474421 PIM2Q9P1W9 311 aa27.11■■□□□ 1.93
PDLIM4-206ENST00000474421 NEFMP07197 916 aa27.1■■□□□ 1.93
PDLIM4-206ENST00000474421 GPBP1L1Q9HC44 474 aaPredicted RBP27.1■■□□□ 1.93
PDLIM4-206ENST00000474421 NFIXQ14938 502 aa27.09■■□□□ 1.93
PDLIM4-206ENST00000474421 ARFGEF1Q9Y6D6 1849 aa27.09■■□□□ 1.93
PDLIM4-206ENST00000474421 KCNA3P22001 575 aa27.08■■□□□ 1.93
PDLIM4-206ENST00000474421 NPM2Q86SE8 214 aaKnown RBP27.08■■□□□ 1.93
PDLIM4-206ENST00000474421 IL6STP40189 918 aaPredicted RBP27.07■■□□□ 1.92
PDLIM4-206ENST00000474421 BCL2L12Q9HB09 334 aa27.07■■□□□ 1.92
PDLIM4-206ENST00000474421 AFDNP55196 1824 aaKnown RBP27.06■■□□□ 1.92
PDLIM4-206ENST00000474421 DALRD3Q5D0E6 543 aaKnown RBP27.06■■□□□ 1.92
PDLIM4-206ENST00000474421 ARHGAP27Q6ZUM4 889 aa27.06■■□□□ 1.92
PDLIM4-206ENST00000474421 MCM10Q7L590 875 aa27.06■■□□□ 1.92
PDLIM4-206ENST00000474421 NRXN2Q9P2S2 1712 aa27.05■■□□□ 1.92
PDLIM4-206ENST00000474421 KCNQ3O43525 872 aa27.03■■□□□ 1.92
PDLIM4-206ENST00000474421 SERPINB2P05120 415 aa27.03■■□□□ 1.92
PDLIM4-206ENST00000474421 PNNQ9H307 717 aaKnown RBP27.03■■□□□ 1.92
PDLIM4-206ENST00000474421 ZNF330Q9Y3S2 320 aaPredicted RBP27.03■■□□□ 1.92
PDLIM4-206ENST00000474421 SENP3-EIF4A1A0A087X0R7 540 aa27.02■■□□□ 1.92
PDLIM4-206ENST00000474421 A1BGP04217 495 aa27.01■■□□□ 1.91
PDLIM4-206ENST00000474421 SNRPA1P09661 255 aaKnown RBP27.01■■□□□ 1.91
PDLIM4-206ENST00000474421 CHRNA5P30532 468 aa27.01■■□□□ 1.91
PDLIM4-206ENST00000474421 ZNF526Q8TF50 670 aaPredicted RBP27.01■■□□□ 1.91
PDLIM4-206ENST00000474421 SCN7AQ01118 1682 aa27.01■■□□□ 1.91
PDLIM4-206ENST00000474421 TAF7Q15545 349 aaPredicted RBP27■■□□□ 1.91
PDLIM4-206ENST00000474421 DCTN1Q14203 1278 aa26.99■■□□□ 1.91
PDLIM4-206ENST00000474421 RALBP1Q15311 655 aa26.99■■□□□ 1.91
PDLIM4-206ENST00000474421 TBC1D2BQ9UPU7 963 aa26.99■■□□□ 1.91
PDLIM4-206ENST00000474421 BICDL1Q6ZP65 573 aa26.98■■□□□ 1.91
PDLIM4-206ENST00000474421 USP16Q9Y5T5 823 aa26.98■■□□□ 1.91
PDLIM4-206ENST00000474421 DLG5Q8TDM6 1919 aa26.98■■□□□ 1.91
PDLIM4-206ENST00000474421 TBC1D9BQ66K14 1250 aa26.96■■□□□ 1.91
PDLIM4-206ENST00000474421 PNISRQ8TF01 805 aaKnown RBP26.96■■□□□ 1.91
PDLIM4-206ENST00000474421 PLEKHF1Q96S99 279 aa26.96■■□□□ 1.91
PDLIM4-206ENST00000474421 PDZRN3Q9UPQ7 1066 aa26.96■■□□□ 1.91
PDLIM4-206ENST00000474421 CARMIL3Q8ND23 1372 aa26.96■■□□□ 1.91
PDLIM4-206ENST00000474421 MAPK8IP3Q9UPT6 1336 aa26.95■■□□□ 1.91
PDLIM4-206ENST00000474421 DLEC1Q9Y238 1755 aa26.95■■□□□ 1.9
PDLIM4-206ENST00000474421 H0YIN7 160 aa26.94■■□□□ 1.9
PDLIM4-206ENST00000474421 CAMTA2O94983 1202 aa26.94■■□□□ 1.9
PDLIM4-206ENST00000474421 NFE2L2Q16236 605 aa26.94■■□□□ 1.9
PDLIM4-206ENST00000474421 DZIP3Q86Y13 1208 aaKnown RBP26.94■■□□□ 1.9
PDLIM4-206ENST00000474421 SETDB2Q96T68 719 aa26.94■■□□□ 1.9
PDLIM4-206ENST00000474421 C2CD5Q86YS7 1000 aa26.93■■□□□ 1.9
PDLIM4-206ENST00000474421 BCORQ6W2J9 1755 aa26.92■■□□□ 1.9
PDLIM4-206ENST00000474421 C9orf131Q5VYM1 1079 aa26.92■■□□□ 1.9
PDLIM4-206ENST00000474421 TTLL6Q8N841 843 aa26.92■■□□□ 1.9
PDLIM4-206ENST00000474421 PRAMEF22A3QJZ6 481 aa26.91■■□□□ 1.9
PDLIM4-206ENST00000474421 PDE6BP35913 854 aa26.91■■□□□ 1.9
PDLIM4-206ENST00000474421 CLEC4GQ6UXB4 293 aa26.91■■□□□ 1.9
PDLIM4-206ENST00000474421 BRIP1Q9BX63 1249 aa26.91■■□□□ 1.9
PDLIM4-206ENST00000474421 ZNF652Q9Y2D9 606 aa26.91■■□□□ 1.9
PDLIM4-206ENST00000474421 RGL2O15211 777 aa26.89■■□□□ 1.9
PDLIM4-206ENST00000474421 NPHP1O15259 732 aa26.89■■□□□ 1.9
PDLIM4-206ENST00000474421 DDX10Q13206 875 aaKnown RBP26.89■■□□□ 1.9
PDLIM4-206ENST00000474421 SBF1O95248 1867 aa26.88■■□□□ 1.89
PDLIM4-206ENST00000474421 PRR5LQ6MZQ0 368 aa26.88■■□□□ 1.89
PDLIM4-206ENST00000474421 CNBD1Q8NA66 436 aa26.88■■□□□ 1.89
PDLIM4-206ENST00000474421 MIS18AQ9NYP9 233 aa26.88■■□□□ 1.89
PDLIM4-206ENST00000474421 LAMB4A4D0S4 1761 aa26.88■■□□□ 1.89
PDLIM4-206ENST00000474421 KDM3BQ7LBC6 1761 aa26.88■■□□□ 1.89
PDLIM4-206ENST00000474421 ANKRD31Q8N7Z5 1873 aa26.87■■□□□ 1.89
PDLIM4-206ENST00000474421 KIF3CO14782 793 aa26.87■■□□□ 1.89
PDLIM4-206ENST00000474421 PIP4K2AP48426 406 aaPredicted RBP26.87■■□□□ 1.89
PDLIM4-206ENST00000474421 RNF181Q9P0P0 153 aa26.87■■□□□ 1.89
PDLIM4-206ENST00000474421 ST5P78524 1137 aa26.86■■□□□ 1.89
PDLIM4-206ENST00000474421 NBPF26B4DH59 902 aa26.85■■□□□ 1.89
PDLIM4-206ENST00000474421 NBPF10Q6P3W6 841 aaKnown RBP26.85■■□□□ 1.89
PDLIM4-206ENST00000474421 NBPF15Q8N660 670 aa26.85■■□□□ 1.89
PDLIM4-206ENST00000474421 MYBBP1AQ9BQG0 1328 aaKnown RBP26.85■■□□□ 1.89
PDLIM4-206ENST00000474421 ZNF622Q969S3 477 aaKnown RBP eCLIP26.84■■□□□ 1.89
PDLIM4-206ENST00000474421 KDM2BQ8NHM5 1336 aa26.83■■□□□ 1.89
PDLIM4-206ENST00000474421 ZC3H4Q9UPT8 1303 aaKnown RBP26.83■■□□□ 1.89
PDLIM4-206ENST00000474421 EIF4A1P60842 406 aaKnown RBP26.82■■□□□ 1.88
PDLIM4-206ENST00000474421 NBPF5PQ86XG9 351 aaPredicted RBP26.82■■□□□ 1.88
PDLIM4-206ENST00000474421 THUMPD2Q9BTF0 503 aaKnown RBP26.82■■□□□ 1.88
PDLIM4-206ENST00000474421 LMNB1P20700 586 aa26.81■■□□□ 1.88
PDLIM4-206ENST00000474421 LMOD3Q0VAK6 560 aa26.81■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms